mRNA_H-paniculata_contig861.16571.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig861.16571.1
Unique NamemRNA_H-paniculata_contig861.16571.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig861.16571.1 vs. uniprot
Match: D7FTI7_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI7_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 6.670e-36
Identity = 70/111 (63.06%), Postives = 74/111 (66.67%), Query Frame = 1 
Query:    1 MSRRSVQVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPNSALVFDLELITFN 225
            M+RR+V VEIFAAGDGINYPQK                                    VVPGLD+GVSQLSIGERAKVTIPAASAYGARGFPGLVPP+SALVFDLELITFN
Sbjct:    1 MARRAVSVEIFAAGDGINYPQKGQTVTVHYTGYLEDGTQFDSSRNRGKPFKFKLGSEQVVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 111
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BLAST of mRNA_H-paniculata_contig861.16571.1 vs. uniprot
Match: A0A7S2C1G0_9STRA (Peptidylprolyl isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1G0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.760e-29
Identity = 61/111 (54.95%), Postives = 67/111 (60.36%), Query Frame = 1 
Query:    1 MSRRSVQVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPNSALVFDLELITFN 225
            M R  V VEIFAAGDGINYP+K                                    V+ GLD+GVSQLSIGERAK++IPAA AYG RGFPGLVPP+S LVFDLELITFN
Sbjct:    1 MPRHDVAVEIFAAGDGINYPRKGQTVTVHYTGYLPDGDTFDSSRDRGKPFKFKLGAEQVILGLDQGVSQLSIGERAKISIPAALAYGERGFPGLVPPDSELVFDLELITFN 111
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BLAST of mRNA_H-paniculata_contig861.16571.1 vs. uniprot
Match: A0A6U1QP22_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QP22_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.180e-27
Identity = 58/106 (54.72%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:   16 VQVEIFAAGDGINYPQ------------------------------------KVVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPNSALVFDLELITFN 225
            V+VEIFAAGDGINYPQ                                    +V+ GLDEGVSQLSIGERAK+TIP+   YG RGFPGLVPPNS LVFDLELITF 
Sbjct:    8 VKVEIFAAGDGINYPQPGKTVTVHYTGFLPDGTQFDSSRDRGKPFKFKLGAEQVISGLDEGVSQLSIGERAKITIPSQKGYGERGFPGLVPPNSQLVFDLELITFT 113
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BLAST of mRNA_H-paniculata_contig861.16571.1 vs. uniprot
Match: F0YHE6_AURAN (Peptidylprolyl isomerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHE6_AURAN)

HSP 1 Score: 103 bits (257), Expect = 4.660e-27
Identity = 55/109 (50.46%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:    7 RRSVQVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPNSALVFDLELITFN 225
            ++ + VEIFAAGDG+NYP+K                                    V+PGLD GVSQLSIGERAK+ IP   AYG RGFPGL+P NSAL+FDLELITFN
Sbjct:    4 KKDIAVEIFAAGDGVNYPRKGQTVTVHYSGYLPSGDMFDSSRDRGKPFKFKLGGEQVIPGLDAGVSQLSIGERAKIVIPPDMAYGDRGFPGLIPRNSALIFDLELITFN 112
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BLAST of mRNA_H-paniculata_contig861.16571.1 vs. uniprot
Match: A0A8J2T2V8_9STRA (Peptidylprolyl isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2V8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.570e-26
Identity = 54/106 (50.94%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:   16 VQVEIFAAGDGINYP------------------------------------QKVVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPNSALVFDLELITFN 225
            + VEIFAAGDG+NYP                                    ++V+PGLD GVSQLSIGERAK++IP+  AYG RGFPGL+P NSALVFDLELITF+
Sbjct:    8 IAVEIFAAGDGVNYPRQGQTVTVHYSGYLPNGEIFDSSRDRGKPFKFKLGGEQVIPGLDAGVSQLSIGERAKISIPSDMAYGERGFPGLIPRNSALVFDLELITFS 113
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BLAST of mRNA_H-paniculata_contig861.16571.1 vs. uniprot
Match: A0A485LR83_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LR83_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.070e-23
Identity = 50/106 (47.17%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:   16 VQVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPNSALVFDLELITFN 225
            VQVE+F AGDG+NYP+K                                    V+PGLDEG+ QL + ERAK+ IPA  AYG +GFPGLVPPN+ LVFD+ELITF 
Sbjct:   21 VQVEVFVAGDGVNYPKKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIEQLCMKERAKIYIPADKAYGKKGFPGLVPPNTNLVFDIELITFK 126
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BLAST of mRNA_H-paniculata_contig861.16571.1 vs. uniprot
Match: A0A836CL56_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL56_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.860e-23
Identity = 42/55 (76.36%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:   61 QKVVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPNSALVFDLELITFN 225
            ++VVPGLDEG +QLSIGERAK+T+P + AYGA+GFPGLVPPNS LVFD+ELITF+
Sbjct:   54 EQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITFS 108
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BLAST of mRNA_H-paniculata_contig861.16571.1 vs. uniprot
Match: K3WSB6_GLOUD (Peptidylprolyl isomerase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB6_GLOUD)

HSP 1 Score: 94.7 bits (234), Expect = 1.880e-23
Identity = 50/106 (47.17%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:   16 VQVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPNSALVFDLELITFN 225
            +QVE+F AGDGINYP+K                                    V+PGLDEGV +L + ERAK+ IPA  AYG +GFPGLVPPNS L+FDLEL+TF 
Sbjct:   16 IQVEVFIAGDGINYPKKGQTVVVHYTGYLQDGRKFDSSRDREKPFKFKLGAEQVIPGLDEGVERLCMKERAKIFIPADKAYGRKGFPGLVPPNSNLIFDLELLTFR 121
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BLAST of mRNA_H-paniculata_contig861.16571.1 vs. uniprot
Match: A0A024TRW9_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TRW9_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 3.060e-23
Identity = 49/106 (46.23%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:   16 VQVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPNSALVFDLELITFN 225
            +QVE+F AGDGINYPQK                                    V+PGLDEG+ +L + ERAK+ IP+  AYG +GFPGLVPPN+ LVFD+ELITF 
Sbjct:   21 IQVEVFVAGDGINYPQKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIERLCMKERAKIYIPSDKAYGKKGFPGLVPPNTNLVFDIELITFK 126
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BLAST of mRNA_H-paniculata_contig861.16571.1 vs. uniprot
Match: A0A7S1CR57_9STRA (Peptidylprolyl isomerase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CR57_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.360e-22
Identity = 50/112 (44.64%), Postives = 62/112 (55.36%), Query Frame = 1 
Query:    1 MSRRSVQVEIFAAGDGINYP-------------------------------------QKVVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPNSALVFDLELITFN 225
            MS+  V VEIF AGDG+NYP                                     ++V+ GLDEGV+QLSIGE A++ IP+  AYGA GFPGLVPPN  L FD+ELI+F+
Sbjct:   13 MSKGRVTVEIFKAGDGVNYPKPGNVVTLHYTGYYGRAQTEFDSTRTRGKPFKFKLGAEQVIEGLDEGVAQLSIGEHAQIHIPSEKAYGAHGFPGLVPPNKDLTFDVELISFS 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig861.16571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTI7_ECTSI6.670e-3663.06Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A7S2C1G0_9STRA4.760e-2954.95Peptidylprolyl isomerase n=1 Tax=Florenciella parv... [more]
A0A6U1QP22_9STRA1.180e-2754.72Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japoni... [more]
F0YHE6_AURAN4.660e-2750.46Peptidylprolyl isomerase n=1 Tax=Aureococcus anoph... [more]
A0A8J2T2V8_9STRA5.570e-2650.94Peptidylprolyl isomerase n=1 Tax=Pelagomonas calce... [more]
A0A485LR83_9STRA1.070e-2347.17Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID... [more]
A0A836CL56_9STRA1.860e-2376.36Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
K3WSB6_GLOUD1.880e-2347.17Peptidylprolyl isomerase n=1 Tax=Globisporangium u... [more]
A0A024TRW9_9STRA3.060e-2346.23Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID... [more]
A0A7S1CR57_9STRA2.360e-2244.64Peptidylprolyl isomerase n=1 Tax=Bicosoecida sp. C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig861contigH-paniculata_contig861:2082..4378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue7.8e-27
Seed eggNOG ortholog2880.D7FTI7
KEGG koko:K09568,ko:K15382
KEGG TC9.A.58.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptidyl-prolyl cis-trans isomerase
EggNOG OGsCOG0545@1,KOG0544@2759
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-21_001540.1
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000,ko03110
Exons3
Model size228
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig861.16571.1prot_H-paniculata_contig861.16571.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig861 2082..4378 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931082.3148565-CDS-H-paniculata_contig861:2081..21861622931082.3148565-CDS-H-paniculata_contig861:2081..2186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig861 2082..2186 -
1691481581.5655925-CDS-H-paniculata_contig861:2081..21861691481581.5655925-CDS-H-paniculata_contig861:2081..2186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig861 2082..2186 -
1622931082.3290584-CDS-H-paniculata_contig861:2424..24811622931082.3290584-CDS-H-paniculata_contig861:2424..2481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig861 2425..2481 -
1691481581.5838003-CDS-H-paniculata_contig861:2424..24811691481581.5838003-CDS-H-paniculata_contig861:2424..2481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig861 2425..2481 -
1622931082.3481846-CDS-H-paniculata_contig861:4312..43781622931082.3481846-CDS-H-paniculata_contig861:4312..4378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig861 4313..4378 -
1691481581.5958555-CDS-H-paniculata_contig861:4312..43781691481581.5958555-CDS-H-paniculata_contig861:4312..4378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig861 4313..4378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig861.16571.1

>prot_H-paniculata_contig861.16571.1 ID=prot_H-paniculata_contig861.16571.1|Name=mRNA_H-paniculata_contig861.16571.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MSRRSVQVEIFAAGDGINYPQKVVPGLDEGVSQLSIGERAKVTIPAASAY
GARGFPGLVPPNSALVFDLELITFN*
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mRNA from alignment at H-paniculata_contig861:2082..4378-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig861.16571.1 ID=mRNA_H-paniculata_contig861.16571.1|Name=mRNA_H-paniculata_contig861.16571.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2297bp|location=Sequence derived from alignment at H-paniculata_contig861:2082..4378- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGAGGCGATCGGTCCAAGTTGAAATATTTGCCGCTGGCGATGGTAT
CAACTACCCCCAGAAGGTGCTGTAACTACACAACAGCGCCCCAGCTAATG
CGAACTTGGTTTGAGTTTTGCGAGTTACGCCGCATTTTTATTTTGCTCCG
AAGATACCTCACCCAGACTATGGGTGTGAGAGGGATTGGCGAACACTAGA
ATTCCTGGGTTTGTGTTCGAGAGAACTTTTGGTGACTGCATCCGACCGTA
GGTGACTTATCCTGTCAACACGCATGGTTTCCCATATCCTCGCTCGCTTT
CGTCGTTTCGAAAGTACAAGCCATATTGCTACTGCTACTATTAATAATAG
GAGGTGACCGTTGTAGAACGTGTGTTCAAATGTACACTAGCGAAGAGGCG
AGGGTTCATCTCTACACCGCATTCTTCCTGTGAATGTCGTACACACACAG
GGACAAACGGTGACCGTACACTACACCGCGTATCTTGAAGACGGAACTCA
GTTTGACTCCTCGAGGTATCGGGGCAAACCGTTCAAGTTCAAGTTGGGCA
ACGAGCAGGCGAGTCACCATGCAAACCCTCGACCAGCTGTTGATTTTTCG
AATGAATAGAATGTTCGCGAGATGCTCATATCTACATTAGGTGGTCGGTG
GCACTGACGCCCGACGGTATTCTCGTGACATGGGGAGCCTTCTGACTCGC
AAAGAAATGGAGTTATGTAATTGCACACCATCACTGCCCGGAGAATATCA
TGGCCTACAGGATCGGCCATTACATGACGTCTCAGTCGTGTCATCATGTA
TGCATAACTTGACCACCTTCGATATCATCCAACGTTGTTTTTATTGTTGA
GCTCTAACAAACACTGAAAAGATGCAGCCATCATGCCGCATTTCCCTACT
TTGGTTCCCCACTCACTAACGGACTCTTTGAATGGGATTGGGATCAATTT
TAATTTTAGAATTGAGGAGAGAATGCAATTGAACCCCCCCAAAATGATAT
TTTATCGATCATAATCCGCCTGGTCCAACTTGAAAAAGGTTGCTGGTTTG
TCTCCATGTCATATATATGCCAGCACATGGTACAATTGCACGCTACACAC
GCGGATATAGGAGCTGACACACCACCACGGATATAGTGTTGATGTGCATA
TATACTGTGATATCTGTTTCTTCTATCGCCATGCACACTTCTACTGTAAT
AGTCTCTTCAATCCATATCGAACTTTCTGTCACCGCTCAAACCACTGCAT
CTATCATCGGCACGTACCATACACGTAAAGGACGCGCAAACACACAACAT
GCTGTACTCACTACCACTGTTGTGTTTCGAGCATGGTAACAACAAACTCA
ACAATATAACAAGAAGAACCATAAAAAGACGGTACCTCATTGAGCGGGAC
AGATGATTCGAATATGCTATACTATCGCTGCAAATATCCAACGTCAATCA
CCACAATCATCTACCATCCTGTGATTGGCTCTTTTGACCCGAACAGTTAT
GATTCTGCCCTACTACTTGTAGACTTATGTGCTTTGTGCTTTGATCTCCG
TCTAGTGTCTCTCTCCTGTGTGGGCCGTTGCCGTGCACAACAGGTGTAGC
GTAGTCTGTTGAGATTTTCATCCAATTCTCTGTCACCGCTGAAACGAGTC
TCCTGTAGTTCTGTCCACGGCACTACATGCGCACACAGAGACTATGGGCT
GTGCGCAAAGTTCCCCGGACTCTGAGCTTCTGTCTCCTGATGCAACCATC
TTCGTCCATCGGATGGGATTGCTGGGTCTTTTATAGTGGTCAAATAATTA
CTTCTTTGATCGCGATACATTTTGAGATTGCTGCTGAAAAAGCAACCGTG
TATGTTTACACAGCACACTTTTATTATACGGCGTATTTTGCACACAGGTA
GTGCCAGGCTTAGATGAGGGTGTGAGTCAGCTCAGCATAGGGGAGCGTGC
CAAGGTGAGCAAGACCATCGCGATTAAATATGTCGTGCTGCGAATGCTTC
GGCAATCATGTCCATTGCACTCTCTGCTACATATAGATGTCGGTATTTCG
TATTGGGAAAATCTACGCAATTATCCTCAATGACCGTGGCAGTGGTTGAT
ACATTGCAGCGTGAAGATTGGGCGATCGATCGACTTGGCTAAATTATTGA
AAAATATTTTGAGCTCTGTGAACTGCATCACTTTGGAATCAGGTGACTAT
TCCGGCAGCGTCTGCCTACGGAGCACGAGGATTCCCTGGGCTAGTCCCGC
CGAACTCCGCTCTCGTGTTTGACCTGGAGCTGATAACTTTCAACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig861:2082..4378-

>mRNA_H-paniculata_contig861.16571.1 ID=mRNA_H-paniculata_contig861.16571.1|Name=mRNA_H-paniculata_contig861.16571.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig861:2082..4378- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGAGGCGATCGGTCCAAGTTGAAATATTTGCCGCTGGCGATGGTAT
CAACTACCCCCAGAAGATGTCGAGGCGATCGGTCCAAGTTGAAATATTTG
CCGCTGGCGATGGTATCAACTACCCCCAGAAGGTAGTGCCAGGCTTAGAT
GAGGGTGTGAGTCAGCTCAGCATAGGGGAGCGTGCCAAGGTAGTGCCAGG
CTTAGATGAGGGTGTGAGTCAGCTCAGCATAGGGGAGCGTGCCAAGGTGA
CTATTCCGGCAGCGTCTGCCTACGGAGCACGAGGATTCCCTGGGCTAGTC
CCGCCGAACTCCGCTCTCGTGTTTGACCTGGAGCTGATAACTTTCAACTA
AGTGACTATTCCGGCAGCGTCTGCCTACGGAGCACGAGGATTCCCTGGGC
TAGTCCCGCCGAACTCCGCTCTCGTGTTTGACCTGGAGCTGATAACTTTC
AACTAA
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