mRNA_H-paniculata_contig8646.16605.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8646.16605.1
Unique NamemRNA_H-paniculata_contig8646.16605.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8646.16605.1 vs. uniprot
Match: D7FKI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI0_ECTSI)

HSP 1 Score: 551 bits (1421), Expect = 7.690e-191
Identity = 292/441 (66.21%), Postives = 335/441 (75.96%), Query Frame = 1
Query:    1 TTEDPRRSLAVTTPTESPSLYPAGGTYYHPVAVSLVSNSGALIFYTTDGTEPSESSDVVSSGELIVIEESGTLRATAAPTRSTFSAFSSEEVQATFVVYSEGKCGYAYFVPDFTRTGYSGKVVEVDLQTAELGKVRLHSVVTDFADFYSDLGVGPYDDQVAVQDLAADGDSSLVGYWGGFSGEVDGSALGFLSPLFNGEDFHGNALQ--LGNFGNDNVTRFC-ELDSTLESTSTCLFTVLNLAEVDDDLRGFSGGFLDSGKAYFVPSRNGRGRYAKLVRVDAGTFSADSVEVLDLLKVDSEVGGFFGGFASDGYGYLVPSRSFKGLVGGINTNLSADGIAGSHLL-------ENEVRVAGHLESSYSGKLVRVNLTDFSVTGVEVLDLTKVDPDLRGFTGGFAAGHWGFLVPFKNKEVDDEYSGKMVRFDRRTFDLASVTV 1293
            TT   RR+LA T   E P+ +P GGTY+ P+AVSLVS+  A+++YTTDGT P  +S  V+S ELIV+EES T+RA AA     F A SS EV+A+FVVY  GKCG+AYFVP FT +GYSG VVEV+LQT  LG VRLH VVTDFADFYSD GVGPY  QV   DL A+GDS L GYWGGFSG+VDG   GFLSPLF+GEDFHG A+Q  L  FG  N TRFC   +  LES +TC + V++L +VD DLRGFSGGFL + KAYFVPS NGRG  AK VRVDA  FS++SVEVLDL  VD EVGGFFGGFA +GYGYLVP RSF+G VGG+NTNLSADG A S              + AG L+ +YSGKLVRV+L+DFS +GV+VLDLT+VDPDLRGFTGGFAAGHWGFLVPFKNKE D E+SGKMVRFD RTFD ASVTV
Sbjct:  138 TTVISRRALAGTEQAEDPTFFPDGGTYHEPIAVSLVSDDSAVVYYTTDGTVPDGTSTFVTSSELIVLEESVTIRAIAAFQGEDFDARSSAEVEASFVVYVAGKCGHAYFVPHFTSSGYSGNVVEVELQTDRLGSVRLHGVVTDFADFYSDGGVGPYTGQVISSDLTAEGDSGLAGYWGGFSGDVDGEMFGFLSPLFDGEDFHGKAVQIRLDGFGGTNTTRFCGSSEGVLESNATCTYNVVDLEDVDPDLRGFSGGFLHASKAYFVPSYNGRGAGAKFVRVDASNFSSNSVEVLDLHTVDPEVGGFFGGFAWEGYGYLVPCRSFQGPVGGVNTNLSADGFAWSSSFLGSDSTGRGSGQKAGRLQPAYSGKLVRVDLSDFSSSGVQVLDLTEVDPDLRGFTGGFAAGHWGFLVPFKNKEADGEFSGKMVRFDLRTFDHASVTV 578          
BLAST of mRNA_H-paniculata_contig8646.16605.1 vs. uniprot
Match: A0A6V1PSV2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PSV2_HETAK)

HSP 1 Score: 170 bits (430), Expect = 5.220e-45
Identity = 96/201 (47.76%), Postives = 127/201 (63.18%), Query Frame = 1
Query:  694 CLFTVLNLAEVDDDLRGFSGGFLDSGKAYFVPSRNGRGR---YAKLVRVDAGTFSADSVEVLDLLKVDSEVGGFFGGFASDGYGYLVPSRSFKGLVGGINTNLSADGI--AGSHLLENEVRVAGHLESSYSGKLVRVNLTDFSVTGVEVLDLTKVDPDLRGFTGGFAAGHWGFLVPFKNKE-VDDEYSGKMVRFDRRTFDL 1278
            C   VL+L EV   LRGF+GGF   G  Y VP+ +GR      A L RV AG F+A  VE L+L + D+ VGG++GG      GYLVP R+  G +GGI++  +ADG   A +HL   E    GHLE+ YSG ++R+NLT FSV  VE LDL  + PDLRGF GGF  G +G+LVP+KN+E ++  + G +V+ D  TF+L
Sbjct:    9 CTIAVLDLTEVHAYLRGFAGGFAHGGFVYLVPAADGRESSTPVAHLARVRAGQFNASGVEWLELSEYDTHVGGYYGGLVYGDSGYLVPHRTNIGPIGGIHSRYTADGYKPAPAHLPRLEAG-GGHLEAEYSGAVLRLNLTAFSVDAVEHLDLADLHPDLRGFAGGFVVGKYGYLVPYKNQERLEGGHHGNLVKLDLETFEL 208          
BLAST of mRNA_H-paniculata_contig8646.16605.1 vs. uniprot
Match: A0A7S4E8S4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8S4_9STRA)

HSP 1 Score: 133 bits (334), Expect = 8.970e-30
Identity = 92/264 (34.85%), Postives = 128/264 (48.48%), Query Frame = 1
Query:  637 NDNVTRFCELDSTLESTSTCLFT-VLNLAEVDDDLRGFSGGFLDSGKAYFVPSRNGRGRYAKLVRVDAGTFSADSVEVLDLLKVDSEVGGFFGGF------ASDGYGYLVPSRSFKGLVGGINTNLSAD----GIAGSHLLE------------------------NEVRVAG---------HLESSYSGKLVRVNLTDFSVTG---VEVLDLTKVDPDLRGFTGGFAAGHWGFLVPFKNKEVDDEYSGKMVRFDRRTFDLASV 1287
            N+  T   E+  T+   +    T  L+L    D LRGF GGF      YFVP  +GR     + R++A  FS  +V+ LDL + D+ + G+FGGF      A   YG+LVP  +  G VG +N+   AD    G+     L+                        +E R  G         H    + GKLVR++L DF  TG    +VLDLT++DPDLRGF GG   G +G LVP+KN+  DD + GK+V+ D   F + +V
Sbjct:  606 NNTATTATEVPKTISIPAAPSRTEALDLTATHDRLRGFVGGFAMRDHVYFVPHFDGRNPGHVIARLEAEDFSQATVKALDLWRWDTSLAGYFGGFGYTTHGAGIEYGFLVPHAALTGPVGKVNSQHPADTWAPGVGQDWNLDYSDGRDTSTRLGERHWYEEGGSFHSEYRTEGSQRTAVGGDHTTEYFHGKLVRLHLADFESTGDAPFDVLDLTEIDPDLRGFAGGSVVGRYGLLVPYKNRVGDDGFFGKLVKVDLEAFTVEAV 869          
BLAST of mRNA_H-paniculata_contig8646.16605.1 vs. uniprot
Match: A0A7S2RTQ0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RTQ0_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.590e-28
Identity = 75/178 (42.13%), Postives = 102/178 (57.30%), Query Frame = 1
Query:  781 FVPSRNGRGRYAKLVRVDAGTFSADSVEVLDLLKVDSEVGGFFGGFASDG-----YGYLVPSRSFKGLVGGINTNLSADGIAGSHLLENEVRVAGHLESSYSGKLVRVNLTDFSVTGVEVLDLTKVDPDLRGFTGGFAAGHWGFLVPFKNKEVDDEYS-------------GKMVRFD 1260
            FVP  +G     +++RV    F+  +VEVLDL   DS +GGF GG +        +G+LVP R   G +GG N+  SADG   ++      R +GHL+S YS +LVR NLTDFS   V+V DL KVDPDLRGF+ GF  G   +LVP++N +V ++ +             GK+VR D
Sbjct:    1 FVPLFDGERAGGRVLRVPVDDFTETAVEVLDLSLADSSLGGFQGGASYTSTQGGHFGFLVPLRGSVGPLGGENSRNSADGFQRTN------RGSGHLQSHYSSRLVRFNLTDFSPASVKVYDLAKVDPDLRGFSDGFVVGSHLYLVPYRNCDVGEDMASFGQDVAPCTGAFGKLVRID 172          
BLAST of mRNA_H-paniculata_contig8646.16605.1 vs. uniprot
Match: A0A7S2DPP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPP0_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.380e-27
Identity = 65/148 (43.92%), Postives = 87/148 (58.78%), Query Frame = 1
Query:  751 GGFLDSGKAYFVPSRNGRGRYAKLVRVDAGTFSADSVEVLDLLKVDSEVGGFFGGFA---------SDGYGYLVPSRSFKGLVGGINTNLSADGIAGSHLLENEVRVAG-HLESSYSGKLVRVNLTDFSVTGVEVLDLTKVDPDLRGF 1164
            GGF+     Y VP  +G     K+ RV    F AD V VLDL +V +++ GFFGGFA         S  YGYLVP RS +G + G+NT+ + DG    ++      + G HL + Y G+LVR++L DF+ +GV VLDL+  DPDLRGF
Sbjct:    1 GGFVYGDYLYLVPFFDGHQYGHKVARVHMEHFDADHVHVLDLWEVSTDLAGFFGGFAYTTQSAGGDSKPYGYLVPHRSMEGPIDGVNTDFTVDGFTSEYVNRRRSSMGGDHLTAHYHGRLVRIDLDDFTASGVSVLDLSVYDPDLRGF 148          
BLAST of mRNA_H-paniculata_contig8646.16605.1 vs. uniprot
Match: A0A6H5KG48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG48_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.150e-25
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1
Query: 1102 FSVTGVEVLDLTKVDPDLRGFTGGFAAGHWGFLVPFKNKEVDDEYSGKMVRFDRRTFDLASVTV 1293
            + V  V+VLDLT+VDPDLRGFTGGFAAGHWGFLVPFKNKE D E+SGKMVRFD RTFD A VTV
Sbjct:    6 YFVHAVKVLDLTEVDPDLRGFTGGFAAGHWGFLVPFKNKEADGEFSGKMVRFDLRTFDHAGVTV 69          
BLAST of mRNA_H-paniculata_contig8646.16605.1 vs. uniprot
Match: D0N386_PHYIT (Apple domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N386_PHYIT)

HSP 1 Score: 117 bits (293), Expect = 1.200e-24
Identity = 139/490 (28.37%), Postives = 207/490 (42.24%), Query Frame = 1
Query:   46 ESPSLYPAGGTYYHPVAVSLVSNS-GALIFY-----TTDGTEPSESSDVVSSGELIVIEESGTLRATAAPTRSTFSAFSSEEVQATFVVYSEG----KCGYAYFVPDFTRTGYSGKVVEVDLQTAELGKVRLHSV-VTDFADFYSDLGVGPYDDQVAVQDLAADGDSSLVGYWGGFSGEVDGSALG--FLSPLFNGEDFHGNALQ-------------LG-------------------NFGNDNVTRFCELDSTLESTSTCLFTVLNLAEVDDDLRGFSGGFLDSGKAYFVPSRNGRGRYAKLVRVDAGTFSADSVEVLDLLKVDSEVGGFFGGFASDGYGYLVPSRSF----KGLVGGINTNL-----SAD---------GIAGSHLLENEVRVAGHLE---------SSYSGKLVRVNLTDFSVTGVEVLDLTKVDPDLRGFTGGFAAGHWGFLVPFKNKEVDDE---YSGKMVRFDRRTFDLASVT 1290
            ++P + P GG +   V V L++   GA I Y     T   T    ++ +  SG+   I  SG +      +   F+    E +  + VV S         Y Y VP F  + + G+V  ++L     GK R       +F+D+ +  G+GPY++QVAV DLA   D S  G+ GGF+   + S +   FL P  +  ++   A +             LG                   N G    ++   + +   S+   +  +L+L+ VD  L+GF   F      Y VP +N  G + KL R     F+  SVEVLDL  V+S   GF G    D     +  R F     GLV  +N N      S D         G +G+  + +      ++          + YSG + RV+L DF  T V+ LDLT VD  LRGF  GFA   + FLVP + K  D +    SGK+ R D   F  + ++
Sbjct:  106 DTPEIEPNGGQFNTQVVVRLLTAKLGAAIHYRIVPSTQLATTNLTAAGLFGSGKNFSIAASGDVITLPTYSCKIFAVAVKEGMNDSVVVISNEFKIFPSKYVYLVPYFN-SNFHGRVTRIELGLK--GKKRPRPARFLEFSDYETPNGIGPYNNQVAVIDLATL-DPSFKGFCGGFTAFSNVSFVNETFLVPAADDPNYKTTAWKVILKAQYTASPTHLGFGKPAEMEQAVEYLYLIPYNNGTAYASKVLRIMALTFSSKAPIVEILDLSAVDKSLKGFGSAFTYGSYGYLVPRKNENGLFGKLARFRTDIFTPSSVEVLDLAAVNSHYVGFSGAITWDER--TMNLREFPASNSGLVVRVNLNTFRVSGSLDLALFHPDLCGFSGAVTVTHFAYFVPYMRVRQPDSEEVNPYSGLVARVDLRDF--TSVQFLDLTIVDTGLRGFMRGFAYRQYVFLVPHRWKFFDPKGPTQSGKVARIDTNDFTPSGIS 587          
BLAST of mRNA_H-paniculata_contig8646.16605.1 vs. uniprot
Match: A0A662XTA7_9STRA (FH2 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XTA7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.370e-22
Identity = 85/245 (34.69%), Postives = 121/245 (49.39%), Query Frame = 1
Query:  571 FLSPLFNGEDFHGNALQLGNFGNDNVTRFCELDSTLESTSTCLFTVLNLAEVDDDLRGFSGGFLDSGKAYFVPSRNGRGRYAKLVRVDAGTFSADSVEVLDLLKVDSEVGGFFGGFASDGYGYLVPSRSFKGLVGG-INTNLSADGIAGSHLLENEVRVAGHLE-SSYSGKLVRVNLTDFSVTGVEVLDLTKVDPDLRGFTGGFAAGHWGFLVPFKNK--EVDDE-YSGKMVRFDRRTFDLASVT 1290
            +L P FNG  +  + +++             L ST  S S  + T L+LA V  +L+GF   F D    Y VP  N  G +  LVR     F  +SVEVLDL  V+    GF   F    + +LVP R  + L G  +  NL    ++ S L+   V+ +   E + YSG + RV+L DF  T V  LDLT +  +LRGF  GFA   +  LVP +++   V+ +  SGK+VR D   F  + V+
Sbjct:  870 YLVPFFNGVSYASSVIRV-------------LASTFSSMSPIVET-LSLASVSANLKGFGASFTDDSYGYLVPRENENGLFGTLVRFPLENFVPESVEVLDLAAVNPRFVGFSSAFTYGNFAFLVPFR--RPLEGDELTQNLREFPVSNSGLVVRRVKESASQELNPYSGLIARVDLRDF--TSVSFLDLTAIHSELRGFMRGFAYRQYVILVPHRSEFYRVNGQSQSGKVVRIDTTGFSASGVS 1096          
BLAST of mRNA_H-paniculata_contig8646.16605.1 vs. uniprot
Match: R1E373_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E373_EMIHU)

HSP 1 Score: 110 bits (274), Expect = 4.070e-22
Identity = 79/268 (29.48%), Postives = 125/268 (46.64%), Query Frame = 1
Query:  499 ADGDSSLVGYWGGFSGEVDGSALGFLSPLFNGEDFHGNALQLGNFGNDNVTRFCELDSTLESTSTCLFTVLNLAEVDDDLRGFSGGFLDSGKAYFVPSRNGRGRYAKLVRVDAGTFSADSVEVLDLLKVDSEVGGFFGGFASDGYGYLVPSR--SFKGLVGGIN-TNLSADGIAGSHLLENEVRVAGHLES---------------SYSGKLVRVNLTDFSVTGVEVLDLTKVDPDLRGFTGGFAAGHWGFLVPFKNKEVDDEYSGKM 1248
            AD +S+L G+ GG+  +       +  P  NG  + G A ++                +L   S+     LNLA+ + +L+GF GGF     AY++P++N  GR     RV    FS   VE L+L   +S + GF GGFA+D + Y VP +  S  G    +N ++ S+ G+   +L +    + G                   + SG   RV+L+DFS +GVE L+L   + +L+G  GGFA     + VP+ N      Y+ ++
Sbjct:  695 ADTNSNLKGFQGGYVTDTHA----YYVPYSNGAAYSGYAARV----------------SLSDFSSSGVEYLNLADTNPNLKGFFGGFATDAHAYYLPNKNDGGRNGYAARVSLSDFSNSGVEYLNLADTNSNLKGFNGGFATDAHAYFVPDKNGSPHGYAARVNLSDFSSSGVEYLNLADTNSNLRGFGRGFATDAHAYYAPWDYGARSGYAARVSLSDFSSSGVEYLNLADTNSNLKGLNGGFATATHAYYVPYHNGGAFHGYAARV 942          
BLAST of mRNA_H-paniculata_contig8646.16605.1 vs. uniprot
Match: G4YU93_PHYSP (Apple domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YU93_PHYSP)

HSP 1 Score: 108 bits (270), Expect = 1.050e-21
Identity = 133/492 (27.03%), Postives = 204/492 (41.46%), Query Frame = 1
Query:   46 ESPSLYPAGGTYYHPVAVSLVSNS--GALIFYTTDGTEPSE----SSDVVSSGELIVIEESGTLRATAAPTRSTFSAFSSEEVQ-ATFVVYSEGKC---GYAYFVPDFTRTGYSGKVVEVDLQTAELGKVRLHSV-VTDFADFYSDLGVGPYDDQVAVQDLAADGDSSLVGYWGGFSGEVDGSALGFL-------SPLFNGEDF-------------------------HGNALQLGNFGNDNV--TRFCELDSTLESTSTCLFTVLNLAEVDDDLRGFSGGFLDSGKAYFVPSRNGRGRYAKLVRVDAGTFSADSVEVLDLLKVDSEVGGFFGGFASDGYGYLVPSRSF----KGLVGGINTNLSADGIAGSHLLEN------------------------EVRVAGHLE-SSYSGKLVRVNLTDFSVTGVEVLDLTKVDPDLRGFTGGFAAGHWGFLVPFKNKEVDDE---YSGKMVRFDRRTFDLASVT 1290
            ++P + P+GG     + V L++     AL +     TE +     +SD+  +G+   I  SG +      +   F+    E +  +T +V +E +     Y Y VP F    Y G+V  ++L +   GK R       +F+D+ +  GVGPYD+QV V D+AA  D    G++ GF+     + +           P +N  ++                         H   L L  F N  +  ++   + +   +++T +   L++  +D  L+GF   F      Y VP  N  G + KLVR     F+A SVEVLDL  +D    GF   F  D     +  R F     GLV  +  +LS   + GS                              V+     E + YSG + RV+L DFS   V+ L+LT VD  LRGF  GFA   + FLVP ++   D      SGK+ R D   F  + V+
Sbjct:   96 DAPEIEPSGGLVNTQIVVRLLTAKLGAALHYQVIPSTELASRNLTASDLFGAGQNFSIAASGDVITLPTYSCKLFAIAVKEGMDDSTLIVSNEYQIFPSKYVYLVPYFNGE-YHGRVARIELDSK--GKKRPRPARFLEFSDYETPNGVGPYDNQVDVIDMAAL-DLVFKGFYSGFTALSKATFVNETYVVPAADDPNYNTTEWRLALKAQYTPSTSHSGFGIPAEIEQHVEYLYLVPFYNGTIYASKVLRVMALTFASATPIVETLDVGSLDKSLKGFGSSFTVGSYGYLVPRENEFGLFGKLVRFRVDNFAASSVEVLDLAAIDPRYVGFSSAFTCDEL--TMNLREFPVSNSGLV--VRIDLSTFRVTGSXXXXXXXXXXXXXXXXVTVTHFAYFVPYMRVKAPDSQELNPYSGLVGRVDLRDFS--SVQYLNLTAVDSGLRGFKKGFAYRQYVFLVPHRSSFYDTSKPTQSGKVARIDTNDFSSSGVS 577          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8646.16605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKI0_ECTSI7.690e-19166.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1PSV2_HETAK5.220e-4547.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4E8S4_9STRA8.970e-3034.85Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2RTQ0_9STRA2.590e-2842.13Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2DPP0_9STRA1.380e-2743.92Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6H5KG48_9PHAE1.150e-2581.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D0N386_PHYIT1.200e-2428.37Apple domain-containing protein n=2 Tax=Phytophtho... [more]
A0A662XTA7_9STRA3.370e-2234.69FH2 domain-containing protein (Fragment) n=1 Tax=N... [more]
R1E373_EMIHU4.070e-2229.48Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
G4YU93_PHYSP1.050e-2127.03Apple domain-containing protein n=1 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8646contigH-paniculata_contig8646:6056..10050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score557.0
Seed ortholog evalue7.8e-156
Seed eggNOG ortholog2880.D7FKI0
Hectar predicted targeting categoryother localisation
EggNOG OGs28HYU@1,2QQ9N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1293
Cds size1293
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8646.16605.1prot_H-paniculata_contig8646.16605.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8646 6056..10050 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.804432-CDS-H-paniculata_contig8646:6055..62261622931087.804432-CDS-H-paniculata_contig8646:6055..6226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 6056..6226 -
1691481584.2462845-CDS-H-paniculata_contig8646:6055..62261691481584.2462845-CDS-H-paniculata_contig8646:6055..6226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 6056..6226 -
1622931087.820901-CDS-H-paniculata_contig8646:6593..67521622931087.820901-CDS-H-paniculata_contig8646:6593..6752Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 6594..6752 -
1691481584.262284-CDS-H-paniculata_contig8646:6593..67521691481584.262284-CDS-H-paniculata_contig8646:6593..6752Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 6594..6752 -
1622931087.835679-CDS-H-paniculata_contig8646:7003..71021622931087.835679-CDS-H-paniculata_contig8646:7003..7102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 7004..7102 -
1691481584.2736974-CDS-H-paniculata_contig8646:7003..71021691481584.2736974-CDS-H-paniculata_contig8646:7003..7102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 7004..7102 -
1622931087.8515103-CDS-H-paniculata_contig8646:7503..76441622931087.8515103-CDS-H-paniculata_contig8646:7503..7644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 7504..7644 -
1691481584.2831457-CDS-H-paniculata_contig8646:7503..76441691481584.2831457-CDS-H-paniculata_contig8646:7503..7644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 7504..7644 -
1622931087.864301-CDS-H-paniculata_contig8646:7852..79601622931087.864301-CDS-H-paniculata_contig8646:7852..7960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 7853..7960 -
1691481584.2912498-CDS-H-paniculata_contig8646:7852..79601691481584.2912498-CDS-H-paniculata_contig8646:7852..7960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 7853..7960 -
1622931087.8757563-CDS-H-paniculata_contig8646:8876..90141622931087.8757563-CDS-H-paniculata_contig8646:8876..9014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 8877..9014 -
1691481584.2993195-CDS-H-paniculata_contig8646:8876..90141691481584.2993195-CDS-H-paniculata_contig8646:8876..9014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 8877..9014 -
1622931087.887028-CDS-H-paniculata_contig8646:9202..93751622931087.887028-CDS-H-paniculata_contig8646:9202..9375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 9203..9375 -
1691481584.3085449-CDS-H-paniculata_contig8646:9202..93751691481584.3085449-CDS-H-paniculata_contig8646:9202..9375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 9203..9375 -
1622931087.8984175-CDS-H-paniculata_contig8646:9746..100501622931087.8984175-CDS-H-paniculata_contig8646:9746..10050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 9747..10050 -
1691481584.3197975-CDS-H-paniculata_contig8646:9746..100501691481584.3197975-CDS-H-paniculata_contig8646:9746..10050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 9747..10050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8646.16605.1

>prot_H-paniculata_contig8646.16605.1 ID=prot_H-paniculata_contig8646.16605.1|Name=mRNA_H-paniculata_contig8646.16605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=431bp
TTEDPRRSLAVTTPTESPSLYPAGGTYYHPVAVSLVSNSGALIFYTTDGT
EPSESSDVVSSGELIVIEESGTLRATAAPTRSTFSAFSSEEVQATFVVYS
EGKCGYAYFVPDFTRTGYSGKVVEVDLQTAELGKVRLHSVVTDFADFYSD
LGVGPYDDQVAVQDLAADGDSSLVGYWGGFSGEVDGSALGFLSPLFNGED
FHGNALQLGNFGNDNVTRFCELDSTLESTSTCLFTVLNLAEVDDDLRGFS
GGFLDSGKAYFVPSRNGRGRYAKLVRVDAGTFSADSVEVLDLLKVDSEVG
GFFGGFASDGYGYLVPSRSFKGLVGGINTNLSADGIAGSHLLENEVRVAG
HLESSYSGKLVRVNLTDFSVTGVEVLDLTKVDPDLRGFTGGFAAGHWGFL
VPFKNKEVDDEYSGKMVRFDRRTFDLASVTV
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mRNA from alignment at H-paniculata_contig8646:6056..10050-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8646.16605.1 ID=mRNA_H-paniculata_contig8646.16605.1|Name=mRNA_H-paniculata_contig8646.16605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3995bp|location=Sequence derived from alignment at H-paniculata_contig8646:6056..10050- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTACTGAGGACCCAAGACGGTCCCTGGCGGTCACAACCCCCACAGAAAG TCCTTCTCTCTACCCGGCAGGGGGGACGTACTACCATCCGGTCGCTGTAT CTCTCGTGTCCAATAGCGGGGCGCTCATTTTCTACACCACAGACGGAACT GAGCCAAGCGAGAGCTCGGACGTGGTAAGCTCTGGTGAGCTGATTGTGAT AGAAGAGTCGGGCACACTACGGGCGACGGCAGCGCCCACTCGCTCGACCT TCTCTGCGTTTTCATCGGAGGAGGTACAGGCTACCTTCGTTGTCTACTCC GAAGGTGAAGCTGGATACAAGTATGTTCAATGAAGCTACTTTCCAAGAAT GTATACGTTCCTGATCGCCCTCTCGCAGACTCTGCGTTCGTGAATGCCCT CCGGTAGTTTGACCTGATCACGAGCTGTCTGGTCGCAACTTCGTTCATTA TCTTGTCGTGGACCAGCTCAGTCATACCCATTACAATGGAAATTACATTT CTCTCCTCTCATAGGCTATGGTTTAACTCTAACAAAAAATTATATGATCC GCTATTATCAAGATGATCATACAGCATTTTCGCCAGTTGTGCGCAGAGAA ACGTAATTGTCGCGGCTATCTTCCCTGCTCATGAAGAGCTCCAATCTGTC CTCCTTTTTGTCAACATACGTTCAGGGAAGTGTGGTTATGCCTATTTTGT GCCCGATTTCACTCGCACGGGCTATTCGGGAAAGGTGGTGGAGGTTGACT TGCAGACCGCGGAACTTGGAAAAGTTCGACTTCATAGCGTGGTGACAGAC TTTGCCGACTTCTATTCTGATTTGGGGGTCGGCCCTTATGACGACCAGGT ATTAAAGTAGATGTTGCAGCCCATACCTGTACTTCCTACATTGTACCGTA TTTGGTCTGTGCATGCTATGTGATACTCAATCGTACGCTGACCTGTTTTT GTTGCATATTGGTTGCTGATCATATTCAGTTTTCTCATTTCCTCATGGTG GTTTACGTTTGGCTTGGCGTGTCGTGTTGCGTGAAGGTGGCAGTGCAAGA TTTAGCAGCTGATGGCGACTCTTCCCTTGTAGGGTATTGGGGAGGATTTA GTGGGGAGGTCGATGGGTCTGCCCTCGGCTTTCTCAGTCCACTTTTTAAC GGAGAAGACTTTCACGGCAATGCTGTTCAGGCGAGTGATATGTTCTTTTT GTCGCAAGAAGTAGAATCAGAGCACATTGGATATGCCGCAGCCTCTTCAT TGATCAGGGATACCTTCGAGAAAGTGCCATGACCCCGTCACGGTAACGAT ATCCAATCTTTATTGAAGGATCGACGATACGCTAGTTCTTTGTTATAGAT ACACCACCAGCAAGAACATCAAAATCTAGATTTCGGCCTCCGATTTGGGC GGCAGAATGGGATGAAGTTATCCCCGTCCCCATCGTGCAATGGAGATAAT CACAAGCAACATCAAGGGATGAACACTACGCAGATTTCTCCGGTGGATGT GTATCTGTAAGGGAGAGAACAATCGATTGGATGTCTAACATGTACGTGGT GAGAAGAAAAATATTGTTGTGTGAAGATCCTTGATACTATCGAGGATCTT AATGATCGATATCGCTAATATGAAGGCCCTCGTTGTCCACCAAAGTCTCT GATGAGTTGCGCTGAAGCTCTTTCGTGTTGTGTGGGTAAGAAGAATATTC CCGGCTAAGAGGCAAGCATTCCAGAGTGCAGTGTGGAGAGGGAGCACCTC TTCGGAACCCTGTCTCAGGGCCCCTGACCAGCATTGGTATATGAAGATCC GTGGGTTTGGCGGTTAAAACAAAAGTCTCACGACTAGAAGCCCCATGTGA CAATTCTGAAATCGACGATGGATTTGTATCTTCATCTATGGCATGCGTGT AATTGAATCTCCAATATGAGCTACTTCTTCGAAGACACCAGTTTCCACAG TCGTGCCTGAATGATGTCAAGTATCTGGTGGGATTCCGTGTTTGATGCCA CTGAAATGATGCCTGAATGGCCGTGCTGTCTAACACTGCACGCACCGTCT TAGACTCGGATTGCTGTACTTGCACGTTCGTTCTGTGCAGCTTCAATTGG GCAATTTCGGAAACGACAACGTAACTCGCTTTTGCGAGTTGGATTCTACC CTTGAATCAACATCCACGTGCCTATTTACCGTGTTGAATCTAGCAGAGGT GAGCAACCAACGAACAACAGATAAAGACGCAATCTTGAAGAAATAGTGAT AAGGATATGCCTCCACAGGAGATACCTGTCTGACAGTCAAACGCCGATGC TGTCAATTGAGATATTCAAAATGTTTTCAATTATGTGCGTAAACAGGTAT CATATGTGTGACCAGATCCGCATTTTTACTCATATTATTTGGTTACTTCT GAAAAGGTGGATGATGACCTGCGTGGATTCAGCGGGGGTTTTCTTGATAG CGGTAAGGCGTATTTCGTCCCTTCTCGCAACGGTCGTGGAAGATATGCCA AGTTGGTGCGGGTGGATGCTGGAACCTTCTCTGCCGATAGCGTCGAGGTA CGAATAGAGTATGACCAAAGAAGATATGGTGATAATCCCGGAGCAACTCA TGTACGTACAACATTAGAGGCGCTTGTGGCGTTAGCTCCGCTGGCAGCAG AGCCAAGTACCTCTGGTGGCTACTTTTACCTTTATACAAACACAAACACT AGAATATCTACACTTATTTTGCTAACAAGAGGAATACGTACTGGCTGTTT ATCAGCCGCAATGCCGATGTCGCCTGTTGTTGGCCCCGAGATTTTGGGCT GAGGCATACCTCGGTGCACCACTTTGCATCACACGTAAACACCATATAGG ACATGGCGTATTTTTCATTGGTCACTACTGTGCGTTTCCCGGCACTTTCA GGTGTCCCATTTCGTGAACATCCTGGGCCATTCTTTCGCATCGCGCAGGT CCTAGATCTGCTAAAGGTAGACTCTGAGGTTGGGGGGTTCTTCGGAGGAT TCGCGTCAGACGGGTACGGCTACCTTGTCCCCTCCAGGTCGTTCAAGGTG CGGTTCCTTACATGTGAAAGAGCGTTCCGTCAGACGTTGACCGAACGCCA TATTCTTGCGTTATTTACGAGGGAGACGCGGGGAATTACTCCTCGCAAGT CCTGTACTACTAACGTTGTTCTGGATAAGGAATAGATATGCGTACATATA ATGCGGGGACCAGACAGATCAATTGGATCCTTTTTGCATCGTACCCTACG ATAGACAGCAGTACAACCCAAACCCTCCCTGCCTGAACCGTCGAATAGGG CCTGGTGGGGGGGATAAACACAAATTTGAGCGCCGATGGTATTGCGGGTT CTCATCTGCTCGAAAATGAAGTTCGAGTGGCGGGGCACCTGGAATCATCT TACTCAGGGAAATTGGTTCGAGTTAATCTTACCGATTTCTCTGTCACAGG GGTGGAGGTGCGTGGCGTACGCAAGGAAACGGGGGCAATAGGGAATGGGA ATATGTTCATGAGATGAACATGAATCGAAACACCTACGGGCTATAGTCGT TGTTACGTGTTTTCTCTGTTGTTGGTCTTGTGGCAATCCAGTAGGTGGAA TCACGGTGTTTCGACCTTTGTGTTGTGTGTTAAACGTTTGCATGATGCCC AGCGCCATCGACTGAACAGCTAGGTATGACTCAAATGATTATTCTCCATC CCACCCGACATCGTATTCGCTCAGAAAGACAGAAGGGCTATCCGAAAGTC TGCGACAGATGATCCAGGGAAATGTTCAACGCTCTTCGGGCTACAACAGA CGTGCACACGTAATTCTCATGTAGGTGTTGGACTTGACTAAGGTCGATCC CGACCTTCGAGGCTTCACCGGGGGATTCGCCGCGGGACATTGGGGATTCC TCGTGCCTTTCAAAAACAAAGAGGTCGATGACGAGTATTCGGGGAAGATG GTCCGGTTCGATCGACGCACGTTCGACCTTGCCAGCGTAACGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig8646:6056..10050-

>mRNA_H-paniculata_contig8646.16605.1 ID=mRNA_H-paniculata_contig8646.16605.1|Name=mRNA_H-paniculata_contig8646.16605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2586bp|location=Sequence derived from alignment at H-paniculata_contig8646:6056..10050- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTACTGAGGACCCAAGACGGTCCCTGGCGGTCACAACCCCCACAGAAAG
TCCTTCTCTCTACCCGGCAGGGGGGACGTACTACCATCCGGTCGCTGTAT
CTCTCGTGTCCAATAGCGGGGCGCTCATTTTCTACACCACAGACGGAACT
GAGCCAAGCGAGAGCTCGGACGTGGTAAGCTCTGGTGAGCTGATTGTGAT
AGAAGAGTCGGGCACACTACGGGCGACGGCAGCGCCCACTCGCTCGACCT
TCTCTGCGTTTTCATCGGAGGAGGTACAGGCTACCTTCGTTGTCTACTCC
GAAGACTACTGAGGACCCAAGACGGTCCCTGGCGGTCACAACCCCCACAG
AAAGTCCTTCTCTCTACCCGGCAGGGGGGACGTACTACCATCCGGTCGCT
GTATCTCTCGTGTCCAATAGCGGGGCGCTCATTTTCTACACCACAGACGG
AACTGAGCCAAGCGAGAGCTCGGACGTGGTAAGCTCTGGTGAGCTGATTG
TGATAGAAGAGTCGGGCACACTACGGGCGACGGCAGCGCCCACTCGCTCG
ACCTTCTCTGCGTTTTCATCGGAGGAGGTACAGGCTACCTTCGTTGTCTA
CTCCGAAGGGAAGTGTGGTTATGCCTATTTTGTGCCCGATTTCACTCGCA
CGGGCTATTCGGGAAAGGTGGTGGAGGTTGACTTGCAGACCGCGGAACTT
GGAAAAGTTCGACTTCATAGCGTGGTGACAGACTTTGCCGACTTCTATTC
TGATTTGGGGGTCGGCCCTTATGACGACCAGGGAAGTGTGGTTATGCCTA
TTTTGTGCCCGATTTCACTCGCACGGGCTATTCGGGAAAGGTGGTGGAGG
TTGACTTGCAGACCGCGGAACTTGGAAAAGTTCGACTTCATAGCGTGGTG
ACAGACTTTGCCGACTTCTATTCTGATTTGGGGGTCGGCCCTTATGACGA
CCAGGTGGCAGTGCAAGATTTAGCAGCTGATGGCGACTCTTCCCTTGTAG
GGTATTGGGGAGGATTTAGTGGGGAGGTCGATGGGTCTGCCCTCGGCTTT
CTCAGTCCACTTTTTAACGGAGAAGACTTTCACGGCAATGCTGTGGCAGT
GCAAGATTTAGCAGCTGATGGCGACTCTTCCCTTGTAGGGTATTGGGGAG
GATTTAGTGGGGAGGTCGATGGGTCTGCCCTCGGCTTTCTCAGTCCACTT
TTTAACGGAGAAGACTTTCACGGCAATGCTCTTCAATTGGGCAATTTCGG
AAACGACAACGTAACTCGCTTTTGCGAGTTGGATTCTACCCTTGAATCAA
CATCCACGTGCCTATTTACCGTGTTGAATCTAGCAGAGCTTCAATTGGGC
AATTTCGGAAACGACAACGTAACTCGCTTTTGCGAGTTGGATTCTACCCT
TGAATCAACATCCACGTGCCTATTTACCGTGTTGAATCTAGCAGAGGTGG
ATGATGACCTGCGTGGATTCAGCGGGGGTTTTCTTGATAGCGGTAAGGCG
TATTTCGTCCCTTCTCGCAACGGTCGTGGAAGATATGCCAAGTTGGTGCG
GGTGGATGCTGGAACCTTCTCTGCCGATAGCGTCGAGGTGGATGATGACC
TGCGTGGATTCAGCGGGGGTTTTCTTGATAGCGGTAAGGCGTATTTCGTC
CCTTCTCGCAACGGTCGTGGAAGATATGCCAAGTTGGTGCGGGTGGATGC
TGGAACCTTCTCTGCCGATAGCGTCGAGGTCCTAGATCTGCTAAAGGTAG
ACTCTGAGGTTGGGGGGTTCTTCGGAGGATTCGCGTCAGACGGGTACGGC
TACCTTGTCCCCTCCAGGTCGTTCAAGGTCCTAGATCTGCTAAAGGTAGA
CTCTGAGGTTGGGGGGTTCTTCGGAGGATTCGCGTCAGACGGGTACGGCT
ACCTTGTCCCCTCCAGGTCGTTCAAGGGCCTGGTGGGGGGGATAAACACA
AATTTGAGCGCCGATGGTATTGCGGGTTCTCATCTGCTCGAAAATGAAGT
TCGAGTGGCGGGGCACCTGGAATCATCTTACTCAGGGAAATTGGTTCGAG
TTAATCTTACCGATTTCTCTGTCACAGGGGTGGAGGGCCTGGTGGGGGGG
ATAAACACAAATTTGAGCGCCGATGGTATTGCGGGTTCTCATCTGCTCGA
AAATGAAGTTCGAGTGGCGGGGCACCTGGAATCATCTTACTCAGGGAAAT
TGGTTCGAGTTAATCTTACCGATTTCTCTGTCACAGGGGTGGAGGTGTTG
GACTTGACTAAGGTCGATCCCGACCTTCGAGGCTTCACCGGGGGATTCGC
CGCGGGACATTGGGGATTCCTCGTGCCTTTCAAAAACAAAGAGGTCGATG
ACGAGTATTCGGGGAAGATGGTCCGGTTCGATCGACGCACGTTCGACCTT
GCCAGCGTAACGGTAGTGTTGGACTTGACTAAGGTCGATCCCGACCTTCG
AGGCTTCACCGGGGGATTCGCCGCGGGACATTGGGGATTCCTCGTGCCTT
TCAAAAACAAAGAGGTCGATGACGAGTATTCGGGGAAGATGGTCCGGTTC
GATCGACGCACGTTCGACCTTGCCAGCGTAACGGTA
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