mRNA_H-paniculata_contig8626.16588.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8626.16588.1
Unique NamemRNA_H-paniculata_contig8626.16588.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8626.16588.1 vs. uniprot
Match: D8LDU1_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU1_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.960e-37
Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = 1
Query:   13 QFVGGGKELTVPQYFLAGSLTAVPITLVESPVELLKIKLMTQVGEGEYKGVIDCGRKIFAARGVRGVYQGFLSTLTRNIPGFGAYFACFE 282
            + VGGGKELT+PQY+ AGSL A+PI++VE+PV+L KIKL  QVG+GEY GV DCGRKIF + G++G YQGF + L RNIP FGAYF CFE
Sbjct:   94 KIVGGGKELTIPQYYAAGSLAAIPISVVEAPVDLFKIKLQAQVGKGEYDGVFDCGRKIFKSYGIKGAYQGFSAVLLRNIPCFGAYFFCFE 183          
BLAST of mRNA_H-paniculata_contig8626.16588.1 vs. uniprot
Match: A0A835Z5H4_9STRA (Carnitine/acylcarnitine carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5H4_9STRA)

HSP 1 Score: 130 bits (326), Expect = 3.920e-35
Identity = 57/88 (64.77%), Postives = 76/88 (86.36%), Query Frame = 1
Query:   19 VGGGKELTVPQYFLAGSLTAVPITLVESPVELLKIKLMTQVGEGEYKGVIDCGRKIFAARGVRGVYQGFLSTLTRNIPGFGAYFACFE 282
            VGGGKEL++PQY+LAGSL A+PIT+VESPV+  KI+L  QVGEG+YKGV DC ++++A++G+RGVYQG +++L RN+P FGAYF  FE
Sbjct:   96 VGGGKELSIPQYYLAGSLAAIPITIVESPVDFFKIQLQAQVGEGKYKGVADCAKQVYASQGIRGVYQGGVASLMRNVPCFGAYFFSFE 183          
BLAST of mRNA_H-paniculata_contig8626.16588.1 vs. uniprot
Match: A0A2R5GTK5_9STRA (Mitochondrial substrate carrier family protein G n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTK5_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 6.200e-23
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 1
Query:   49 QYFLAGSLTAVPITLVESPVELLKIKLMTQVGEGEYKGVIDCGRKIFAARGVRGVYQGFLSTLTRNIPGFGAYF 270
            +Y+LAG++ A+PIT+VE+PV+LLKIKL  QVGEGEY+GV D  RK+  A GV G+YQG  +TL RN+P FG YF
Sbjct:  107 KYWLAGAIAAIPITIVETPVDLLKIKLQAQVGEGEYEGVFDAARKLSKAHGVGGLYQGVGATLLRNVPCFGLYF 180          
BLAST of mRNA_H-paniculata_contig8626.16588.1 vs. uniprot
Match: A0A137NXK7_CONC2 (Mitochondrial substrate carrier family protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NXK7_CONC2)

HSP 1 Score: 83.2 bits (204), Expect = 5.340e-17
Identity = 38/81 (46.91%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   31 KELTVPQYFLAGSLTAVPITLVESPVELLKIKLMTQVG-EGEYKGVIDCGRKIFAARGVRGVYQGFLSTLTRNIPGFGAYF 270
            ++L++    +AGSLT + ++ V +PVELLKI+   + G    Y G++DCG++I A  GVRG+YQG+L+TLTR IP +  YF
Sbjct:  123 EKLSLLNTSIAGSLTGIVVSFVNTPVELLKIRFQVETGANSRYTGLLDCGKQIVAQSGVRGLYQGYLATLTREIPAYAGYF 203          
BLAST of mRNA_H-paniculata_contig8626.16588.1 vs. uniprot
Match: A0A152A2M1_9MYCE (Mitochondrial substrate carrier family protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A2M1_9MYCE)

HSP 1 Score: 81.6 bits (200), Expect = 1.650e-16
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   31 KELTVPQYFLAGSLTAVPITLVESPVELLKIKLMTQVGEG-EYKGVIDCGRKIFAARGVRGVYQGFLSTLTRNIPGFGAYFACFE 282
            KEL+V    +AGS+    I  VE PV+L K ++  Q G+  +Y G++DC +KI+  RG+RG+YQG   TL R++P  GAYF  +E
Sbjct:  107 KELSVQDLTIAGSMAGFTIAFVEGPVDLFKSQMQVQYGDKKQYNGIMDCAKKIWQTRGIRGIYQGLGPTLIRDVPANGAYFGFYE 191          
BLAST of mRNA_H-paniculata_contig8626.16588.1 vs. uniprot
Match: F4QC21_CAVFA (Mitochondrial substrate carrier family protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QC21_CAVFA)

HSP 1 Score: 79.3 bits (194), Expect = 1.140e-15
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   31 KELTVPQYFLAGSLTAVPITLVESPVELLKIKLMTQVGEGEYKGVIDCGRKIFAARGVRGVYQGFLSTLTRNIPGFGAYFACFE 282
            +EL+V Q   AG++  + I  VESPV+L K +L    G+ ++ G+ D  +KI+ +RG+RGVYQGF STL RN+P    YFA +E
Sbjct:  106 EELSVEQLAKAGAIAGLTIAFVESPVDLFKSQLQVP-GQTQFNGLADVAKKIYQSRGIRGVYQGFSSTLVRNVPANCCYFASYE 188          
BLAST of mRNA_H-paniculata_contig8626.16588.1 vs. uniprot
Match: A0A7S1KTE3_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KTE3_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 9.550e-15
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = 1
Query:   31 KELTVPQYFLAGSLTAVPITLVESPVELLKIKLMTQVGEG--EYKGVIDCGRKIFAARGVRGVYQGFLSTLTRNIPGFGAYFACFE 282
            +EL++ + F AG  +    T++ +P+EL+KI++  Q  +G  +YK  +DC +KIFA RG+RG+Y+G  STL R+ PG G YF  +E
Sbjct:  109 EELSLFKIFNAGVFSGFASTVIMTPMELVKIQMQLQFDDGAKKYKNPLDCAKKIFAERGIRGIYRGTGSTLVRDAPGSGVYFVFYE 194          
BLAST of mRNA_H-paniculata_contig8626.16588.1 vs. uniprot
Match: A0A507E4X4_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E4X4_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 1.140e-14
Identity = 36/87 (41.38%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   31 KELTVPQYFLAGSLTAVPITLVESPVELLKIKLMTQ---VGEGEYKGVIDCGRKIFAARGVRGVYQGFLSTLTRNIPGFGAYFACFE 282
            K+LT+ +Y +AG  +A+P T+V +P+E +K+ L TQ   VG  +Y G++D G  ++   G+R +Y+G ++TL R+IPG  AYF  +E
Sbjct:  104 KDLTLTEYAIAGGFSAIPTTIVTTPMERVKVILQTQDQSVGGKKYTGMVDAGAGMWKEGGIRSLYRGTVATLARDIPGSAAYFWAYE 190          
BLAST of mRNA_H-paniculata_contig8626.16588.1 vs. uniprot
Match: A0A4P9W5A2_9FUNG (Mitochondrial carrier domain-containing protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W5A2_9FUNG)

HSP 1 Score: 74.3 bits (181), Expect = 2.650e-14
Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   31 KELTVPQYFLAGSLTAVPITLVESPVELLKIKLMTQ---VGEGEYKGVIDCGRKIFAARGVRGVYQGFLSTLTRNIPGFGAYFACFE 282
             EL++ +Y LAG  +A+P T+V +P+E +K+ L TQ   VG  +YKG+ D G  +    GV  +Y+G ++TL R++PG  AYF  +E
Sbjct:   19 NELSMLEYALAGGFSAIPTTIVTTPMERVKVVLQTQDQRVGGVKYKGMFDAGGAMLKEGGVASLYRGTIATLARDVPGSAAYFVAYE 105          
BLAST of mRNA_H-paniculata_contig8626.16588.1 vs. uniprot
Match: A0A397UDV6_9GLOM (Mitochondrial carrier domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UDV6_9GLOM)

HSP 1 Score: 75.1 bits (183), Expect = 4.290e-14
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 1
Query:    7 FSQFVGGG---KELTVPQYFLAGSLTAVPITLVESPVELLKIKLMTQVGEGEYKGVIDCGRKIFAARGVRGVYQGFLSTLTRNIPGFGAYFACFE 282
            F + + GG   + L++ +  +AG+LT   +    +PVELLK++L TQ     YKGV D   KI+A RG+ G+Y G   T+ R+IP F  YF  +E
Sbjct:   89 FRRLIRGGDTTRPLSLRETGMAGALTGSVMAFFNTPVELLKVQLQTQKNNPAYKGVFDAAAKIYAHRGISGLYHGLPITIMRDIPSFATYFFVYE 183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8626.16588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDU1_ECTSI3.960e-3767.78Carnitine/acylcarnitine carrier protein n=1 Tax=Ec... [more]
A0A835Z5H4_9STRA3.920e-3564.77Carnitine/acylcarnitine carrier protein n=1 Tax=Tr... [more]
A0A2R5GTK5_9STRA6.200e-2362.16Mitochondrial substrate carrier family protein G n... [more]
A0A137NXK7_CONC25.340e-1746.91Mitochondrial substrate carrier family protein n=1... [more]
A0A152A2M1_9MYCE1.650e-1644.71Mitochondrial substrate carrier family protein n=1... [more]
F4QC21_CAVFA1.140e-1546.43Mitochondrial substrate carrier family protein n=1... [more]
A0A7S1KTE3_9EUKA9.550e-1543.02Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]
A0A507E4X4_9FUNG1.140e-1441.38Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A4P9W5A2_9FUNG2.650e-1441.38Mitochondrial carrier domain-containing protein (F... [more]
A0A397UDV6_9GLOM4.290e-1440.00Mitochondrial carrier domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8626contigH-paniculata_contig8626:8382..9617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue2.7e-29
Seed eggNOG ortholog2880.D8LDU1
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085
EggNOG free text desc.mitochondrial transport
EggNOG OGsKOG0758@1,KOG0758@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons2
Model size283
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931085.6865473-CDS-H-paniculata_contig8626:8381..85191622931085.6865473-CDS-H-paniculata_contig8626:8381..8519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8626 8382..8519 +
1691481583.275632-CDS-H-paniculata_contig8626:8381..85191691481583.275632-CDS-H-paniculata_contig8626:8381..8519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8626 8382..8519 +
1622931085.7032955-CDS-H-paniculata_contig8626:9473..96171622931085.7032955-CDS-H-paniculata_contig8626:9473..9617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8626 9474..9617 +
1691481583.2869868-CDS-H-paniculata_contig8626:9473..96171691481583.2869868-CDS-H-paniculata_contig8626:9473..9617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8626 9474..9617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8626.16588.1prot_H-paniculata_contig8626.16588.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8626 8382..9617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8626.16588.1

>prot_H-paniculata_contig8626.16588.1 ID=prot_H-paniculata_contig8626.16588.1|Name=mRNA_H-paniculata_contig8626.16588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
MIFSQFVGGGKELTVPQYFLAGSLTAVPITLVESPVELLKIKLMTQVGEG
EYKGVIDCGRKIFAARGVRGVYQGFLSTLTRNIPGFGAYFACFE
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mRNA from alignment at H-paniculata_contig8626:8382..9617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8626.16588.1 ID=mRNA_H-paniculata_contig8626.16588.1|Name=mRNA_H-paniculata_contig8626.16588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig8626:8382..9617+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTTTTTCTCAGTTTGTTGGTGGCGGGAAAGAACTGACGGTGCCGCA ATATTTCTTGGCGGGGAGTCTAACGGCGGTGCCCATCACTCTCGTTGAAA GCCCGGTCGAACTACTGAAGATAAAACTCATGACTCAGGTACCACACGAG GGGGAAAAGGGCACAATCATTTCTCTATCTCTCTTTTTTTTTCCGTTTTT TTGTTTTTTCTTTGCCAATACAACTGAATAAATAGATTAAAAAATAAGAT GTGGTGGGTACAAAGACAAAACATCGACCGACCAACCCACCGACCGATGG ACCGACCGACCGGCCGACCGGCCGGCCGGCCCGATCCTTTTCGTTGTAAA ATTAGCTGTGGTAGGTAGACAAGAGACCGATTAGCCCTTTGGTTCTTGTT GTCCATGTGCTCTCGCGAGTTACGTTTCTGGAGGGATCTGGCATGAACGA TTTTTCGTTGCTTGGACATCAGAACACCGCCGATAGCGAATCTTCCTCTA CCGATCGTTACTCTCCTCTACCTTTATTCGAGTTCAATCTGACGGTTACT CTCCTTTTTTTGGTTTCAATCGCAGGTTGCGGATATAGTACTTTAGGTGG CTACAGTTGGCGGGCCGATTGTATTCAATGTACATCGAGGCGACTGCTTT CACCCGCAGGGTAATTTTACTACAATAACGAGAATTTTGGTTAGCAACAT TGAGGGTTGTTTTTGATTATCGTGATGTCACTTGTTATTGTCATATGAGG ACTATTTCATGCTTCACCTACGGTACACATGCGAGTGATGCATGGATACT CCCTTGTAGAGGTTGCTGTATTCTATGTCGTGCGTGTTTCAAGAGGTGCG AGAAATTTCGTTACTTGGTCATGATTGGGTCAGAAGTTTGGTCATGTGAA CAGCCGTGTTCCTCTGCTGCGGAGGTTTTTTCGTGAAGACATCTTTTCGA GTGTACCTGTTATTGACAAGGATTTATCAAGGGTAGAATAATACGTTAAT CAACATGTAACATTGGCCTGTACCCCCCCCCCCCCCCCCCCCCGCCCGCC CACTCGCCCACCTAAACTGCATATATGGAACATGACGCGCAGGTGGGAGA AGGGGAATACAAAGGAGTCATCGACTGCGGCCGGAAGATTTTCGCGGCAC GCGGCGTTAGGGGCGTGTACCAGGGCTTCTTGTCAACTTTGACCCGGAAT ATCCCGGGTTTTGGTGCTTACTTTGCGTGTTTTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8626:8382..9617+

>mRNA_H-paniculata_contig8626.16588.1 ID=mRNA_H-paniculata_contig8626.16588.1|Name=mRNA_H-paniculata_contig8626.16588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig8626:8382..9617+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTTTTTCTCAGTTTGTTGGTGGCGGGAAAGAACTGACGGTGCCGCA
ATATTTCTTGGCGGGGAGTCTAACGGCGGTGCCCATCACTCTCGTTGAAA
GCCCGGTCGAACTACTGAAGATAAAACTCATGACTCAGATGATTTTTTCT
CAGTTTGTTGGTGGCGGGAAAGAACTGACGGTGCCGCAATATTTCTTGGC
GGGGAGTCTAACGGCGGTGCCCATCACTCTCGTTGAAAGCCCGGTCGAAC
TACTGAAGATAAAACTCATGACTCAGGTGGGAGAAGGGGAATACAAAGGA
GTCATCGACTGCGGCCGGAAGATTTTCGCGGCACGCGGCGTTAGGGGCGT
GTACCAGGGCTTCTTGTCAACTTTGACCCGGAATATCCCGGGTTTTGGTG
CTTACTTTGCGTGTTTTGAGGTGGGAGAAGGGGAATACAAAGGAGTCATC
GACTGCGGCCGGAAGATTTTCGCGGCACGCGGCGTTAGGGGCGTGTACCA
GGGCTTCTTGTCAACTTTGACCCGGAATATCCCGGGTTTTGGTGCTTACT
TTGCGTGTTTTGAG
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