mRNA_H-paniculata_contig8581.16546.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8581.16546.1
Unique NamemRNA_H-paniculata_contig8581.16546.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8581.16546.1 vs. uniprot
Match: A0A6H5JZ77_9PHAE (Glyco_hydro_114 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ77_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 4.060e-50
Identity = 78/107 (72.90%), Postives = 88/107 (82.24%), Query Frame = 1
Query:   25 WNYNLNTPVDTSIDVNVFFIDMDGAQETIDTIHGMGKVAVCYISIGTVEEWRDDASQFPSTAVGGDVDGWAGERWLDVKDKTVRSIMTERVEKAARMNCDAVEPDNM 345
            WNYNL TPVDTS DV+VFFIDMD  Q  ID +H  GK  VCYISIGTVE+WRDDA +FPS+A+GGDV GWAGE+W+DV D+ VR IMT RVE A+ MNCDAVEPDNM
Sbjct:  151 WNYNLRTPVDTSADVDVFFIDMDAGQGVIDELHDKGKGVVCYISIGTVEDWRDDAKEFPSSAIGGDVSGWAGEKWVDVNDQDVREIMTARVEMASSMNCDAVEPDNM 257          
BLAST of mRNA_H-paniculata_contig8581.16546.1 vs. uniprot
Match: D7FRL2_ECTSI (Endo alpha-1,4 polygalactosaminidase precusor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL2_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.450e-47
Identity = 76/115 (66.09%), Postives = 89/115 (77.39%), Query Frame = 1
Query:    1 WIPKIGDHWNYNLNTPVDTSIDVNVFFIDMDGAQETIDTIHGMGKVAVCYISIGTVEEWRDDASQFPSTAVGGDVDGWAGERWLDVKDKTVRSIMTERVEKAARMNCDAVEPDNM 345
            W+PK+GD WNYNLNTPVDT     VFFIDMD AQ+TID +HG GK   CYIS+GTVE WR+DA  FPS+AVG   D W GE +LD+  ++VR +M  RVEKAARMNCDA+EPDNM
Sbjct:  820 WVPKVGDTWNYNLNTPVDTXXXXXVFFIDMDNAQDTIDELHGKGKYVSCYISVGTVESWREDAGAFPSSAVGNSWDDWQGENFLDITQQSVRDLMEARVEKAARMNCDAIEPDNM 934          
BLAST of mRNA_H-paniculata_contig8581.16546.1 vs. uniprot
Match: A0A534PN76_9DELT (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534PN76_9DELT)

HSP 1 Score: 135 bits (339), Expect = 5.630e-37
Identity = 62/116 (53.45%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    1 WIPKIGDHWNYNLNTPVDTSIDVNVFFIDM-DGAQETIDTIHGMGKVAVCYISIGTVEEWRDDASQFPSTAVGGDVDGWAGERWLDVKDKTVRSIMTERVEKAARMNCDAVEPDNM 345
            W P  G  W + L+   DT++D  +F ID+ D  Q T+DT+HG G+V VCY+S GT E WR DAS+FPS A+G  V GWAGE WLD +D TVRSIM  R++ A +  CD VEPDN+
Sbjct:   41 WHPASGTTWQWQLSGATDTTVDAAMFDIDLFDAPQSTLDTLHGKGRVVVCYLSAGTYENWRPDASRFPSGALGNPVAGWAGEWWLDTRDATVRSIMKARMDLAVQKKCDGVEPDNV 156          
BLAST of mRNA_H-paniculata_contig8581.16546.1 vs. uniprot
Match: A0A3G9GXE8_9PROT (Endo alpha-1,4 polygalactosaminidase precusor n=1 Tax=Hydrogenimonas sp. TaxID=2231112 RepID=A0A3G9GXE8_9PROT)

HSP 1 Score: 122 bits (307), Expect = 4.600e-32
Identity = 54/113 (47.79%), Postives = 77/113 (68.14%), Query Frame = 1
Query:   10 KIGDHWNYNLNTPVDTSIDVNVFFIDM-DGAQETIDTIHGMGKVAVCYISIGTVEEWRDDASQFPSTAVGGDVDGWAGERWLDVKDKTVRSIMTERVEKAARMNCDAVEPDNM 345
            K    W   L   +++  DV+++ ID+ D  QETI+ +HG G+  +CY S G+ EEWR+D  +FP  A+G D+DGW GERWLD+++KTV +IM ER+E A R  CD V+PDN+
Sbjct:   43 KSSTTWQLQLQGTINSDYDVDLYDIDLFDTPQETIEKLHGEGRTVICYFSAGSYEEWREDNGRFPKEALGKDLDGWEGERWLDIRNKTVWNIMEERIELAKRRGCDGVDPDNV 155          
BLAST of mRNA_H-paniculata_contig8581.16546.1 vs. uniprot
Match: A0A2S9Y4F7_9DELT (Glyco_hydro_114 domain-containing protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A2S9Y4F7_9DELT)

HSP 1 Score: 121 bits (304), Expect = 4.350e-31
Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 WIPKIGDHWNYNLNTPVDTSIDVNVFFIDM-DGAQETIDTIHGMGKVAVCYISIGTVEEWRDDASQFPSTAVGGDVDGWAGERWLDVKDKTVRSIMTERVEKAARMNCDAVEPDNM 345
            W P  G  W + L+  +DT+ DV V+ ID+ D    TI ++H  G+  +CY S G+ E+WR DA QFP  A+G  +DGW GERWLD++D  VR++M  R++ A    CDAVEPDN+
Sbjct:  102 WCPTPGTSWQWQLSGNLDTTFDVEVYDIDLFDTPPATIASLHDDGRAVICYFSAGSHEDWRPDADQFPPAAIGDPLDGWPGERWLDIRDAEVRALMQARLDLAQSAGCDAVEPDNV 217          
BLAST of mRNA_H-paniculata_contig8581.16546.1 vs. uniprot
Match: A0A7V4LGC7_9DELT (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V4LGC7_9DELT)

HSP 1 Score: 121 bits (303), Expect = 5.470e-31
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = 1
Query:    1 WIPKIGDHWNYNLNTPVDTSIDVNVFFIDM-DGAQETIDTIHGMGKVAVCYISIGTVEEWRDDASQFPSTAVGGDVDGWAGERWLDVKDKTVRSIMTERVEKAARMNCDAVEPDNM 345
            W P  G  W + L+ P+D S+DV+++ ID+ D  Q  ID +   G   +CY S G+ E+WR+DA  FP  AVG  +DGW GERWLD++   VR IM  R+++A    CD VEPDN+
Sbjct:  100 WRPAPGTRWQWQLSGPIDDSLDVDMYDIDLFDAPQAVIDGLRARGVAVICYFSAGSREDWREDAGDFPPAAVGEPLDGWPGERWLDIRSPDVRRIMQARLDRAVARRCDGVEPDNV 215          
BLAST of mRNA_H-paniculata_contig8581.16546.1 vs. uniprot
Match: UPI001656DE63 (endo alpha-1,4 polygalactosaminidase n=1 Tax=Nitrosophilus labii TaxID=2706014 RepID=UPI001656DE63)

HSP 1 Score: 119 bits (299), Expect = 5.870e-31
Identity = 50/114 (43.86%), Postives = 76/114 (66.67%), Query Frame = 1
Query:    7 PKIGDHWNYNLNTPVDTSIDVNVFFIDM-DGAQETIDTIHGMGKVAVCYISIGTVEEWRDDASQFPSTAVGGDVDGWAGERWLDVKDKTVRSIMTERVEKAARMNCDAVEPDNM 345
            P +   W++ L   ++   +V ++ ID+ D ++E I+T+H  GK  +CY S G+ E WR+DA +FP  A+G D+DGW GE+WLD+++ TVR IM ER++ A    CD VEPDN+
Sbjct:   33 PDVNTTWHWQLQGTINLDYNVELYDIDLFDTSEEIIETLHNQGKKVICYFSAGSYENWREDAYKFPKEAIGNDLDGWEGEKWLDIRNSTVREIMQERLDIAKNKGCDGVEPDNV 146          
BLAST of mRNA_H-paniculata_contig8581.16546.1 vs. uniprot
Match: A0A7X9IZM4_9DELT (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7X9IZM4_9DELT)

HSP 1 Score: 119 bits (298), Expect = 3.100e-30
Identity = 53/116 (45.69%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    1 WIPKIGDHWNYNLNTPVDTSIDVNVFFIDM-DGAQETIDTIHGMGKVAVCYISIGTVEEWRDDASQFPSTAVGGDVDGWAGERWLDVKDKTVRSIMTERVEKAARMNCDAVEPDNM 345
            W P  G  W + L   +D S+DV ++ ID+ +  Q  ID +   G V +CY S G+ EEWR+DA  FP+ AVG  +DGW GERWLD++   VR IM  R+++A    CD VEPDN+
Sbjct:  102 WRPAPGTRWQWQLTGTIDDSLDVEMYDIDLFEAPQAVIDGLRARGVVVICYFSAGSREEWREDAGDFPAAAVGEPLDGWPGERWLDIRSPDVRRIMQARLDRAVARRCDGVEPDNV 217          
BLAST of mRNA_H-paniculata_contig8581.16546.1 vs. uniprot
Match: A0A836UAD2_9BACT (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Candidatus Handelsmanbacteria bacterium TaxID=2099671 RepID=A0A836UAD2_9BACT)

HSP 1 Score: 117 bits (293), Expect = 3.940e-30
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    1 WIPKIGDHWNYNLNTPVDTSIDVNVFFIDM-DGAQETIDTIHGMGKVAVCYISIGTVEEWRDDASQFPSTAVGGDVDGWAGERWLDVKDKTVRSIMTERVEKAARMNCDAVEPDNM 345
            W P++   W + L   V+   DV V+ ID+ D  Q TID +H +G+  +CY S G+ EEWRDDA  FP   +G  +DGW GERWLD++  +VR IM  R++ A    CD VEPDNM
Sbjct:   27 WKPEVTTTWQWQLLGDVNIEYDVAVYDIDLFDVPQTTIDQLHTVGRKVMCYFSGGSFEEWRDDAGDFPKVVLGKGLDGWEGERWLDIRSASVRQIMATRLDLAVSRQCDGVEPDNM 142          
BLAST of mRNA_H-paniculata_contig8581.16546.1 vs. uniprot
Match: A0A1F3BM53_9DELT (Endo alpha-1,4 polygalactosaminidase (Fragment) n=1 Tax=Anaeromyxobacter sp. RBG_16_69_14 TaxID=1797238 RepID=A0A1F3BM53_9DELT)

HSP 1 Score: 117 bits (292), Expect = 4.030e-30
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = 1
Query:    1 WIPKIGDHWNYNLNTPVDTSIDVNVFFIDM-DGAQETIDTIHGMGKVAVCYISIGTVEEWRDDASQFPSTAVGGDVDGWAGERWLDVKDKTVRSIMTERVEKAARMNCDAVEPDNM 345
            W P  G  W + L   +DT +DV  + ID+ D +  TI T+   GK  +CY S G+ E WR D   FP+ A+G ++DGW GERWLD + ++VR+IM  R++ AA   C+AVEPDN+
Sbjct:   16 WQPAPGTSWQWQLTGSLDTGLDVEAYDIDLFDNSAGTIATLKAAGKKVICYFSAGSYENWRPDKGSFPAAALGNNLDGWPGERWLDTRSQSVRNIMAARMDLAASKGCNAVEPDNV 131          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8581.16546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ77_9PHAE4.060e-5072.90Glyco_hydro_114 domain-containing protein n=2 Tax=... [more]
D7FRL2_ECTSI1.450e-4766.09Endo alpha-1,4 polygalactosaminidase precusor n=1 ... [more]
A0A534PN76_9DELT5.630e-3753.45Endo alpha-1,4 polygalactosaminidase n=1 Tax=Delta... [more]
A0A3G9GXE8_9PROT4.600e-3247.79Endo alpha-1,4 polygalactosaminidase precusor n=1 ... [more]
A0A2S9Y4F7_9DELT4.350e-3146.55Glyco_hydro_114 domain-containing protein n=1 Tax=... [more]
A0A7V4LGC7_9DELT5.470e-3145.69Endo alpha-1,4 polygalactosaminidase n=1 Tax=Delta... [more]
UPI001656DE635.870e-3143.86endo alpha-1,4 polygalactosaminidase n=1 Tax=Nitro... [more]
A0A7X9IZM4_9DELT3.100e-3045.69Endo alpha-1,4 polygalactosaminidase n=1 Tax=Myxoc... [more]
A0A836UAD2_9BACT3.940e-3046.55Endo alpha-1,4 polygalactosaminidase n=1 Tax=Candi... [more]
A0A1F3BM53_9DELT4.030e-3044.83Endo alpha-1,4 polygalactosaminidase (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8581contigH-paniculata_contig8581:8589..9884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue9.9e-42
Seed eggNOG ortholog2880.D7FPZ5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Endo alpha-1,4 polygalactosaminidase
EggNOG OGs2RCTR@2759,COG3868@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size345
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8581.16546.1prot_H-paniculata_contig8581.16546.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8581 8589..9884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931077.9913168-CDS-H-paniculata_contig8581:8588..86791622931077.9913168-CDS-H-paniculata_contig8581:8588..8679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8581 8589..8679 +
1691481579.6945455-CDS-H-paniculata_contig8581:8588..86791691481579.6945455-CDS-H-paniculata_contig8581:8588..8679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8581 8589..8679 +
1622931078.0301306-CDS-H-paniculata_contig8581:9447..96231622931078.0301306-CDS-H-paniculata_contig8581:9447..9623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8581 9448..9623 +
1691481579.7123806-CDS-H-paniculata_contig8581:9447..96231691481579.7123806-CDS-H-paniculata_contig8581:9447..9623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8581 9448..9623 +
1622931078.056573-CDS-H-paniculata_contig8581:9806..98841622931078.056573-CDS-H-paniculata_contig8581:9806..9884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8581 9807..9884 +
1691481579.7210445-CDS-H-paniculata_contig8581:9806..98841691481579.7210445-CDS-H-paniculata_contig8581:9806..9884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8581 9807..9884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8581.16546.1

>prot_H-paniculata_contig8581.16546.1 ID=prot_H-paniculata_contig8581.16546.1|Name=mRNA_H-paniculata_contig8581.16546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
WIPKIGDHWNYNLNTPVDTSIDVNVFFIDMDGAQETIDTIHGMGKVAVCY
ISIGTVEEWRDDASQFPSTAVGGDVDGWAGERWLDVKDKTVRSIMTERVE
KAARMNCDAVEPDNM
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mRNA from alignment at H-paniculata_contig8581:8589..9884+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8581.16546.1 ID=mRNA_H-paniculata_contig8581.16546.1|Name=mRNA_H-paniculata_contig8581.16546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1296bp|location=Sequence derived from alignment at H-paniculata_contig8581:8589..9884+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGATTCCCAAGATCGGTGACCACTGGAACTACAACCTTAACACGCCCGT GGACACGAGTATTGATGTGAACGTCTTCTTCATCGACATGGGTGAGTCTT TCGTTGCATGATGATTTTTCATGTCCCGTCTGTACAATCTACTGGCAATC GCTTGATAGGTTGGATTTCGAGATTATGCGGATAATTTCACGTTGGTCTT GGATATTGGATGCATGCCATGATATACGCGGACCGAAGGCCGGGCAACTG TGTCAGTCTGCACGTATCAGCCATTCATGCATGTTTTATGCTTTTTCTGC ATTGTTCTGTGCACGGGCGACTTGATCGATACATAACGTGATGTCAGTGC ACTCAAAATGTAAATCCAACTGGTATATGCGACTATATGAAGTATTGTAC ACGGGCGACCATGCGTTATTTCCCTCGTATGTATGTGCATATGATACCTC AACCGTTACATGTCAATGAAAGATGGCATACTGCGGACGGTTGCTCGCGC GAGTATCATGTCAGTCAAATAGATCCAATGTCAACACAGTCAGATGCGAG TCTGTGCAACAAGTATACCATAGAGTTACAGAACCTGTTCTCTGTTGCTA AGAAAGAGAGTCCGCATCGACAGTACTTACAGCACCGGCACCGACAGGGT GTTGACACGGTGCTGCGCACAACGACTCCAGCGCTCTCTCGACGTTATTG ATTATCCAATTCAATTTTTCGTCTCTAGATCTTGGGGGGCTCTAGGGTTG ATAAGTACCATGTTGCTAGGTAGTTGAAGATCAGGTTACGTAGGCCGGAT TTAAAAATGGTTTCTCATCAGACCCCCGGTACCTCGTATTCCCCCTTCGT GCAACACAGATGGCGCACAAGAGACCATTGACACCATCCACGGCATGGGT AAGGTCGCCGTTTGCTATATCAGCATCGGTACCGTTGAAGAATGGCGAGA CGACGCCAGTCAGTTCCCTTCCACGGCCGTGGGTGGAGACGTTGACGGCT GGGCTGGCGAGCGTTGGCTCGACGTCAAGGATAAGGTATGAGGAGGGTAC CACTGTTTGTGTTTGTGTTGGTAGTGGTGTAGAGCTCTGTAACACTCTGA TACATGATGATTCCGTTATATGCGTGACTTCACATGCGCACATGCTTCGT TTTTTTTATGTGTATCGACTAATGCGTGTTTTCGCCGACGCTATGTGTGG TTTTATCTTGACTCACAGACTGTCCGATCCATCATGACCGAGCGTGTCGA GAAGGCTGCCAGGATGAACTGCGATGCCGTCGAGCCCGACAACATG
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Coding sequence (CDS) from alignment at H-paniculata_contig8581:8589..9884+

>mRNA_H-paniculata_contig8581.16546.1 ID=mRNA_H-paniculata_contig8581.16546.1|Name=mRNA_H-paniculata_contig8581.16546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig8581:8589..9884+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGATTCCCAAGATCGGTGACCACTGGAACTACAACCTTAACACGCCCGT
GGACACGAGTATTGATGTGAACGTCTTCTTCATCGACATGGTGGATTCCC
AAGATCGGTGACCACTGGAACTACAACCTTAACACGCCCGTGGACACGAG
TATTGATGTGAACGTCTTCTTCATCGACATGGATGGCGCACAAGAGACCA
TTGACACCATCCACGGCATGGGTAAGGTCGCCGTTTGCTATATCAGCATC
GGTACCGTTGAAGAATGGCGAGACGACGCCAGTCAGTTCCCTTCCACGGC
CGTGGGTGGAGACGTTGACGGCTGGGCTGGCGAGCGTTGGCTCGACGTCA
AGGATAAGATGGCGCACAAGAGACCATTGACACCATCCACGGCATGGGTA
AGGTCGCCGTTTGCTATATCAGCATCGGTACCGTTGAAGAATGGCGAGAC
GACGCCAGTCAGTTCCCTTCCACGGCCGTGGGTGGAGACGTTGACGGCTG
GGCTGGCGAGCGTTGGCTCGACGTCAAGGATAAGACTGTCCGATCCATCA
TGACCGAGCGTGTCGAGAAGGCTGCCAGGATGAACTGCGATGCCGTCGAG
CCCGACAACATGACTGTCCGATCCATCATGACCGAGCGTGTCGAGAAGGC
TGCCAGGATGAACTGCGATGCCGTCGAGCCCGACAACATG
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