mRNA_H-paniculata_contig8630.16590.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8630.16590.1
Unique NamemRNA_H-paniculata_contig8630.16590.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8630.16590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8630contigH-paniculata_contig8630:977..3170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size394
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8630.16590.1prot_H-paniculata_contig8630.16590.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8630 1036..3162 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931086.0542228-UTR-H-paniculata_contig8630:976..10351622931086.0542228-UTR-H-paniculata_contig8630:976..1035Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8630 977..1035 +
1691481583.4551313-UTR-H-paniculata_contig8630:976..10351691481583.4551313-UTR-H-paniculata_contig8630:976..1035Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8630 977..1035 +
1622931086.1381388-UTR-H-paniculata_contig8630:3162..31701622931086.1381388-UTR-H-paniculata_contig8630:3162..3170Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8630 3163..3170 +
1691481583.490651-UTR-H-paniculata_contig8630:3162..31701691481583.490651-UTR-H-paniculata_contig8630:3162..3170Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8630 3163..3170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931086.101589-CDS-H-paniculata_contig8630:1035..12601622931086.101589-CDS-H-paniculata_contig8630:1035..1260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8630 1036..1260 +
1691481583.4676056-CDS-H-paniculata_contig8630:1035..12601691481583.4676056-CDS-H-paniculata_contig8630:1035..1260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8630 1036..1260 +
1622931086.1204038-CDS-H-paniculata_contig8630:3060..31621622931086.1204038-CDS-H-paniculata_contig8630:3060..3162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8630 3061..3162 +
1691481583.479668-CDS-H-paniculata_contig8630:3060..31621691481583.479668-CDS-H-paniculata_contig8630:3060..3162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8630 3061..3162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8630.16590.1

>prot_H-paniculata_contig8630.16590.1 ID=prot_H-paniculata_contig8630.16590.1|Name=mRNA_H-paniculata_contig8630.16590.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MNNSCNNNNNNDNNDKASDAGNTNHASVPTETVNALLLGWRLAESTTTAR
GGSRNNGSSGNDGIVTLGGFERYHQDLLVGTSNSDSDDNDCDCFQAIVAS
EWNTTLLQ*
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mRNA from alignment at H-paniculata_contig8630:977..3170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8630.16590.1 ID=mRNA_H-paniculata_contig8630.16590.1|Name=mRNA_H-paniculata_contig8630.16590.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2194bp|location=Sequence derived from alignment at H-paniculata_contig8630:977..3170+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTATCTGTGCGACATGTGGAGGGTGTGTTCAACGCAGAGGCGGCTGCT
CGAGGCATCATGAACAACAGTTGCAACAATAACAACAACAACGACAACAA
CGACAAGGCCTCCGATGCTGGAAATACGAACCACGCTTCCGTTCCGACGG
AAACTGTTAATGCCCTATTGTTAGGGTGGAGGTTGGCGGAATCGACAACA
ACGGCAAGGGGTGGCAGCCGCAACAACGGCAGCAGCGGCAACGACGGCAT
TGTGACACTCGGCGGCTTCGAACGGTATCACCAGGTAAAAAAACGACAGG
AGAAAGAGGGATTTTCTCATTGTCTACTTGGATTTTTAGATTTTTAGATT
TTTAGATTTTTGGATTCGCGGGTTTTGGAGTATGCAAACAACTAGATAGG
ACATGCTCTGGTTTTAGACACTATAGTAACTCTCTTTAAGTTTCCGATTT
GGTTTGATTATTTTTGTTTTGTTTTTGAACGCCGTAGCTGAGTCTGCTAC
ACACTGTCGAAAGAAGGTCATTATAATATTGATTTATATTGTATGTTATT
TAATAGTATGGTATGTACTGGTAGTGTGGTTGCGGCGTGCTGCCCTGTAT
TGGGTGTAACCATGCCCTGACACACTGTAACACATTGGATAGCGCCGCAT
GAAGAGCTGGTGTCTGGCTCGTGTGAGCAGCGTTAATCGACAGCTAATTC
ATTTATTCAGTGTGCATCGCACGCTGGTCATTCGAACAATGATACAAATA
ACCGTAAGTGTACTCACCTTGTCCATGAACGTGTTGACTGTAAACTATGG
CGTAATCTTTTACCGATGGAGAATGACAAGCACCACCATCACCACTATTC
CTCCTAATGAGGCACCGTAAACAAGATGAGACGAATACAAACGTGATGTA
TGACAGCTCTGAATTCTAGTATCAGAAAGTCACAAAAGACTAAAACTAGT
TTGAACAGGCGATACTCGAGATTGGGGATCAATTTTCTTGTTGGAATTAT
AAACTTCCGTTGAATTTGAATGTTTCGAAAATGGTGCTAGCGAAAGGCAC
TACTTTCCGGGGAGAGTTCGTGTCCATCTCACTGCTATTTACTCTATCTG
CAGAATGAATTTGGAAGCCTTTTCATGCCTCTATTCGCACGGAAAGTAGT
GCATTTCACTGCTAGCACCATTTTCGAAACATTCAAATTCAACAGAGCTT
CAATCCCGACAAGAAAGTGGATCCCCAATCCCGAGTATCGGCTGTACTTG
GGAGGTCTGGGAAGACGAACGTTACGTACTGTTCCCATGAAGAACAACAC
GCTCTCATGGTAGAATGGCTTCCGCGGGCGCGCTGCTCCTGCTCTAGTTT
CGGTTTGGGTTTAGAGATGTTGTGTGGAGCCCACGCCGTTTGATCTGTCG
GGAGAGACCTCTCCTAGGTACGAATGACCCTCAGGGGTTGAGCCAGCGAG
AGAGCCGGTCGGGAAATGGGCAACCTTGGTTCGAAAATGTGCGAAAACGC
CTCCAAATTTTGTGTAGGGGATCGGGGTTCACGAATCTCAGGAACGTCAG
AAACGTTCCTGCTCTCTACACTGTGCATAGCATGTAGTAAGTAGGATGGA
TGTGGGGGCACCTTTGGTGGTATAGGAAAGAGCAATTGGTCCTCATCGGG
GATCAATCCGTCTTCTTGTGGGAGTAATGCTCCGTCCTCTCGAGGATGTA
GGTTCAAAGGTCTTAACAGTCATAGCATGCAAAACTTGAGAATCTCCCAC
ATACTTGCAGTAAATATGCCAAACATGTCGCGGTCATTGCTCATTAGGCC
ATGGCCATCATAGGTGGCACCACTTCATGACCGTTGTTTTAGAACCAAAG
AGATGATTGATTCCTATTTAAGAAAATAATGACCTCCGTCGGGAATATGT
GGGTACCTTCTCCCGCCCGTCTGTATCTGTCTCTCGATCTCTCTGTTTCG
ATCTCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCAGGCACA
CACTATTTCGATCTATCGTACGTTTACCTATCTATCTCATCTACTTTCCT
GTCTTTGTTTTCTGCATTCTGGCATCTCTGTCAGGACTTGCTCGTGGGCA
CAAGCAACAGTGATAGCGACGACAACGACTGCGATTGCTTCCAAGCGATC
GTCGCATCGGAATGGAACACGACTCTGTTGCAGTAGAACGAACA
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Coding sequence (CDS) from alignment at H-paniculata_contig8630:977..3170+

>mRNA_H-paniculata_contig8630.16590.1 ID=mRNA_H-paniculata_contig8630.16590.1|Name=mRNA_H-paniculata_contig8630.16590.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig8630:977..3170+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACAACAGTTGCAACAATAACAACAACAACGACAACAACGACAAGGC
CTCCGATGCTGGAAATACGAACCACGCTTCCGTTCCGACGGAAACTGTTA
ATGCCCTATTGTTAGGGTGGAGGTTGGCGGAATCGACAACAACGGCAAGG
GGTGGCAGCCGCAACAACGGCAGCAGCGGCAACGACGGCATTGTGACACT
CGGCGGCTTCGAACGGTATCACCAGATGAACAACAGTTGCAACAATAACA
ACAACAACGACAACAACGACAAGGCCTCCGATGCTGGAAATACGAACCAC
GCTTCCGTTCCGACGGAAACTGTTAATGCCCTATTGTTAGGGTGGAGGTT
GGCGGAATCGACAACAACGGCAAGGGGTGGCAGCCGCAACAACGGCAGCA
GCGGCAACGACGGCATTGTGACACTCGGCGGCTTCGAACGGTATCACCAG
GACTTGCTCGTGGGCACAAGCAACAGTGATAGCGACGACAACGACTGCGA
TTGCTTCCAAGCGATCGTCGCATCGGAATGGAACACGACTCTGTTGCAGT
AGGACTTGCTCGTGGGCACAAGCAACAGTGATAGCGACGACAACGACTGC
GATTGCTTCCAAGCGATCGTCGCATCGGAATGGAACACGACTCTGTTGCA
GTAG
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