mRNA_H-paniculata_contig864.16600.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig864.16600.1
Unique NamemRNA_H-paniculata_contig864.16600.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig864.16600.1 vs. uniprot
Match: A0A6H5KU66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU66_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.270e-7
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 2 
Query:    8 ARAALLMASATFLEKILHMRSFPRMKALRCFSAAMRCRR 124
            AR AL MASATFLE+++ M  FPRMKA+RCFSA++RC R
Sbjct:  581 ARCALAMASATFLEEVMGMGGFPRMKAMRCFSASLRCGR 619
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig864.16600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KU66_9PHAE1.270e-769.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig864contigH-paniculata_contig864:17823..19462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.0762944-CDS-H-paniculata_contig864:17822..179991622931087.0762944-CDS-H-paniculata_contig864:17822..17999Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig864 17823..17999 -
1691481583.9341617-CDS-H-paniculata_contig864:17822..179991691481583.9341617-CDS-H-paniculata_contig864:17822..17999Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig864 17823..17999 -
1622931087.1222966-CDS-H-paniculata_contig864:19396..194621622931087.1222966-CDS-H-paniculata_contig864:19396..19462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig864 19397..19462 -
1691481583.9447336-CDS-H-paniculata_contig864:19396..194621691481583.9447336-CDS-H-paniculata_contig864:19396..19462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig864 19397..19462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig864.16600.1prot_H-paniculata_contig864.16600.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig864 17823..19462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig864.16600.1

>prot_H-paniculata_contig864.16600.1 ID=prot_H-paniculata_contig864.16600.1|Name=mRNA_H-paniculata_contig864.16600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
GDRTGGAVDGVCNIPGKDLAYEEFPTNEGFTVLQRCHALPAHPRPVRWRQ
EKLFGDAPLPIRLGRRLGAEMGQGRRRGWRG
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mRNA from alignment at H-paniculata_contig864:17823..19462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig864.16600.1 ID=mRNA_H-paniculata_contig864.16600.1|Name=mRNA_H-paniculata_contig864.16600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1640bp|location=Sequence derived from alignment at H-paniculata_contig864:17823..19462- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGACCGCACGGGCGGCGCTGTTGATGGCGTCTGCAACATTCCTGGAAA
AGATCTTGCATATGAGGTTGGTTGAAAAAATGACGTTGAAATGTAGTAGT
GTGCCAGTGACTCCTGCTCCTTCGCGAGCTGTAAACAGACCAGTAGTTTA
TGTAAATCAGATCCTCCCCCCCCCCCCCCTCCCCCTTCCCCTGTGCCTAT
CATTGTCAGCACGCTAGCGTGTCGAGTGATCGTGATAAAAACGACTGTGT
TTTTTTTTTCTCGTTTGTATGTGAAATGCATCATTTGAGTTACACAATAC
AGCATAAAAAAACACACATATGTACCAGGTTGCAAGTAGTAAGAGCTGAA
TTGCCTAGTACGGCATTGAAGTATGATCGGTTTGACCCCTGTCAGTAAAT
ACATTCATCACCCCCATGAGGCGAAAAGCTAGGTCCTAGGAGCATCCCCC
ACAAATGTTTCATGTGTTTAAGGTGCGAATTATTGAGCCAGGGAGGGGGA
CTCTGAATGAGTTCGTCATTTACACACAGCACATGCCTTTTGAAAGACGA
GTATTAGGGTACATATCGCCACGGCCGGCAACGCTCCGTGCAGTTTGTGT
GTCTATCCTCGACCCACGCACTCGCTGTGCTCACTGTGGCTCGCTACGTC
GCATGAAGATTGGTATTTCAGGAGTTACTCGAGTACAGAGTTGAACAGCT
GACTGAGATTACGATTGCCACTACCACCTTTCAGCATTAAATAATAGAGA
TTTCGGGCCTCGTAATGGCCAAAATAAACATCACGATAGTTTTTAGGGGA
AAAATAACTGCATACGAAATGGTCTAGGCCCGTATGACGGTGCTCGATGA
GCATTCACTCTGTCCCAAAATACCAAAATCTGTTGCTGGTTTATCCACTT
GCTTCGTTGTGTTTATGCTGGAGGCTGTGTTTTTGGGGGGGGCACGGGGA
AGGCATGTGGAAGGAATGAGACAAGAGCCGAGATGTGTGAGGTCGTGATA
AAGAAGAAACGCCTTGGCCTTGCCTGTAAAAACGGATAATACATTGCCTG
ACGATTGCGCCCACTTTGTATATGCCCACATTATTCCCCATGTGTCTTCG
GGGAAGTAAAATAAAAAACGTTACGACAATACTTCAGAATTCCTTCGAAA
ATCGAAACTGTTTTTATTGTTAGACGCCAATTGCTTGTAAGTAATATGGC
CTGATTCTTGCCCTGAACGTCCCCTGCTGGGAAACAAGTCATGGACAATT
TTTTTTTGTCTCAACCCCCCTCCCCCCCATTCCGCCTAATAACTCCATAC
CCACCTCCCTCCTTCCCCCTGCTCGAGAGCGATTGGTAATAGAGAATCGC
TCTTATAGGAACAAAGCTCCGTCCTCCCGAAGATGCCTGGTCAATGGTTT
AACAACTACTATATTCACAACATGAGCATCCCCTGCCCCCTCTTCCATCT
ATGATGCCATCAGGAGTTTCCCACGAATGAAGGCTTTACGGTGCTTCAGC
GCTGCCATGCGCTGCCGGCGCATCCCCGGCCAGTTCGATGGAGGCAGGAA
AAACTATTCGGGGATGCCCCCCTGCCCATTCGCCTCGGAAGACGCCTTGG
CGCAGAGATGGGACAGGGACGGCGGCGGGGATGGAGGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig864:17823..19462-

>mRNA_H-paniculata_contig864.16600.1 ID=mRNA_H-paniculata_contig864.16600.1|Name=mRNA_H-paniculata_contig864.16600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig864:17823..19462- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGACCGCACGGGCGGCGCTGTTGATGGCGTCTGCAACATTCCTGGAAA
AGATCTTGCATATGAGGGAGACCGCACGGGCGGCGCTGTTGATGGCGTCT
GCAACATTCCTGGAAAAGATCTTGCATATGAGGAGTTTCCCACGAATGAA
GGCTTTACGGTGCTTCAGCGCTGCCATGCGCTGCCGGCGCATCCCCGGCC
AGTTCGATGGAGGCAGGAAAAACTATTCGGGGATGCCCCCCTGCCCATTC
GCCTCGGAAGACGCCTTGGCGCAGAGATGGGACAGGGACGGCGGCGGGGA
TGGAGGGGCGAGTTTCCCACGAATGAAGGCTTTACGGTGCTTCAGCGCTG
CCATGCGCTGCCGGCGCATCCCCGGCCAGTTCGATGGAGGCAGGAAAAAC
TATTCGGGGATGCCCCCCTGCCCATTCGCCTCGGAAGACGCCTTGGCGCA
GAGATGGGACAGGGACGGCGGCGGGGATGGAGGGGC
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