mRNA_H-paniculata_contig8602.16565.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8602.16565.1
Unique NamemRNA_H-paniculata_contig8602.16565.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8602.16565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8602contigH-paniculata_contig8602:1448..1973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size185
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.7081726-CDS-H-paniculata_contig8602:1447..15871622931081.7081726-CDS-H-paniculata_contig8602:1447..1587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8602 1448..1587 -
1691481581.3393066-CDS-H-paniculata_contig8602:1447..15871691481581.3393066-CDS-H-paniculata_contig8602:1447..1587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8602 1448..1587 -
1622931081.728671-CDS-H-paniculata_contig8602:1930..19731622931081.728671-CDS-H-paniculata_contig8602:1930..1973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8602 1931..1973 -
1691481581.3552694-CDS-H-paniculata_contig8602:1930..19731691481581.3552694-CDS-H-paniculata_contig8602:1930..1973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8602 1931..1973 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8602.16565.1prot_H-paniculata_contig8602.16565.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8602 1448..1973 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8602.16565.1

>prot_H-paniculata_contig8602.16565.1 ID=prot_H-paniculata_contig8602.16565.1|Name=mRNA_H-paniculata_contig8602.16565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MVPHPWHLHAGRIHSALTHASAGLHVEDHPLLLQYKGMRARRTSQNAVNH
LRYNADMVMLA
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mRNA from alignment at H-paniculata_contig8602:1448..1973-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8602.16565.1 ID=mRNA_H-paniculata_contig8602.16565.1|Name=mRNA_H-paniculata_contig8602.16565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=526bp|location=Sequence derived from alignment at H-paniculata_contig8602:1448..1973- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTACCTCACCCTTGGCATCTGCACGCTGGACGCATCCACAGTGAGTA
TTTTGTCTTTGCTGTTTGTGCAACTTTATAAAAAATACGCCATTGCTGTA
ACATGGAAGCCCATCGACCGCTTCAGCCCACTATACCCAATGCTTTATGG
GAGGAGAGAGTAGCGTGTACACGGCATAATAGAATGTGCAACATGATTGC
ATCAAGGTGTAATGTGAACGTGCGATTGGGGTATCGCTGGACGTCTATTC
TACGTTTTTTCACATGTTGCACGATAAACTCCGCCTGTTGAGGCATATGA
ACGACCACGGAGGTATTGGAGCACACACATATCGGGTGTATTCCAAACAT
CAACGCATTCCGTCAACTTTCTTACTGTGTTTGCAGGTGCTCTGACCCAT
GCATCGGCAGGATTGCACGTTGAGGATCACCCACTTCTCCTCCAGTACAA
GGGTATGAGGGCCAGGCGCACATCGCAGAATGCTGTCAATCATCTACGTT
ACAATGCAGACATGGTGATGTTGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig8602:1448..1973-

>mRNA_H-paniculata_contig8602.16565.1 ID=mRNA_H-paniculata_contig8602.16565.1|Name=mRNA_H-paniculata_contig8602.16565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig8602:1448..1973- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTACCTCACCCTTGGCATCTGCACGCTGGACGCATCCACAATGGTAC
CTCACCCTTGGCATCTGCACGCTGGACGCATCCACAGTGCTCTGACCCAT
GCATCGGCAGGATTGCACGTTGAGGATCACCCACTTCTCCTCCAGTACAA
GGGTATGAGGGCCAGGCGCACATCGCAGAATGCTGTCAATCATCTACGTT
ACAATGCAGACATGGTGATGTTGGCAGTGCTCTGACCCATGCATCGGCAG
GATTGCACGTTGAGGATCACCCACTTCTCCTCCAGTACAAGGGTATGAGG
GCCAGGCGCACATCGCAGAATGCTGTCAATCATCTACGTTACAATGCAGA
CATGGTGATGTTGGCA
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