mRNA_H-paniculata_contig8623.16584.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8623.16584.1
Unique NamemRNA_H-paniculata_contig8623.16584.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8623.16584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8623contigH-paniculata_contig8623:6722..7294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_004850.2
Exons1
Model size573
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8623.16584.1prot_H-paniculata_contig8623.16584.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8623 6760..7281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931085.1885695-UTR-H-paniculata_contig8623:6721..67591622931085.1885695-UTR-H-paniculata_contig8623:6721..6759Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8623 6722..6759 +
1691481583.032097-UTR-H-paniculata_contig8623:6721..67591691481583.032097-UTR-H-paniculata_contig8623:6721..6759Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8623 6722..6759 +
1622931085.215315-UTR-H-paniculata_contig8623:7281..72941622931085.215315-UTR-H-paniculata_contig8623:7281..7294Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8623 7282..7294 +
1691481583.0505452-UTR-H-paniculata_contig8623:7281..72941691481583.0505452-UTR-H-paniculata_contig8623:7281..7294Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8623 7282..7294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931085.2012124-CDS-H-paniculata_contig8623:6759..72811622931085.2012124-CDS-H-paniculata_contig8623:6759..7281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8623 6760..7281 +
1691481583.0419998-CDS-H-paniculata_contig8623:6759..72811691481583.0419998-CDS-H-paniculata_contig8623:6759..7281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8623 6760..7281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8623.16584.1

>prot_H-paniculata_contig8623.16584.1 ID=prot_H-paniculata_contig8623.16584.1|Name=mRNA_H-paniculata_contig8623.16584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MKTQVQAHCRVFDALADSQRGGHDVIIRALDIFEAAATAFKSVTSQQAST
EDHHNSSVLPTIAQGQLGLSMGSPDAGGGNDEGRRAYLRAEKGLALAREQ
LVKNAETLALMAQELEGAKRCICKCGLAIVEKPFCRQFVCSRASSSQVKQ
VHPALRGFAPDFPHQRLTFTYHT*
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mRNA from alignment at H-paniculata_contig8623:6722..7294+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8623.16584.1 ID=mRNA_H-paniculata_contig8623.16584.1|Name=mRNA_H-paniculata_contig8623.16584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=573bp|location=Sequence derived from alignment at H-paniculata_contig8623:6722..7294+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCTGACTGCCTGTCTCTCTGTACCCGATAATGCACAATGAAAACTCAG
GTTCAGGCACATTGCCGTGTATTTGATGCATTAGCAGACTCTCAAAGAGG
TGGACATGATGTCATTATTCGTGCTCTGGACATATTCGAAGCTGCAGCAA
CGGCGTTCAAATCTGTTACGAGTCAGCAAGCCTCGACTGAAGACCATCAC
AACAGTAGCGTCTTGCCTACCATAGCGCAAGGGCAGCTTGGGTTATCGAT
GGGTAGCCCCGATGCCGGTGGCGGCAATGATGAGGGTCGACGGGCATACT
TGCGGGCGGAGAAAGGGTTGGCGCTGGCAAGGGAGCAACTTGTAAAAAAC
GCGGAGACTCTCGCACTCATGGCGCAGGAGCTCGAGGGGGCCAAACGATG
CATATGTAAGTGCGGGTTGGCTATTGTTGAGAAGCCCTTCTGTAGGCAGT
TTGTCTGTTCGCGCGCATCGTCTAGTCAAGTCAAGCAAGTCCATCCTGCT
TTACGTGGTTTCGCCCCCGATTTCCCTCATCAGCGTCTTACCTTCACCTA
CCATACGTAGTGGTACTGATCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8623:6722..7294+

>mRNA_H-paniculata_contig8623.16584.1 ID=mRNA_H-paniculata_contig8623.16584.1|Name=mRNA_H-paniculata_contig8623.16584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig8623:6722..7294+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAACTCAGGTTCAGGCACATTGCCGTGTATTTGATGCATTAGCAGA
CTCTCAAAGAGGTGGACATGATGTCATTATTCGTGCTCTGGACATATTCG
AAGCTGCAGCAACGGCGTTCAAATCTGTTACGAGTCAGCAAGCCTCGACT
GAAGACCATCACAACAGTAGCGTCTTGCCTACCATAGCGCAAGGGCAGCT
TGGGTTATCGATGGGTAGCCCCGATGCCGGTGGCGGCAATGATGAGGGTC
GACGGGCATACTTGCGGGCGGAGAAAGGGTTGGCGCTGGCAAGGGAGCAA
CTTGTAAAAAACGCGGAGACTCTCGCACTCATGGCGCAGGAGCTCGAGGG
GGCCAAACGATGCATATGTAAGTGCGGGTTGGCTATTGTTGAGAAGCCCT
TCTGTAGGCAGTTTGTCTGTTCGCGCGCATCGTCTAGTCAAGTCAAGCAA
GTCCATCCTGCTTTACGTGGTTTCGCCCCCGATTTCCCTCATCAGCGTCT
TACCTTCACCTACCATACGTAGATGAAAACTCAGGTTCAGGCACATTGCC
GTGTATTTGATGCATTAGCAGACTCTCAAAGAGGTGGACATGATGTCATT
ATTCGTGCTCTGGACATATTCGAAGCTGCAGCAACGGCGTTCAAATCTGT
TACGAGTCAGCAAGCCTCGACTGAAGACCATCACAACAGTAGCGTCTTGC
CTACCATAGCGCAAGGGCAGCTTGGGTTATCGATGGGTAGCCCCGATGCC
GGTGGCGGCAATGATGAGGGTCGACGGGCATACTTGCGGGCGGAGAAAGG
GTTGGCGCTGGCAAGGGAGCAACTTGTAAAAAACGCGGAGACTCTCGCAC
TCATGGCGCAGGAGCTCGAGGGGGCCAAACGATGCATATGTAAGTGCGGG
TTGGCTATTGTTGAGAAGCCCTTCTGTAGGCAGTTTGTCTGTTCGCGCGC
ATCGTCTAGTCAAGTCAAGCAAGTCCATCCTGCTTTACGTGGTTTCGCCC
CCGATTTCCCTCATCAGCGTCTTACCTTCACCTACCATACGTAG
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