mRNA_H-paniculata_contig8659.16608.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8659.16608.1
Unique NamemRNA_H-paniculata_contig8659.16608.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8659.16608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8659contigH-paniculata_contig8659:821..1466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size646
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8659.16608.1prot_H-paniculata_contig8659.16608.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8659 977..1339 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931088.383063-UTR-H-paniculata_contig8659:820..9761622931088.383063-UTR-H-paniculata_contig8659:820..976Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8659 821..976 +
1691481584.5320852-UTR-H-paniculata_contig8659:820..9761691481584.5320852-UTR-H-paniculata_contig8659:820..976Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8659 821..976 +
1622931088.4220514-UTR-H-paniculata_contig8659:1339..14661622931088.4220514-UTR-H-paniculata_contig8659:1339..1466Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8659 1340..1466 +
1691481584.5536675-UTR-H-paniculata_contig8659:1339..14661691481584.5536675-UTR-H-paniculata_contig8659:1339..1466Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8659 1340..1466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931088.4013686-CDS-H-paniculata_contig8659:976..13391622931088.4013686-CDS-H-paniculata_contig8659:976..1339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8659 977..1339 +
1691481584.5429418-CDS-H-paniculata_contig8659:976..13391691481584.5429418-CDS-H-paniculata_contig8659:976..1339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8659 977..1339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8659.16608.1

>prot_H-paniculata_contig8659.16608.1 ID=prot_H-paniculata_contig8659.16608.1|Name=mRNA_H-paniculata_contig8659.16608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MNSFSLTIADCFVPLTQYMDSERNSFRNETLAWMSRASATISSLLAIYHR
TECYGKVIRFAHTIVLRYSLKTWVLLSTPTRITFKLRLDNSQTVEQVHTG
ARVQMMLRRMSRRDCASHEE*
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mRNA from alignment at H-paniculata_contig8659:821..1466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8659.16608.1 ID=mRNA_H-paniculata_contig8659.16608.1|Name=mRNA_H-paniculata_contig8659.16608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=646bp|location=Sequence derived from alignment at H-paniculata_contig8659:821..1466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTCTTTCGCCATTTCTTACTCAAGCAGCGCGTTGAACCTTCAGGGTGT
ATGCGAAAAGTGAATCCCTTCAGCAAATTCAGAAATTATAGTATGTAGCC
AACAGTGAGCTCCGCGACCCGGACCCAGTCCACCTACACCAACGTCTCGT
TACAAGATGAACTCTTTTTCACTCACAATCGCTGACTGCTTTGTACCTCT
CACGCAATATATGGACTCTGAAAGGAATTCCTTTCGTAACGAGACGCTGG
CATGGATGAGCCGGGCGTCTGCGACGATCAGCTCACTGTTAGCTATATAC
CACCGAACCGAGTGTTATGGAAAGGTAATTCGTTTTGCTCATACAATTGT
TCTACGGTATTCCCTAAAAACTTGGGTTCTTCTTTCAACACCCACCCGTA
TAACCTTCAAATTGAGACTAGACAATAGCCAAACAGTAGAGCAGGTACAC
ACTGGTGCAAGAGTACAGATGATGCTACGTCGAATGAGTAGACGAGACTG
TGCCTCACACGAAGAATAATGGAGTTATCAAGTTTACATTAGAATGACCG
ACATCGACGAAGAACCTTTCTTCCGTTCTCTACACACTAATCATTCCCGC
ATTCCCGCCCATGCAACATCTTCGGAAGAGGTTCACCCCTTTCCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig8659:821..1466+

>mRNA_H-paniculata_contig8659.16608.1 ID=mRNA_H-paniculata_contig8659.16608.1|Name=mRNA_H-paniculata_contig8659.16608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig8659:821..1466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACTCTTTTTCACTCACAATCGCTGACTGCTTTGTACCTCTCACGCA
ATATATGGACTCTGAAAGGAATTCCTTTCGTAACGAGACGCTGGCATGGA
TGAGCCGGGCGTCTGCGACGATCAGCTCACTGTTAGCTATATACCACCGA
ACCGAGTGTTATGGAAAGGTAATTCGTTTTGCTCATACAATTGTTCTACG
GTATTCCCTAAAAACTTGGGTTCTTCTTTCAACACCCACCCGTATAACCT
TCAAATTGAGACTAGACAATAGCCAAACAGTAGAGCAGGTACACACTGGT
GCAAGAGTACAGATGATGCTACGTCGAATGAGTAGACGAGACTGTGCCTC
ACACGAAGAATAAATGAACTCTTTTTCACTCACAATCGCTGACTGCTTTG
TACCTCTCACGCAATATATGGACTCTGAAAGGAATTCCTTTCGTAACGAG
ACGCTGGCATGGATGAGCCGGGCGTCTGCGACGATCAGCTCACTGTTAGC
TATATACCACCGAACCGAGTGTTATGGAAAGGTAATTCGTTTTGCTCATA
CAATTGTTCTACGGTATTCCCTAAAAACTTGGGTTCTTCTTTCAACACCC
ACCCGTATAACCTTCAAATTGAGACTAGACAATAGCCAAACAGTAGAGCA
GGTACACACTGGTGCAAGAGTACAGATGATGCTACGTCGAATGAGTAGAC
GAGACTGTGCCTCACACGAAGAATAA
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