mRNA_H-paniculata_contig8632.16591.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8632.16591.1
Unique NamemRNA_H-paniculata_contig8632.16591.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8632.16591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8632contigH-paniculata_contig8632:7704..8534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size831
Cds size546
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931086.1884112-UTR-H-paniculata_contig8632:7703..79881622931086.1884112-UTR-H-paniculata_contig8632:7703..7988Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8632 7704..7988 +
1691481583.501956-UTR-H-paniculata_contig8632:7703..79881691481583.501956-UTR-H-paniculata_contig8632:7703..7988Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8632 7704..7988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931086.2034843-CDS-H-paniculata_contig8632:7988..85341622931086.2034843-CDS-H-paniculata_contig8632:7988..8534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8632 7989..8534 +
1691481583.5130355-CDS-H-paniculata_contig8632:7988..85341691481583.5130355-CDS-H-paniculata_contig8632:7988..8534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8632 7989..8534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8632.16591.1prot_H-paniculata_contig8632.16591.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8632 7989..8534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8632.16591.1

>prot_H-paniculata_contig8632.16591.1 ID=prot_H-paniculata_contig8632.16591.1|Name=mRNA_H-paniculata_contig8632.16591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=182bp
MSAGSGGLGLASAWRRRWSATLGSMYGMLPQIIADSSGPLGERMRNTFPG
HRWCTHRGRLSALAEQGRVSAKQQAAVLPFRLVAWVHGGRSEDGSLPTPD
IDVLGGHDAPGTICRRLQGKVGNLIHKAKIMTLPSLLNNLPPTGRPPGPN
DPFGGIEPTDTAIARFRSMSENGVLAVQRAQP
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mRNA from alignment at H-paniculata_contig8632:7704..8534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8632.16591.1 ID=mRNA_H-paniculata_contig8632.16591.1|Name=mRNA_H-paniculata_contig8632.16591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=831bp|location=Sequence derived from alignment at H-paniculata_contig8632:7704..8534+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAACGGGGCAGAGCATCTTGCGCGCCTAAAAGCTAATATGCCCGACA
AAAAATCGGCGATGCTGATCACCACAAGTCCAGGGCCCTGCAGACCTTCT
TTCTAAAGAGAGTAATAGAGGCGGAACTCTCCAAACAAGCCTGCACACTA
ACCGAAAATGGCGAACTATGGATGTTGGAGAACATCCTGGAACACCCCTA
ACCAGCAGAAGAACACGCCTTCTTCGACGCGGGCTGCCCGGCGAACCGCC
TCAACCTCCTGCCCTGCCAGCGACTCCGGGCCACCATGTCGGCCGGTTCA
GGGGGGCTGGGACTCGCCTCGGCATGGAGAAGGCGCTGGTCAGCAACGTT
GGGGAGTATGTATGGCATGCTGCCTCAGATAATTGCGGACTCGTCGGGAC
CGTTGGGGGAGCGGATGCGGAACACCTTCCCGGGACACCGATGGTGCACT
CATCGGGGGCGACTCTCCGCGTTGGCGGAACAGGGACGAGTTAGCGCTAA
ACAGCAAGCTGCGGTGCTGCCGTTCCGGCTGGTCGCGTGGGTTCATGGAG
GACGTAGCGAAGACGGATCGCTGCCTACACCGGATATCGACGTTCTAGGA
GGTCACGACGCGCCTGGGACGATCTGCCGTCGGCTGCAAGGGAAGGTCGG
CAATTTGATTCATAAGGCCAAGATAATGACCTTGCCCTCGCTGCTTAACA
ACCTACCCCCGACCGGTAGGCCACCTGGCCCTAATGACCCGTTCGGAGGG
ATCGAGCCGACCGACACGGCTATAGCGAGATTCCGCAGCATGTCGGAGAA
TGGAGTTCTGGCGGTGCAACGGGCACAGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig8632:7704..8534+

>mRNA_H-paniculata_contig8632.16591.1 ID=mRNA_H-paniculata_contig8632.16591.1|Name=mRNA_H-paniculata_contig8632.16591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at H-paniculata_contig8632:7704..8534+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGCCGGTTCAGGGGGGCTGGGACTCGCCTCGGCATGGAGAAGGCG
CTGGTCAGCAACGTTGGGGAGTATGTATGGCATGCTGCCTCAGATAATTG
CGGACTCGTCGGGACCGTTGGGGGAGCGGATGCGGAACACCTTCCCGGGA
CACCGATGGTGCACTCATCGGGGGCGACTCTCCGCGTTGGCGGAACAGGG
ACGAGTTAGCGCTAAACAGCAAGCTGCGGTGCTGCCGTTCCGGCTGGTCG
CGTGGGTTCATGGAGGACGTAGCGAAGACGGATCGCTGCCTACACCGGAT
ATCGACGTTCTAGGAGGTCACGACGCGCCTGGGACGATCTGCCGTCGGCT
GCAAGGGAAGGTCGGCAATTTGATTCATAAGGCCAAGATAATGACCTTGC
CCTCGCTGCTTAACAACCTACCCCCGACCGGTAGGCCACCTGGCCCTAAT
GACCCGTTCGGAGGGATCGAGCCGACCGACACGGCTATAGCGAGATTCCG
CAGCATGTCGGAGAATGGAGTTCTGGCGGTGCAACGGGCACAGCCCATGT
CGGCCGGTTCAGGGGGGCTGGGACTCGCCTCGGCATGGAGAAGGCGCTGG
TCAGCAACGTTGGGGAGTATGTATGGCATGCTGCCTCAGATAATTGCGGA
CTCGTCGGGACCGTTGGGGGAGCGGATGCGGAACACCTTCCCGGGACACC
GATGGTGCACTCATCGGGGGCGACTCTCCGCGTTGGCGGAACAGGGACGA
GTTAGCGCTAAACAGCAAGCTGCGGTGCTGCCGTTCCGGCTGGTCGCGTG
GGTTCATGGAGGACGTAGCGAAGACGGATCGCTGCCTACACCGGATATCG
ACGTTCTAGGAGGTCACGACGCGCCTGGGACGATCTGCCGTCGGCTGCAA
GGGAAGGTCGGCAATTTGATTCATAAGGCCAAGATAATGACCTTGCCCTC
GCTGCTTAACAACCTACCCCCGACCGGTAGGCCACCTGGCCCTAATGACC
CGTTCGGAGGGATCGAGCCGACCGACACGGCTATAGCGAGATTCCGCAGC
ATGTCGGAGAATGGAGTTCTGGCGGTGCAACGGGCACAGCCC
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