mRNA_H-paniculata_contig8594.16554.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8594.16554.1
Unique NamemRNA_H-paniculata_contig8594.16554.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8594.16554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8594contigH-paniculata_contig8594:2824..3172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size349
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8594.16554.1prot_H-paniculata_contig8594.16554.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8594 2831..3151 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931079.5597968-UTR-H-paniculata_contig8594:2823..28301622931079.5597968-UTR-H-paniculata_contig8594:2823..2830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8594 2824..2830 +
1691481580.3272927-UTR-H-paniculata_contig8594:2823..28301691481580.3272927-UTR-H-paniculata_contig8594:2823..2830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8594 2824..2830 +
1622931079.5847802-UTR-H-paniculata_contig8594:3151..31721622931079.5847802-UTR-H-paniculata_contig8594:3151..3172Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8594 3152..3172 +
1691481580.3518045-UTR-H-paniculata_contig8594:3151..31721691481580.3518045-UTR-H-paniculata_contig8594:3151..3172Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8594 3152..3172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931079.5721798-CDS-H-paniculata_contig8594:2830..31511622931079.5721798-CDS-H-paniculata_contig8594:2830..3151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8594 2831..3151 +
1691481580.3391058-CDS-H-paniculata_contig8594:2830..31511691481580.3391058-CDS-H-paniculata_contig8594:2830..3151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8594 2831..3151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8594.16554.1

>prot_H-paniculata_contig8594.16554.1 ID=prot_H-paniculata_contig8594.16554.1|Name=mRNA_H-paniculata_contig8594.16554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MYKYSAPRLKNASAMGAKQTKERKGPLLFQSSVRSIDGPTRHENMEIYIF
IIQSPCAYIMTRVTTKHNSGLFIQTAPQVHGFFRTCETLRVLRSFFCHED
EWRTRD*
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mRNA from alignment at H-paniculata_contig8594:2824..3172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8594.16554.1 ID=mRNA_H-paniculata_contig8594.16554.1|Name=mRNA_H-paniculata_contig8594.16554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=349bp|location=Sequence derived from alignment at H-paniculata_contig8594:2824..3172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTATAAATGTATAAATATTCGGCGCCCAGGTTAAAGAACGCATCTGCCA
TGGGGGCAAAACAAACAAAGGAGCGAAAAGGACCATTACTTTTCCAGTCT
TCCGTCCGATCCATTGACGGACCAACGCGACACGAAAACATGGAAATATA
TATATTTATCATTCAGTCTCCATGTGCATATATAATGACCCGTGTCACCA
CAAAGCATAACAGTGGTCTATTTATTCAAACAGCACCACAAGTGCATGGC
TTTTTTCGCACTTGTGAAACATTACGTGTTCTGCGATCATTTTTTTGCCA
TGAAGACGAGTGGAGGACTCGCGACTGATACCTACCGACACCTCGTTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig8594:2824..3172+

>mRNA_H-paniculata_contig8594.16554.1 ID=mRNA_H-paniculata_contig8594.16554.1|Name=mRNA_H-paniculata_contig8594.16554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig8594:2824..3172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATAAATATTCGGCGCCCAGGTTAAAGAACGCATCTGCCATGGGGGC
AAAACAAACAAAGGAGCGAAAAGGACCATTACTTTTCCAGTCTTCCGTCC
GATCCATTGACGGACCAACGCGACACGAAAACATGGAAATATATATATTT
ATCATTCAGTCTCCATGTGCATATATAATGACCCGTGTCACCACAAAGCA
TAACAGTGGTCTATTTATTCAAACAGCACCACAAGTGCATGGCTTTTTTC
GCACTTGTGAAACATTACGTGTTCTGCGATCATTTTTTTGCCATGAAGAC
GAGTGGAGGACTCGCGACTGAATGTATAAATATTCGGCGCCCAGGTTAAA
GAACGCATCTGCCATGGGGGCAAAACAAACAAAGGAGCGAAAAGGACCAT
TACTTTTCCAGTCTTCCGTCCGATCCATTGACGGACCAACGCGACACGAA
AACATGGAAATATATATATTTATCATTCAGTCTCCATGTGCATATATAAT
GACCCGTGTCACCACAAAGCATAACAGTGGTCTATTTATTCAAACAGCAC
CACAAGTGCATGGCTTTTTTCGCACTTGTGAAACATTACGTGTTCTGCGA
TCATTTTTTTGCCATGAAGACGAGTGGAGGACTCGCGACTGA
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