mRNA_H-paniculata_contig8624.16585.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8624.16585.1
Unique NamemRNA_H-paniculata_contig8624.16585.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8624.16585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8624contigH-paniculata_contig8624:3373..6724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_001940.1
Exons2
Model size2823
Cds size1434
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8624.16585.1prot_H-paniculata_contig8624.16585.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8624 4617..6050 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931085.3804271-UTR-H-paniculata_contig8624:3372..46161622931085.3804271-UTR-H-paniculata_contig8624:3372..4616Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8624 3373..4616 -
1691481583.1452775-UTR-H-paniculata_contig8624:3372..46161691481583.1452775-UTR-H-paniculata_contig8624:3372..4616Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8624 3373..4616 -
1622931085.4054298-UTR-H-paniculata_contig8624:6050..60921622931085.4054298-UTR-H-paniculata_contig8624:6050..6092Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8624 6051..6092 -
1691481583.1692965-UTR-H-paniculata_contig8624:6050..60921691481583.1692965-UTR-H-paniculata_contig8624:6050..6092Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8624 6051..6092 -
1622931085.4260995-UTR-H-paniculata_contig8624:6621..67241622931085.4260995-UTR-H-paniculata_contig8624:6621..6724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8624 6622..6724 -
1691481583.1794384-UTR-H-paniculata_contig8624:6621..67241691481583.1794384-UTR-H-paniculata_contig8624:6621..6724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8624 6622..6724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931085.392056-CDS-H-paniculata_contig8624:4616..60501622931085.392056-CDS-H-paniculata_contig8624:4616..6050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8624 4617..6050 -
1691481583.1560273-CDS-H-paniculata_contig8624:4616..60501691481583.1560273-CDS-H-paniculata_contig8624:4616..6050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8624 4617..6050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8624.16585.1

>prot_H-paniculata_contig8624.16585.1 ID=prot_H-paniculata_contig8624.16585.1|Name=mRNA_H-paniculata_contig8624.16585.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=478bp
MTMKRAVSSIDASAAAAASQRSAAAAAAGHHHPNGLGDGPKLKRCKSACI
NLKRLAATTMTSTSPTSATGPTAQPMDDVNSSSPFWRRWHQHSSSPAFAA
TSWGATSSMQQSIALVNGRKASSGKAGSSSSSNNTNSSSSSSGLLEISEV
RSRDTRRVGGLGAEGGWVGSCVAPSTPPLTGRNLSFGAALNSFDPVPEET
TSLTSTTAGVVLPSSWSESIAPHNTTVSGKCSEVDSEVYKHECKSRQSTR
RAQQHLQHRQHEVEVGSNIRSDDGDSHNEHTLARSATIDLSAAESYAPGD
FSIEAFGEIDVDIDVDLDEGEDEPAGSVQDTGVEQQQQPWPLFGQVWAGA
EADSAGRDCRHVLPARRSGVGVVATRSSFGKSGRAAAAAAAAVAVPASSA
TAGDAKMGGRGVLSVRLASAGDVDIDGGVGCVQAVSATAVATRMDNNNDN
RELQSAMLMMRLQRRFEDMMLVSRVAT*
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mRNA from alignment at H-paniculata_contig8624:3373..6724-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8624.16585.1 ID=mRNA_H-paniculata_contig8624.16585.1|Name=mRNA_H-paniculata_contig8624.16585.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3352bp|location=Sequence derived from alignment at H-paniculata_contig8624:3373..6724- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAAAGCTCCGACGTCTTAGATGAGCTTCACATAAACAACAATACTCTT
CCCAACATTGCAAGAGATAGAGCAATTCACACCGCCATACACTCCGAGAA
AAGGTGAGAGATTGAAGAGCGAGAGAGACAGAGACAAAGCAGCTGTCAGC
GTTGCTCAAAATTATTGGCTCGGGTACTGTGGATGATTAAGTTCACTGTC
AGTTGACTGAGGTTTTTCTACGTTGAAGCTTGTGTTCCACCCGTTGTTAG
ACATCCTTGCAAAGCTCCACCTGAAACAGTCTTGTTCGGAGACTTTTACC
AGCTGCAGAATAGGGAACCCTCGCTTAGCCCCGAGGCTACCATTACAGCG
CCCGCCCCCCTCGCCCCCGTCTCCATCTGCCGCTGGATCTCTCATTTCGC
GCCTCATTTCCCCCATTTAACTTTGCATCTATCTTATTTTTCCGCATAGC
ACACCAGCACAACGTACGCCGCGTGTCTCTTGTCGAAGGTGGTTGAATTT
TGAACTACACTATAAAACACAACGTCACTGCCCACCTTGATTTTTATACC
GCCCAAAACCCTCTTGGCACCATTCGTCTTCATTCCCCCCCACTCTGCCG
CCGCTCTCACCATCACCAACCCACGATACCAGACGAATCCACGGGTCTCA
TCCTGAGAAACATTAGATCCCTCGATGACGATGAAGCGGGCGGTTTCTTC
CATTGACGCCTCGGCTGCTGCAGCGGCGTCTCAGAGATCCGCCGCAGCAG
CAGCCGCAGGCCATCACCATCCAAACGGCTTGGGTGATGGCCCAAAATTA
AAGCGTTGCAAGTCTGCGTGCATCAACTTAAAAAGACTGGCGGCGACAAC
GATGACTTCAACGAGCCCCACCTCAGCCACCGGCCCCACTGCGCAACCGA
TGGATGACGTCAACTCCTCCTCCCCTTTCTGGCGCCGGTGGCACCAGCAC
TCGAGCTCGCCCGCGTTCGCGGCAACGTCGTGGGGAGCGACCAGTTCAAT
GCAACAATCAATCGCTCTGGTGAACGGACGCAAGGCGTCTTCAGGCAAAG
CTGGCAGCAGCAGCAGCAGCAACAATACCAACAGCAGCAGTAGCAGCAGC
GGATTACTGGAAATTAGCGAAGTCCGCAGTCGAGATACGAGAAGGGTGGG
CGGGCTTGGAGCGGAGGGCGGCTGGGTGGGGAGCTGCGTGGCCCCGAGCA
CGCCGCCGCTGACGGGCCGTAACTTGTCGTTCGGTGCCGCGCTGAACAGC
TTCGACCCTGTGCCGGAAGAGACAACATCCTTAACCTCAACCACAGCTGG
GGTGGTTTTACCTTCCTCGTGGTCGGAATCCATAGCTCCTCATAACACAA
CCGTGTCCGGAAAATGCAGCGAGGTGGACTCAGAGGTGTACAAGCACGAG
TGCAAGTCGCGGCAGAGTACGAGGAGAGCACAGCAGCACCTGCAACATCG
TCAACATGAAGTCGAGGTTGGCAGCAACATCAGAAGTGATGACGGCGACA
GCCACAACGAGCACACCCTCGCCAGGTCTGCTACCATAGACCTGTCGGCG
GCCGAATCCTACGCTCCAGGCGACTTCAGCATTGAGGCGTTCGGGGAGAT
CGACGTCGATATTGACGTTGACCTGGACGAGGGTGAGGACGAGCCTGCTG
GATCGGTACAAGACACAGGGGTCGAGCAACAGCAGCAGCCGTGGCCATTG
TTTGGGCAGGTGTGGGCGGGGGCAGAAGCAGACTCCGCCGGGAGGGATTG
CAGGCATGTGCTCCCGGCACGCAGGTCCGGTGTTGGAGTTGTTGCAACAC
GTAGTTCTTTCGGAAAATCTGGGCGAGCTGCCGCTGCTGCTGCTGCTGCT
GTTGCTGTGCCCGCTTCTTCAGCGACGGCAGGGGATGCAAAAATGGGCGG
GCGTGGAGTGCTGTCCGTGCGTCTAGCATCCGCAGGGGACGTTGATATTG
ATGGCGGGGTGGGGTGTGTGCAGGCAGTGTCCGCCACTGCCGTGGCGACG
AGGATGGATAATAACAACGACAACCGTGAGCTGCAATCTGCCATGCTGAT
GATGCGGCTCCAGAGGAGGTTTGAGGACATGATGCTCGTGTCGCGCGTGG
CCACTTGAATTGACGGTGCGTCCTGGTTTGGGGGCAGTTGTCACGATAAC
ACACCGAAACATGGATGTACGTACGCTGAGTTGCATATTTATGAATGATC
ATGGTATTGGCGGTAGTGGCGTCCTTTTTTTATTCAAGTTGAGAGAGCGA
GAACAAAGAAAAAAAACGGGCCCAAGTAGACCATGGATCAGGAGCGCGGG
GAGGTGTGCGATATTGTGAGCGTTACGATGTGTTCTATTTGCTGTCGTGA
AAAGAGTGGGCACAAGAGAAGCGTTTTGCTTGGCTTGCAAGTCCCTCTCT
AAATTTCGCCCAACACCTGGGCTGGCCGTGATCAACTGAATGGCTTGCTT
TGCTGTTTTCTGTGGTTTGCGCGGCACGAAGGAAGGCCATGTATATCGTT
GGATTTTTCTAACCTATTCCTCTCTTTTTTCTATTCAAGTAATTCTAATA
TGCGTGGGTAGATGAATGGGCACATGCACGATAGTTTATACTTCCAAGTT
TGTGGTTTGCAGGGAGGGCGAGGTAATACGGCAGTATATCGTACAGTGGT
CTTCTTGCAAGGCCTGTTATCGCTGTCCGTGCCCCTTTTCTCGGAATCGG
CTCCAAAGATAGAAGAGGCTGTTTACCACTACAATGCGGGGCTTTCTGAA
AAGACGAACCAGTTTACAGGCTTGCCTCATCCAGGTAGTAGTTATCGCCG
GACATTGTAGAGAAAGGGGCGTGCTTTGCTTCTCACCTTTCATCTTTATT
TTATTTTTTTCGAAAATAGATTGAGAACAAAAAAACTATTCCTGGAGAGG
GTCATGTATTTTTGGTGCGCTGGGGTGGGCAGGGCGCCGGATCGCAAGAA
GTGTTATTAGGTATGTAAGGCACTACATGCACAATAGAGATGTCGTTTGT
TGTGTTTGAGATCAGTCGAAAAAATGTTTGAAAGAATCGATAGAGAGAGC
TGGGACGGGAATGGGGTACAGCCTAACGTCCACAAGTCTTTTTGAGCTTG
TGACTTTCCCCCGTAATTTCTCGTCTTTGCTTGAGGAGTAGGTTGAAACG
ACTGTAGATCAAGAGATGGATGGATTCTGCCAATGATTTTCATTTGTTGT
TAGTCGTTTTTCGCGTTGGTTGTCGTTTTTCTTTTTTCTTGTTACTTTAC
GGTATTCTTGTGGTGTGTTTCGTAAAGCGATATGTTTTTTCGTTGTGGTG
GTGATGTGTTCTCTTTGTTGATCTATTTACTGTACATCTCCCCGCTGATT
TA
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Coding sequence (CDS) from alignment at H-paniculata_contig8624:3373..6724-

>mRNA_H-paniculata_contig8624.16585.1 ID=mRNA_H-paniculata_contig8624.16585.1|Name=mRNA_H-paniculata_contig8624.16585.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2868bp|location=Sequence derived from alignment at H-paniculata_contig8624:3373..6724- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGATGAAGCGGGCGGTTTCTTCCATTGACGCCTCGGCTGCTGCAGC
GGCGTCTCAGAGATCCGCCGCAGCAGCAGCCGCAGGCCATCACCATCCAA
ACGGCTTGGGTGATGGCCCAAAATTAAAGCGTTGCAAGTCTGCGTGCATC
AACTTAAAAAGACTGGCGGCGACAACGATGACTTCAACGAGCCCCACCTC
AGCCACCGGCCCCACTGCGCAACCGATGGATGACGTCAACTCCTCCTCCC
CTTTCTGGCGCCGGTGGCACCAGCACTCGAGCTCGCCCGCGTTCGCGGCA
ACGTCGTGGGGAGCGACCAGTTCAATGCAACAATCAATCGCTCTGGTGAA
CGGACGCAAGGCGTCTTCAGGCAAAGCTGGCAGCAGCAGCAGCAGCAACA
ATACCAACAGCAGCAGTAGCAGCAGCGGATTACTGGAAATTAGCGAAGTC
CGCAGTCGAGATACGAGAAGGGTGGGCGGGCTTGGAGCGGAGGGCGGCTG
GGTGGGGAGCTGCGTGGCCCCGAGCACGCCGCCGCTGACGGGCCGTAACT
TGTCGTTCGGTGCCGCGCTGAACAGCTTCGACCCTGTGCCGGAAGAGACA
ACATCCTTAACCTCAACCACAGCTGGGGTGGTTTTACCTTCCTCGTGGTC
GGAATCCATAGCTCCTCATAACACAACCGTGTCCGGAAAATGCAGCGAGG
TGGACTCAGAGGTGTACAAGCACGAGTGCAAGTCGCGGCAGAGTACGAGG
AGAGCACAGCAGCACCTGCAACATCGTCAACATGAAGTCGAGGTTGGCAG
CAACATCAGAAGTGATGACGGCGACAGCCACAACGAGCACACCCTCGCCA
GGTCTGCTACCATAGACCTGTCGGCGGCCGAATCCTACGCTCCAGGCGAC
TTCAGCATTGAGGCGTTCGGGGAGATCGACGTCGATATTGACGTTGACCT
GGACGAGGGTGAGGACGAGCCTGCTGGATCGGTACAAGACACAGGGGTCG
AGCAACAGCAGCAGCCGTGGCCATTGTTTGGGCAGGTGTGGGCGGGGGCA
GAAGCAGACTCCGCCGGGAGGGATTGCAGGCATGTGCTCCCGGCACGCAG
GTCCGGTGTTGGAGTTGTTGCAACACGTAGTTCTTTCGGAAAATCTGGGC
GAGCTGCCGCTGCTGCTGCTGCTGCTGTTGCTGTGCCCGCTTCTTCAGCG
ACGGCAGGGGATGCAAAAATGGGCGGGCGTGGAGTGCTGTCCGTGCGTCT
AGCATCCGCAGGGGACGTTGATATTGATGGCGGGGTGGGGTGTGTGCAGG
CAGTGTCCGCCACTGCCGTGGCGACGAGGATGGATAATAACAACGACAAC
CGTGAGCTGCAATCTGCCATGCTGATGATGCGGCTCCAGAGGAGGTTTGA
GGACATGATGCTCGTGTCGCGCGTGGCCACTTGAATGACGATGAAGCGGG
CGGTTTCTTCCATTGACGCCTCGGCTGCTGCAGCGGCGTCTCAGAGATCC
GCCGCAGCAGCAGCCGCAGGCCATCACCATCCAAACGGCTTGGGTGATGG
CCCAAAATTAAAGCGTTGCAAGTCTGCGTGCATCAACTTAAAAAGACTGG
CGGCGACAACGATGACTTCAACGAGCCCCACCTCAGCCACCGGCCCCACT
GCGCAACCGATGGATGACGTCAACTCCTCCTCCCCTTTCTGGCGCCGGTG
GCACCAGCACTCGAGCTCGCCCGCGTTCGCGGCAACGTCGTGGGGAGCGA
CCAGTTCAATGCAACAATCAATCGCTCTGGTGAACGGACGCAAGGCGTCT
TCAGGCAAAGCTGGCAGCAGCAGCAGCAGCAACAATACCAACAGCAGCAG
TAGCAGCAGCGGATTACTGGAAATTAGCGAAGTCCGCAGTCGAGATACGA
GAAGGGTGGGCGGGCTTGGAGCGGAGGGCGGCTGGGTGGGGAGCTGCGTG
GCCCCGAGCACGCCGCCGCTGACGGGCCGTAACTTGTCGTTCGGTGCCGC
GCTGAACAGCTTCGACCCTGTGCCGGAAGAGACAACATCCTTAACCTCAA
CCACAGCTGGGGTGGTTTTACCTTCCTCGTGGTCGGAATCCATAGCTCCT
CATAACACAACCGTGTCCGGAAAATGCAGCGAGGTGGACTCAGAGGTGTA
CAAGCACGAGTGCAAGTCGCGGCAGAGTACGAGGAGAGCACAGCAGCACC
TGCAACATCGTCAACATGAAGTCGAGGTTGGCAGCAACATCAGAAGTGAT
GACGGCGACAGCCACAACGAGCACACCCTCGCCAGGTCTGCTACCATAGA
CCTGTCGGCGGCCGAATCCTACGCTCCAGGCGACTTCAGCATTGAGGCGT
TCGGGGAGATCGACGTCGATATTGACGTTGACCTGGACGAGGGTGAGGAC
GAGCCTGCTGGATCGGTACAAGACACAGGGGTCGAGCAACAGCAGCAGCC
GTGGCCATTGTTTGGGCAGGTGTGGGCGGGGGCAGAAGCAGACTCCGCCG
GGAGGGATTGCAGGCATGTGCTCCCGGCACGCAGGTCCGGTGTTGGAGTT
GTTGCAACACGTAGTTCTTTCGGAAAATCTGGGCGAGCTGCCGCTGCTGC
TGCTGCTGCTGTTGCTGTGCCCGCTTCTTCAGCGACGGCAGGGGATGCAA
AAATGGGCGGGCGTGGAGTGCTGTCCGTGCGTCTAGCATCCGCAGGGGAC
GTTGATATTGATGGCGGGGTGGGGTGTGTGCAGGCAGTGTCCGCCACTGC
CGTGGCGACGAGGATGGATAATAACAACGACAACCGTGAGCTGCAATCTG
CCATGCTGATGATGCGGCTCCAGAGGAGGTTTGAGGACATGATGCTCGTG
TCGCGCGTGGCCACTTGA
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