mRNA_H-paniculata_contig858.16545.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig858.16545.1 vs. uniprot
Match: D8LDH8_ECTSI (Rab11C, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH8_ECTSI) HSP 1 Score: 207 bits (527), Expect = 3.860e-58 Identity = 108/198 (54.55%), Postives = 144/198 (72.73%), Query Frame = 2
Query: 341 QLEATSIAGVAAEEVMFPPLGEEKIYTLKFVLAGSSGVGKTQLARRIISGEFAETSRPTVGLEFGTRSLRCSNHSTIRAQIWDAAGELRFELVKETLFRGAVGVMLVYEISRRSTFDELPERLAYIRGHCHESIAIVMVGNKSDMSSKQREVSMVEGMRFARKHELDFFETSALENTNVEETFRQMVMSVARYLPQEK 934
Q+ A+ +AG + +++YTLKFVL GS GVGKT+LA + + + VG++FGTR+LR S+ ++RAQIWD AG F+ VK+ F G VGVMLVY+IS+RSTFD+L L+ +R + H+S+A+++VGNKSDMS+ QREVSMVEGMRFARKH +DF ETSAL +VEE RQ++MSVARYLPQ+K
Sbjct: 7 QMSASCMAGCSYSS------SGDRVYTLKFVLVGSRGVGKTRLAS-LFHRKKSGCPSAAVGMQFGTRTLRYSDSLSVRAQIWDTAGTFAFKSVKDAFFGGTVGVMLVYDISKRSTFDDLARWLSLVRENSHKSVALILVGNKSDMSTTQREVSMVEGMRFARKHGMDFVETSALRGLHVEEACRQLIMSVARYLPQDK 197
BLAST of mRNA_H-paniculata_contig858.16545.1 vs. uniprot
Match: A0A6H5KEC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC4_9PHAE) HSP 1 Score: 213 bits (543), Expect = 3.150e-57 Identity = 174/478 (36.40%), Postives = 233/478 (48.74%), Query Frame = 2
Query: 341 QLEATSIAGVAAEEVMFPPLGEEKIYTLKFVLAGSSGVGKTQLARRIISGEFAETSRPTVGLEFGTRSLRCSNHSTIRAQIWDAAGELRFELVKETLFRGAVGVMLVYEISRRSTFDELPERLAYIRGHCHESIAIVMVGNKSDMSSKQREVSMVEGMRFARKHELDFFETSALENTNVEETFRQMVMSVARYLPQEKPALASNCHDEVYLLPKGWIRVVDYDDSXXXXXXXXXXXXXXXXGVDAHETKQPQDGHETDETADSMTDNATNPSFDIASTRSDAPSRQHHHSEDSMNTSGTAAASTINDDEFNNAGRSTKDRGSSGSSNLSSKLDVSVFNSFVDYDQIQHSAAAXXXXXXXXXDDDTGALAATPS-VDPAKRFSIVRYENIWTGEQMKRLPLYPTGPSDSCIVSHVPRPPDPSSLTTD---AEKTSAGLGGSRGDRQQVRGRRQVEDSPRRIQLKLFLGGRPSWSFSSWK 1762
Q+ A +AG + +++YTLKFVL GS GVGKT+LA + S VG++FGTR+LR S+ ++RAQIWD AG L F+ VK+ F G VG +LVY+IS RSTFD+L L+ +R + H+S+A+V+VGNKSDMS+ QREVSMVEGMRFARKH +DF ETSAL +VEE RQ++MSVARYLPQ+K + + LP GWI + DD + G + +D T T SGT + + RS G +S + + + XXXXXXXXX A P+ V P + ++ YEN WTGE++ R PL+P GPS++C+VS V R P D A++ GG G+ +G R SWSFSS+K
Sbjct: 7 QMSANCMAGCSYSS------SGDRVYTLKFVLVGSRGVGKTRLASLFHRKKGGRPSA-AVGMQFGTRTLRYSDSLSVRAQIWDTAGTLHFKCVKDAYFEGTVGALLVYDISNRSTFDDLARWLSLVRENSHKSVALVLVGNKSDMSTTQREVSMVEGMRFARKHGMDFVETSALRGLHVEEACRQLIMSVARYLPQDKYVWSKKKRS--HPLPLGWIPITA-DDWGNDVTGGNEENAYPAIAI----RMDGGSGGSKNAVSDRETSVDTXXXXXXXXXXXXXXXXXXXXXXXXYRPSGTRLPYSGTPITTMDESRSPPSGGGRVASKIFGSSSIKPRGFCSSQNXXXXXXXXXXXXXXXXXXXXXXXXATRPNRVSPPR---VLWYENAWTGERVSRRPLHPAGPSEACVVSQVSRTLAPLRYLPDPVKAKRRGLVFGGGEGEAGAA-----------------MVGDRSSWSFSSFK 450
BLAST of mRNA_H-paniculata_contig858.16545.1 vs. uniprot
Match: A0A2D4C264_PYTIN (Rab11 family GTPase, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C264_PYTIN) HSP 1 Score: 160 bits (405), Expect = 1.540e-39 Identity = 88/205 (42.93%), Postives = 128/205 (62.44%), Query Frame = 2
Query: 395 PLGEEKIYTLKFVLAGSSGVGKTQLARRIISGEFAETSRPTVGLEFGTRSLRCSNHSTIRAQIWDAAGELRFELVKETLFRGAVGVMLVYEISRRSTFDELPERLAYIRGHCHESIAIVMVGNKSDMSS--KQREVSMVEGMRFARKHELDFFETSALENTNVEETFRQMVMSVARYL-PQEKPALASNCHDEVYLLPKGWIRVV 1000
P G+ + YTLK VL G SGVGK+ L R F S+ TVG EF T+S+R + ++AQ+WD++G+ RF+ + +R AVG M+VY+I+ R+TF+ + LA I HCHES+ ++VGNK D++ R+VS +E RFA KH ++F ETSAL+ TNV + F+++++ V R L P P + V LP GW RV+
Sbjct: 83 PSGDPE-YTLKVVLIGDSGVGKSNLVLRFAKNRFNAKSQQTVGFEFATKSIRVGDRR-LKAQLWDSSGQDRFQSLTAAYYRNAVGAMVVYDITNRATFESATKWLAQIHEHCHESLVTILVGNKCDLAHLPNSRQVSTLEAARFAAKHGMEFVETSALDATNVIDAFKKIIVPVGRLLSPSANP-------NNVVRLPAGWRRVL 278
BLAST of mRNA_H-paniculata_contig858.16545.1 vs. uniprot
Match: W2HQ38_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2HQ38_PHYPR) HSP 1 Score: 156 bits (394), Expect = 5.700e-39 Identity = 82/195 (42.05%), Postives = 122/195 (62.56%), Query Frame = 2
Query: 422 LKFVLAGSSGVGKTQLARRIISGEFAETSRPTVGLEFGTRSLRCSNHSTIRAQIWDAAGELRFELVKETLFRGAVGVMLVYEISRRSTFDELPERLAYIRGHCHESIAIVMVGNKSDMSS--KQREVSMVEGMRFARKHELDFFETSALENTNVEETFRQMVMSVARYLPQEKPALASNCHDEVYLLPKGWIRVV 1000
LK VL G SGVGK+ L R ++ S TVG EF T+++R + +RAQIWD AG+ RF+ + +R AVG M+VY+I+ RS+F+ + LA + H HES+ +++VGNK D++ + REVS +E RFA KH ++F ETSAL+ TNV + F+++++ V R L +P ++ LP GW RV+
Sbjct: 6 LKVVLIGDSGVGKSNLVMRFTKNKYMPQSVQTVGFEFATKTIRVGDRR-LRAQIWDTAGQERFQSLTAAYYRNAVGAMIVYDITNRSSFEHVTGWLAQVHEHSHESLVLILVGNKCDLAHLPESREVSTLEAARFAAKHSMEFLETSALDATNVVDAFKKLIVPVGRLLSPTEPK-------KIARLPPGWRRVL 192
BLAST of mRNA_H-paniculata_contig858.16545.1 vs. uniprot
Match: A0A835YTB2_9STRA (Ras family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB2_9STRA) HSP 1 Score: 154 bits (388), Expect = 1.280e-38 Identity = 79/175 (45.14%), Postives = 111/175 (63.43%), Query Frame = 2
Query: 413 IYTLKFVLAGSSGVGKTQLARRIISGEFAETSRPTVGLEFGTRSLRCSNHSTIRAQIWDAAGELRFELVKETLFRGAVGVMLVYEISRRSTFDELPERLAYIRGHCHESIAIVMVGNKSDMSS-KQREVSMVEGMRFARKHELDFFETSALENTNVEETFRQMVMSVARYLPQEK 934
+YTLKFVL G S VGK+QL R F + TVG+EF TR L + ++AQ+WD AG+ RF + + +RGAVG +LVY+++ R++F+ L IR + H +IA+ +VGNKSD QR V+ EG+ FA + +DF ETSA NVE FR+++M+VAR LP+ K
Sbjct: 17 VYTLKFVLVGDSSVGKSQLVSRFSKNLFLPETSSTVGMEFATRELAYYGGARLKAQVWDTAGQERFHSLTQAYYRGAVGALLVYDVTSRASFEGARRWLRQIRDNAHRNIAVSLVGNKSDRGGGAQRAVTTAEGVAFAEANGMDFVETSAATGENVETAFRRLIMAVARLLPEGK 191
BLAST of mRNA_H-paniculata_contig858.16545.1 vs. uniprot
Match: A0A662XBK5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBK5_9STRA) HSP 1 Score: 158 bits (399), Expect = 1.950e-38 Identity = 83/203 (40.89%), Postives = 126/203 (62.07%), Query Frame = 2
Query: 398 LGEEKIYTLKFVLAGSSGVGKTQLARRIISGEFAETSRPTVGLEFGTRSLRCSNHSTIRAQIWDAAGELRFELVKETLFRGAVGVMLVYEISRRSTFDELPERLAYIRGHCHESIAIVMVGNKSDMSS--KQREVSMVEGMRFARKHELDFFETSALENTNVEETFRQMVMSVARYLPQEKPALASNCHDEVYLLPKGWIRVV 1000
LG + Y LK VL G SGVGK+ L R ++ S TVG EF T+++R + ++AQIWD AG+ RF+ + +R AVG M+VY+I+ RS+F+ + LA + H HE++ +++VGNK D++ + REVS +E RFA KH ++F ETSAL++TNV + F+++++ V R L P ++ LP GW RV+
Sbjct: 112 LGGGQEYILKVVLIGDSGVGKSNLVMRFTKNKYLPQSVQTVGFEFATKTIRVGDRR-LKAQIWDTAGQERFQSLTAAYYRNAVGAMIVYDITNRSSFEHVTGWLAQVHEHSHENLVLILVGNKCDLAHLPQTREVSTLEAARFAAKHSMEFLETSALDSTNVVDAFKKLIVPVGRLLSPTDP-------QKIARLPTGWRRVL 306
BLAST of mRNA_H-paniculata_contig858.16545.1 vs. uniprot
Match: D0NW41_PHYIT (Rab11 family GTPase, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NW41_PHYIT) HSP 1 Score: 157 bits (397), Expect = 2.120e-38 Identity = 89/227 (39.21%), Postives = 133/227 (58.59%), Query Frame = 2
Query: 335 TGQLEATSIAGVAAEEVMF---PPLGEEKIYTLKFVLAGSSGVGKTQLARRIISGEFAETSRPTVGLEFGTRSLRCSNHSTIRAQIWDAAGELRFELVKETLFRGAVGVMLVYEISRRSTFDELPERLAYIRGHCHESIAIVMVGNKSDMSS--KQREVSMVEGMRFARKHELDFFETSALENTNVEETFRQMVMSVARYLPQEKPALASNCHDEVYLLPKGWIRVV 1000
T Q T + A+ F PP+ E LK VL G SGVGK+ L R ++ S TVG EF T+++R + +RAQIWD AG+ RF+ + +R AVG M+VY+I+ RS+F+ + LA + H HES+ +++VGNK D++ + R+VS +E RFA KH ++F ETSAL+ TNV + F+++++ V R L +P ++ LP GW RV+
Sbjct: 68 TSQASVTGSSLSASNSPRFSALPPITES---ILKVVLIGDSGVGKSNLVMRFTKNKYMPHSVQTVGFEFATKTIRVGDRR-LRAQIWDTAGQERFQSLTAAYYRNAVGAMIVYDITNRSSFEHVTGWLAQVHEHSHESLVLILVGNKCDLAHLPESRQVSTLEAARFAAKHSMEFLETSALDATNVVDAFKKLIVPVGRLLSPTEPK-------KIVRLPPGWRRVL 283
BLAST of mRNA_H-paniculata_contig858.16545.1 vs. uniprot
Match: M4BM76_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BM76_HYAAE) HSP 1 Score: 157 bits (396), Expect = 4.490e-38 Identity = 83/195 (42.56%), Postives = 121/195 (62.05%), Query Frame = 2
Query: 422 LKFVLAGSSGVGKTQLARRIISGEFAETSRPTVGLEFGTRSLRCSNHSTIRAQIWDAAGELRFELVKETLFRGAVGVMLVYEISRRSTFDELPERLAYIRGHCHESIAIVMVGNKSDMSS--KQREVSMVEGMRFARKHELDFFETSALENTNVEETFRQMVMSVARYLPQEKPALASNCHDEVYLLPKGWIRVV 1000
LK VL G SGVGK+ L RR ++ TVG EF T+++R + ++AQIWD AG RF+ + +R AVG M+VY+I+ RS+F+ + LA + H HES+ +V+VGNK D++ + REVS +E RFA KH ++F ETSAL+ TNV + F++M++ V R L +P ++ LP GW RV+
Sbjct: 116 LKVVLIGDSGVGKSNLVRRFTKNQYKPQCVQTVGFEFATKTIRVGDRR-LKAQIWDTAGRERFQSLTAAYYRNAVGAMIVYDITSRSSFEHVTGWLAQVHEHAHESLVLVLVGNKCDLAHLLESREVSTLEAARFAAKHSMEFLETSALDATNVVDAFKRMIVPVGRLLSPTEPL-------QIARLPPGWRRVL 302
BLAST of mRNA_H-paniculata_contig858.16545.1 vs. uniprot
Match: W2HPP4_PHYPR (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2HPP4_PHYPR) HSP 1 Score: 156 bits (394), Expect = 5.200e-38 Identity = 82/195 (42.05%), Postives = 122/195 (62.56%), Query Frame = 2
Query: 422 LKFVLAGSSGVGKTQLARRIISGEFAETSRPTVGLEFGTRSLRCSNHSTIRAQIWDAAGELRFELVKETLFRGAVGVMLVYEISRRSTFDELPERLAYIRGHCHESIAIVMVGNKSDMSS--KQREVSMVEGMRFARKHELDFFETSALENTNVEETFRQMVMSVARYLPQEKPALASNCHDEVYLLPKGWIRVV 1000
LK VL G SGVGK+ L R ++ S TVG EF T+++R + +RAQIWD AG+ RF+ + +R AVG M+VY+I+ RS+F+ + LA + H HES+ +++VGNK D++ + REVS +E RFA KH ++F ETSAL+ TNV + F+++++ V R L +P ++ LP GW RV+
Sbjct: 95 LKVVLIGDSGVGKSNLVMRFTKNKYMPQSVQTVGFEFATKTIRVGDRR-LRAQIWDTAGQERFQSLTAAYYRNAVGAMIVYDITNRSSFEHVTGWLAQVHEHSHESLVLILVGNKCDLAHLPESREVSTLEAARFAAKHSMEFLETSALDATNVVDAFKKLIVPVGRLLSPTEPK-------KIARLPPGWRRVL 281
BLAST of mRNA_H-paniculata_contig858.16545.1 vs. uniprot
Match: G4ZAW0_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZAW0_PHYSP) HSP 1 Score: 155 bits (393), Expect = 6.450e-38 Identity = 81/195 (41.54%), Postives = 123/195 (63.08%), Query Frame = 2
Query: 422 LKFVLAGSSGVGKTQLARRIISGEFAETSRPTVGLEFGTRSLRCSNHSTIRAQIWDAAGELRFELVKETLFRGAVGVMLVYEISRRSTFDELPERLAYIRGHCHESIAIVMVGNKSDMSS--KQREVSMVEGMRFARKHELDFFETSALENTNVEETFRQMVMSVARYLPQEKPALASNCHDEVYLLPKGWIRVV 1000
LK VL G SGVGK+ L R ++ S TVG EF T+++R + ++AQIWD AG+ RF+ + +R AVG M+VY+I+ RS+F+ + LA + H HES+ +++VGNK D++ + REVS +E RFA KH ++F ETSAL++TNV + F+++++ V R L +P ++ LP GW RV+
Sbjct: 100 LKVVLIGDSGVGKSNLVMRFTKNKYMPHSVQTVGFEFATKTIRVGDRR-LKAQIWDTAGQERFQSLTAAYYRNAVGAMIVYDITNRSSFEHVTGWLAQVHEHSHESLVLILVGNKCDLAHLPESREVSTLEAARFAAKHSMEFLETSALDSTNVVDAFKKLIVPVGRLLSPTEPK-------KIARLPTGWRRVL 286 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig858.16545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig858.16545.1 >prot_H-paniculata_contig858.16545.1 ID=prot_H-paniculata_contig858.16545.1|Name=mRNA_H-paniculata_contig858.16545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=488bp MTGQLEATSIAGVAAEEVMFPPLGEEKIYTLKFVLAGSSGVGKTQLARRIback to top mRNA from alignment at H-paniculata_contig858:16294..26751- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig858.16545.1 ID=mRNA_H-paniculata_contig858.16545.1|Name=mRNA_H-paniculata_contig858.16545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10458bp|location=Sequence derived from alignment at H-paniculata_contig858:16294..26751- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig858:16294..26751- >mRNA_H-paniculata_contig858.16545.1 ID=mRNA_H-paniculata_contig858.16545.1|Name=mRNA_H-paniculata_contig858.16545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2928bp|location=Sequence derived from alignment at H-paniculata_contig858:16294..26751- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |