mRNA_H-paniculata_contig8603.16567.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8603.16567.1
Unique NamemRNA_H-paniculata_contig8603.16567.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8603.16567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8603contigH-paniculata_contig8603:4898..6848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1406
Cds size1404
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.852512-CDS-H-paniculata_contig8603:4897..51581622931081.852512-CDS-H-paniculata_contig8603:4897..5158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8603 4898..5158 -
1691481581.3895578-CDS-H-paniculata_contig8603:4897..51581691481581.3895578-CDS-H-paniculata_contig8603:4897..5158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8603 4898..5158 -
1622931081.8684008-CDS-H-paniculata_contig8603:5705..68481622931081.8684008-CDS-H-paniculata_contig8603:5705..6848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8603 5706..6848 -
1691481581.3983006-CDS-H-paniculata_contig8603:5705..68481691481581.3983006-CDS-H-paniculata_contig8603:5705..6848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8603 5706..6848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8603.16567.1prot_H-paniculata_contig8603.16567.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8603 4898..6848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8603.16567.1

>prot_H-paniculata_contig8603.16567.1 ID=prot_H-paniculata_contig8603.16567.1|Name=mRNA_H-paniculata_contig8603.16567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=468bp
TAEGSSALIYAAGRASITVEDSTFVVDDARGDGYPSLSLAEGALTSSLLN
ERQEKEEDAVRRRVVYAGIDTPLYATGNKFTFTPKSAAAASDDADPDHSP
SGFVVTHNDNHPVSSRIIVSSAPSSSSHPRPETHIQRSVYTNNIQESPPS
TAAQGVPAFYSGDTTSEIANSASSTSSASPSHDVVTSANLNTTSLLECSA
SPDGIIKLTTCDELKAAIEAATTGGIEGGGGQLSGSSCTFYLAKSVTCDS
AITVASGQDVTITGSNATEADLEMTTDPSYLYSWISPASPFTASQEAITT
SSFTSSGEDEAAAAAAKGASLFVVEPGGRLTLRALGFSGAEVLTSAVRVV
HNYGDLYVSFCVLEGRQLDNAAFGEQVLGGAIYSQGDGGVVSVSASTFVD
FRASRSGGAIYVRGGRARLTINQGTFVRNGVTSMSSTARGSGGAVFAAAT
SFLEIKESEFDDNFGLRG
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mRNA from alignment at H-paniculata_contig8603:4898..6848-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8603.16567.1 ID=mRNA_H-paniculata_contig8603.16567.1|Name=mRNA_H-paniculata_contig8603.16567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1951bp|location=Sequence derived from alignment at H-paniculata_contig8603:4898..6848- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGCCGAAGGATCCTCGGCGTTGATTTACGCTGCGGGTAGAGCATCGAT
CACGGTCGAGGACTCGACCTTTGTCGTCGATGACGCTCGAGGCGACGGCT
ACCCTTCTCTTTCTTTGGCAGAAGGCGCTCTTACAAGCAGCTTATTAAAC
GAGAGACAAGAAAAGGAGGAAGACGCTGTCAGAAGAAGGGTGGTGTATGC
CGGAATAGACACGCCTCTCTATGCGACGGGTAATAAGTTTACCTTCACAC
CCAAGTCAGCGGCCGCGGCGAGCGACGATGCCGACCCCGACCATTCCCCG
TCAGGCTTTGTTGTCACACATAACGATAACCATCCCGTCTCTTCCCGTAT
TATCGTGTCGTCAGCGCCGTCGTCGTCATCCCACCCACGCCCAGAAACGC
ACATCCAGAGATCGGTCTACACCAACAACATCCAGGAATCCCCTCCGTCT
ACTGCTGCACAGGGTGTCCCCGCGTTTTATTCAGGGGATACTACTTCTGA
GATAGCCAATAGTGCCTCCTCAACCTCTTCTGCCTCTCCCTCCCACGACG
TCGTAACATCAGCAAATTTAAACACCACATCATTGTTAGAATGCAGCGCA
AGTCCAGATGGCATAATCAAGCTGACGACGTGCGACGAGCTCAAGGCCGC
GATCGAGGCCGCCACCACCGGGGGAATCGAAGGAGGTGGAGGGCAGCTCA
GTGGCAGCTCCTGCACATTCTACCTTGCCAAGAGTGTGACGTGCGACTCC
GCCATCACCGTCGCTTCCGGGCAAGATGTGACGATAACAGGGTCAAATGC
TACAGAAGCCGACCTCGAGATGACCACGGACCCGTCCTACTTGTATTCAT
GGATATCGCCGGCATCCCCCTTTACCGCCAGTCAAGAAGCCATTACCACC
TCCTCTTTCACCTCCTCCGGGGAAGATGAAGCCGCCGCCGCAGCCGCAAA
GGGGGCGAGTCTGTTTGTTGTGGAACCTGGCGGGCGGCTGACCTTACGCG
CCCTGGGGTTTAGCGGAGCCGAGGTTCTCACTAGCGCAGTTCGAGTCGTG
CACAACTACGGCGATCTCTACGTGTCATTTTGCGTGCTGGAAGGACGGCA
ACTGGACAATGCTGCATTCGGAGAACAAGTCTTAGGAGGGGCGGTAAGTA
TCTGGGGTCCTAGGTCATGTTCCGTGTTCCGGGCATGGACGAGCCCGCGG
TTGGAGAGAGAGGGGGATGGCTGGGTCGTATCTCAAATCTGTATATATAT
ATATATATATATATATATACTTCTCGGCATCGGCGGAAATTGGACGTAGT
GTTGAGCAGCGGTGAAAGTAGACTTTGTTGCGTCTTTTTGTCTCTTTTAT
TTGGTTGCCTCTTGGTATTTGACGCAACCTGCCACTCTCCAATTGTTGTT
GTGGTCGGAACTTTGTCAAGGTTTTGTCGCGTTTTGGTCAACAGTCCACG
CCGCAGTTGAGTTCGGCCCGGGTTGTCCGTCGTTCCAATAGCACCGCAGG
ATAACCGCAGGTGGCACAAACAGTAATGTTTTCACGTCCATCTATTAAGT
TTACTTCTCTCTCACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTG
CTCTATCCCTGTCGGAAGTCGTTTCGACTTTTCCTCTTACCCTTCCCCCC
GCCGTCCTCACTCCTCCACCCGTTCCACCGTGATCGCCAGATTTACTCGC
AGGGCGATGGCGGCGTCGTTTCGGTGTCAGCGTCCACCTTTGTCGATTTC
AGAGCCTCTCGGTCGGGTGGAGCCATCTACGTAAGGGGGGGAAGAGCTCG
GTTGACTATCAACCAAGGTACCTTCGTGAGGAACGGCGTCACGTCGATGT
CATCGACGGCGCGGGGGAGCGGGGGTGCGGTTTTCGCCGCGGCGACGAGT
TTTCTGGAGATCAAAGAGTCGGAATTTGACGACAATTTCGGGTTGAGGGG
C
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Coding sequence (CDS) from alignment at H-paniculata_contig8603:4898..6848-

>mRNA_H-paniculata_contig8603.16567.1 ID=mRNA_H-paniculata_contig8603.16567.1|Name=mRNA_H-paniculata_contig8603.16567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2808bp|location=Sequence derived from alignment at H-paniculata_contig8603:4898..6848- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGCCGAAGGATCCTCGGCGTTGATTTACGCTGCGGGTAGAGCATCGAT
CACGGTCGAGGACTCGACCTTTGTCGTCGATGACGCTCGAGGCGACGGCT
ACCCTTCTCTTTCTTTGGCAGAAGGCGCTCTTACAAGCAGCTTATTAAAC
GAGAGACAAGAAAAGGAGGAAGACGCTGTCAGAAGAAGGGTGGTGTATGC
CGGAATAGACACGCCTCTCTATGCGACGGGTAATAAGTTTACCTTCACAC
CCAAGTCAGCGGCCGCGGCGAGCGACGATGCCGACCCCGACCATTCCCCG
TCAGGCTTTGTTGTCACACATAACGATAACCATCCCGTCTCTTCCCGTAT
TATCGTGTCGTCAGCGCCGTCGTCGTCATCCCACCCACGCCCAGAAACGC
ACATCCAGAGATCGGTCTACACCAACAACATCCAGGAATCCCCTCCGTCT
ACTGCTGCACAGGGTGTCCCCGCGTTTTATTCAGGGGATACTACTTCTGA
GATAGCCAATAGTGCCTCCTCAACCTCTTCTGCCTCTCCCTCCCACGACG
TCGTAACATCAGCAAATTTAAACACCACATCATTGTTAGAATGCAGCGCA
AGTCCAGATGGCATAATCAAGCTGACGACGTGCGACGAGCTCAAGGCCGC
GATCGAGGCCGCCACCACCGGGGGAATCGAAGGAGGTGGAGGGCAGCTCA
GTGGCAGCTCCTGCACATTCTACCTTGCCAAGAGTGTGACGTGCGACTCC
GCCATCACCGTCGCTTCCGGGCAAGATGTGACGATAACAGGGTCAAATGC
TACAGAAGCCGACCTCGAGATGACCACGGACCCGTCCTACTTGTATTCAT
GGATATCGCCGGCATCCCCCTTTACCGCCAGTCAAGAAGCCATTACCACC
TCCTCTTTCACCTCCTCCGGGGAAGATGAAGCCGCCGCCGCAGCCGCAAA
GGGGGCGAGTCTGTTTGTTGTGGAACCTGGCGGGCGGCTGACCTTACGCG
CCCTGGGGTTTAGCGGAGCCGAGGTTCTCACTAGCGCAGTTCGAGTCGTG
CACAACTACGGCGATCTCTACGTGTCATTTTGCGTGCTGGAAGGACGGCA
ACTGGACAATGCTGCATTCGGAGAACAAGTCTTAGGAGGGGCGACGGCCG
AAGGATCCTCGGCGTTGATTTACGCTGCGGGTAGAGCATCGATCACGGTC
GAGGACTCGACCTTTGTCGTCGATGACGCTCGAGGCGACGGCTACCCTTC
TCTTTCTTTGGCAGAAGGCGCTCTTACAAGCAGCTTATTAAACGAGAGAC
AAGAAAAGGAGGAAGACGCTGTCAGAAGAAGGGTGGTGTATGCCGGAATA
GACACGCCTCTCTATGCGACGGGTAATAAGTTTACCTTCACACCCAAGTC
AGCGGCCGCGGCGAGCGACGATGCCGACCCCGACCATTCCCCGTCAGGCT
TTGTTGTCACACATAACGATAACCATCCCGTCTCTTCCCGTATTATCGTG
TCGTCAGCGCCGTCGTCGTCATCCCACCCACGCCCAGAAACGCACATCCA
GAGATCGGTCTACACCAACAACATCCAGGAATCCCCTCCGTCTACTGCTG
CACAGGGTGTCCCCGCGTTTTATTCAGGGGATACTACTTCTGAGATAGCC
AATAGTGCCTCCTCAACCTCTTCTGCCTCTCCCTCCCACGACGTCGTAAC
ATCAGCAAATTTAAACACCACATCATTGTTAGAATGCAGCGCAAGTCCAG
ATGGCATAATCAAGCTGACGACGTGCGACGAGCTCAAGGCCGCGATCGAG
GCCGCCACCACCGGGGGAATCGAAGGAGGTGGAGGGCAGCTCAGTGGCAG
CTCCTGCACATTCTACCTTGCCAAGAGTGTGACGTGCGACTCCGCCATCA
CCGTCGCTTCCGGGCAAGATGTGACGATAACAGGGTCAAATGCTACAGAA
GCCGACCTCGAGATGACCACGGACCCGTCCTACTTGTATTCATGGATATC
GCCGGCATCCCCCTTTACCGCCAGTCAAGAAGCCATTACCACCTCCTCTT
TCACCTCCTCCGGGGAAGATGAAGCCGCCGCCGCAGCCGCAAAGGGGGCG
AGTCTGTTTGTTGTGGAACCTGGCGGGCGGCTGACCTTACGCGCCCTGGG
GTTTAGCGGAGCCGAGGTTCTCACTAGCGCAGTTCGAGTCGTGCACAACT
ACGGCGATCTCTACGTGTCATTTTGCGTGCTGGAAGGACGGCAACTGGAC
AATGCTGCATTCGGAGAACAAGTCTTAGGAGGGGCGATTTACTCGCAGGG
CGATGGCGGCGTCGTTTCGGTGTCAGCGTCCACCTTTGTCGATTTCAGAG
CCTCTCGGTCGGGTGGAGCCATCTACGTAAGGGGGGGAAGAGCTCGGTTG
ACTATCAACCAAGGTACCTTCGTGAGGAACGGCGTCACGTCGATGTCATC
GACGGCGCGGGGGAGCGGGGGTGCGGTTTTCGCCGCGGCGACGAGTTTTC
TGGAGATCAAAGAGTCGGAATTTGACGACAATTTCGGGTTGAGGGGCATT
TACTCGCAGGGCGATGGCGGCGTCGTTTCGGTGTCAGCGTCCACCTTTGT
CGATTTCAGAGCCTCTCGGTCGGGTGGAGCCATCTACGTAAGGGGGGGAA
GAGCTCGGTTGACTATCAACCAAGGTACCTTCGTGAGGAACGGCGTCACG
TCGATGTCATCGACGGCGCGGGGGAGCGGGGGTGCGGTTTTCGCCGCGGC
GACGAGTTTTCTGGAGATCAAAGAGTCGGAATTTGACGACAATTTCGGGT
TGAGGGGC
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