mRNA_H-paniculata_contig8635.16594.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8635.16594.1
Unique NamemRNA_H-paniculata_contig8635.16594.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8635.16594.1 vs. uniprot
Match: D7FP12_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP12_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 5.310e-18
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:   55 RSNFLHCTRCEGLKVPLRSHHCRLCGRCVATFDXXXXXXXXXXGERNHCRFWW 213
            R +F+ C RC+ +KVPLRSHHCR CGRCVATFDXXXXXXXXXXGERNHCRFWW
Sbjct:  172 RPDFVRCRRCQDMKVPLRSHHCRECGRCVATFDXXXXXXXXXXGERNHCRFWW 224
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BLAST of mRNA_H-paniculata_contig8635.16594.1 vs. uniprot
Match: A0A6H5KZD6_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD6_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 5.360e-17
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:   55 RSNFLHCTRCEGLKVPLRSHHCRLCGRCVATFDXXXXXXXXXXGERNHCRFWW 213
            R +F+ C RC+ ++VPLRSHHCR CGRCVATFDXXXXXXXXXXGERNHCRFWW
Sbjct:  171 RPDFVRCRRCQDMEVPLRSHHCRACGRCVATFDXXXXXXXXXXGERNHCRFWW 223
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BLAST of mRNA_H-paniculata_contig8635.16594.1 vs. uniprot
Match: A0A8K1CMD2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMD2_PYTOL)

HSP 1 Score: 65.9 bits (159), Expect = 7.070e-11
Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   73 CTRCEGLKVPLRSHHCRLCGRCVATFDXXXXXXXXXXGERNHCRFWW 213
            C  C+ L  PLRSHHCR CG+CVATFDXXX       GE+NHCRFWW
Sbjct:  159 CEHCD-LFPPLRSHHCRPCGKCVATFDXXXFVLATCIGEKNHCRFWW 204
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BLAST of mRNA_H-paniculata_contig8635.16594.1 vs. uniprot
Match: A0A7S0GL60_9STRA (Palmitoyltransferase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GL60_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.200e-10
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   73 CTRCEGLKVPLRSHHCRLCGRCVATFDXXXXXXXXXXGERNHCRFWW 213
            C  C  +  PLR+HHCR+C +CVATFDXXXXXXXXX GERNHCRFWW
Sbjct:  178 CQTCN-IMPPLRAHHCRICDKCVATFDXXXXXXXXXIGERNHCRFWW 223
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BLAST of mRNA_H-paniculata_contig8635.16594.1 vs. uniprot
Match: A0A5D6XK82_9STRA (HDAC_interact domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XK82_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 7.730e-9
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   40 ASLSNRSNFLHCTRCEGLKVPLRSHHCRLCGRCVATFDXXXXXXXXXXGERNHCRFWW 213
            A+   R+  LH      L+ PLRS HCR CG+CVA FD XXXXXXXXXGERNH RFWW
Sbjct:    4 ATAERRARSLH------LQQPLRSQHCRTCGKCVAKFDHXXXXXXXXXGERNHARFWW 55
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BLAST of mRNA_H-paniculata_contig8635.16594.1 vs. uniprot
Match: K3WZV3_GLOUD (Palmitoyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZV3_GLOUD)

HSP 1 Score: 52.8 bits (125), Expect = 2.830e-6
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  100 PLRSHHCRLCGRCVATFDXXXXXXXXXXGERNHCRFWW 213
            PLRSHHC +CGRCVA FDXXXXXXXXXX  +NH RFWW
Sbjct:  252 PLRSHHCFVCGRCVAKFDXXXXXXXXXXXXKNHARFWW 289
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8635.16594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FP12_ECTSI5.310e-1883.02Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KZD6_9PHAE5.360e-1781.13Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
A0A8K1CMD2_PYTOL7.070e-1165.96Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S0GL60_9STRA3.200e-1074.47Palmitoyltransferase n=1 Tax=Proboscia inermis Tax... [more]
A0A5D6XK82_9STRA7.730e-963.79HDAC_interact domain-containing protein n=1 Tax=Py... [more]
K3WZV3_GLOUD2.830e-681.58Palmitoyltransferase n=1 Tax=Globisporangium ultim... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8635contigH-paniculata_contig8635:118..1285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D7FP12
Preferred namePFA4
KEGG koko:K18932
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006464,GO:0006497,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016409,GO:0016740,GO:0016746,GO:0016747,GO:0018345,GO:0019538,GO:0031224,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1314@2759
EC2.3.1.225
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size216
Cds size216
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931086.629067-CDS-H-paniculata_contig8635:117..2371622931086.629067-CDS-H-paniculata_contig8635:117..237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8635 118..237 -
1691481583.73251-CDS-H-paniculata_contig8635:117..2371691481583.73251-CDS-H-paniculata_contig8635:117..237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8635 118..237 -
1622931086.646385-CDS-H-paniculata_contig8635:1189..12851622931086.646385-CDS-H-paniculata_contig8635:1189..1285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8635 1190..1285 -
1691481583.7468352-CDS-H-paniculata_contig8635:1189..12851691481583.7468352-CDS-H-paniculata_contig8635:1189..1285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8635 1190..1285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8635.16594.1prot_H-paniculata_contig8635.16594.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8635 118..1285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8635.16594.1

>prot_H-paniculata_contig8635.16594.1 ID=prot_H-paniculata_contig8635.16594.1|Name=mRNA_H-paniculata_contig8635.16594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MCVRACSTNGERAASLSNRSNFLHCTRCEGLKVPLRSHHCRLCGRCVATF
DHHCKMLGTCIGERNHCRFWW*
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mRNA from alignment at H-paniculata_contig8635:118..1285-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8635.16594.1 ID=mRNA_H-paniculata_contig8635.16594.1|Name=mRNA_H-paniculata_contig8635.16594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1168bp|location=Sequence derived from alignment at H-paniculata_contig8635:118..1285- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGTCCGCGCGTGCAGTACGAATGGGGAGCGTGCTGCCAGCTTGTC
CAACAGGTCTAATTTTCTCCACTGCACGCGCTGCGAAGGGCTAAAGGTGA
TGAGATAATTACGATTGACCTTTCCATACGTCCGAAAAAAACAAAACCAG
GTCATGAGTGGGATTAAATTTTAGACGTTAGTACTCTCTGTTCTGTTGTG
TTAAAATTGGACTAAGCATAGTATGCAAGATTCGAATGTGTCCTGCTTAC
GTTTCTGGGAGCGGTCTTTTCTCTGAAATCTTGTGGATCGGCATTAGCGT
TTCTCGAGGGCGTTCTGCAATTTGATTTTGGCATGTGTTTTACACAATAT
TTCATCAATACCTGTTCCGTGAAATAGAGAAGACTTACGAGGTCTTATTC
AATCCTGAGGGTTGGGGGCATTGGTCAGTTACACAACAAAAAGTAAGTGG
TTGCATCACCCAATTCTGTCAAATTAATTCCGGACTATATACGGTGGACC
CTCTACCCATTAGCTCCACAGTACCATTGATCAATACGCATATTAAATAG
TTCATCATCCACTTCTGTGGGTTTCCATTTTTTTTTTGGTTTATGTCTGT
GTGCTGCCCGTATCCGAATTTTTAATACTGTTGGACGTCACGATGAAACA
ATGCTAGTGATTCAAGCCACCGCTACGGTCATGCAGTTATTGGTGCTTGT
TCTCGACGCACGGACTCGCTGTCCTAGCAGTGGGGGCTCGCGTAGCGGAC
GGCGTTTCTGGCCGTGCTCGCATGAAGATTCGTTTTTTCAGGAGTTATTA
CTCGAGTTCAGAATTGAAGAATCGTTTTTTCAGGAGTTATTACTCGAATT
CAAAATTGAAAAAATATGCCTAATCTAGACGACGACGATAACAACTGCGA
CAACTAAATACCTTCTCTTATTATACAAAAATGATAAAAGAAAAAGTGAT
TTTATTGATCCCAATACACCAGTCCTATCCATAGAAGTGATTGATGCCTG
GATTATGATTCAGGGTGCTCGAAACAACTTAACCTTCTCCTACCGCAGGT
GCCGCTCCGGTCTCACCACTGCCGGCTGTGCGGGCGCTGCGTGGCAACGT
TCGACCACCACTGCAAAATGCTGGGCACCTGTATAGGGGAGAGGAATCAC
TGCCGATTTTGGTGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8635:118..1285-

>mRNA_H-paniculata_contig8635.16594.1 ID=mRNA_H-paniculata_contig8635.16594.1|Name=mRNA_H-paniculata_contig8635.16594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig8635:118..1285- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGTCCGCGCGTGCAGTACGAATGGGGAGCGTGCTGCCAGCTTGTC
CAACAGGTCTAATTTTCTCCACTGCACGCGCTGCGAAGGGCTAAAGATGT
GTGTCCGCGCGTGCAGTACGAATGGGGAGCGTGCTGCCAGCTTGTCCAAC
AGGTCTAATTTTCTCCACTGCACGCGCTGCGAAGGGCTAAAGGTGCCGCT
CCGGTCTCACCACTGCCGGCTGTGCGGGCGCTGCGTGGCAACGTTCGACC
ACCACTGCAAAATGCTGGGCACCTGTATAGGGGAGAGGAATCACTGCCGA
TTTTGGTGGTGAGTGCCGCTCCGGTCTCACCACTGCCGGCTGTGCGGGCG
CTGCGTGGCAACGTTCGACCACCACTGCAAAATGCTGGGCACCTGTATAG
GGGAGAGGAATCACTGCCGATTTTGGTGGTGA
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