mRNA_H-paniculata_contig8577.16544.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8577.16544.1
Unique NamemRNA_H-paniculata_contig8577.16544.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8577.16544.1 vs. uniprot
Match: D8LN24_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN24_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 5.160e-11
Identity = 58/107 (54.21%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:    1 RYCYDDGHPEWE-TDTGSAIDQGSLAG--FPLPKDA------SSRFSAGPRSQASFAAPSVAASGLSAQSSVITAHRSITSRTNFPPPGGLAGSPPFGPGGRPAAGA 294
            +Y  DDG  +W  TD   A   GS+ G  FPL K        SSRFSAGPRSQASFAA SVAASG S QSSV     S  SR+NFPP GG+  SPP+  GG    GA
Sbjct:  151 KYYEDDGTSDWGGTDLTGAAMGGSILGPEFPLRKGMVGGGGPSSRFSAGPRSQASFAANSVAASGRSVQSSVTIGGAS--SRSNFPPRGGI--SPPYSLGGAGGGGA 253
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BLAST of mRNA_H-paniculata_contig8577.16544.1 vs. uniprot
Match: A0A6H5KYX6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX6_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.430e-9
Identity = 58/111 (52.25%), Postives = 66/111 (59.46%), Query Frame = 1 
Query:   10 YDDGH-PEWE-TDTGSAIDQGSLAG--FPLPKDA------SSRFSAGPRSQASFAAPSVAASGLSAQSSVITAHRSITSRTNFPPPGGLAGSPPFGPGGRPAAGAGITAIG 312
            Y+DG   +W  TD   A   GS+ G  FPL K        SSRFSAGPRSQASFAA SVAASG S QSSV T   S  SR+NFPP GG   SPP+  GG  +   G+  +G
Sbjct:  187 YEDGDMSDWGGTDLTGAAMGGSILGPEFPLRKGMVGGGGPSSRFSAGPRSQASFAANSVAASGRSIQSSVTTGGAS--SRSNFPPRGGT--SPPYSLGGGASPLRGLARVG 293
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8577.16544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN24_ECTSI5.160e-1154.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KYX6_9PHAE4.430e-952.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8577contigH-paniculata_contig8577:3615..5121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931077.758593-CDS-H-paniculata_contig8577:3614..37971622931077.758593-CDS-H-paniculata_contig8577:3614..3797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8577 3615..3797 -
1691481579.6041527-CDS-H-paniculata_contig8577:3614..37971691481579.6041527-CDS-H-paniculata_contig8577:3614..3797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8577 3615..3797 -
1622931077.7718797-CDS-H-paniculata_contig8577:4989..51211622931077.7718797-CDS-H-paniculata_contig8577:4989..5121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8577 4990..5121 -
1691481579.6146305-CDS-H-paniculata_contig8577:4989..51211691481579.6146305-CDS-H-paniculata_contig8577:4989..5121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8577 4990..5121 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8577.16544.1prot_H-paniculata_contig8577.16544.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8577 3615..5121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8577.16544.1

>prot_H-paniculata_contig8577.16544.1 ID=prot_H-paniculata_contig8577.16544.1|Name=mRNA_H-paniculata_contig8577.16544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
RYCYDDGHPEWETDTGSAIDQGSLAGFPLPKDASSRFSAGPRSQASFAAP
SVAASGLSAQSSVITAHRSITSRTNFPPPGGLAGSPPFGPGGRPAAGAGI
TAIGG
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mRNA from alignment at H-paniculata_contig8577:3615..5121-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8577.16544.1 ID=mRNA_H-paniculata_contig8577.16544.1|Name=mRNA_H-paniculata_contig8577.16544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1507bp|location=Sequence derived from alignment at H-paniculata_contig8577:3615..5121- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTACTGTTACGACGACGGTCACCCCGAGTGGGAAACGGACACAGGAAG
CGCGATAGATCAGGGGTCTCTGGCGGGGTTCCCCCTACCCAAAGATGCCT
CGTCTCGATTCTCCGCCGGTCCGCGCTCGCAGGTATGTATGTATACATCC
GATGAAATATTAGGATAGTGGTCGTTTCGGAACAGAAACGATTCACCATA
CTTGTTCCAAGTGTTTGAGTGAGCGGGAATTTTGGAGTTTTCAAGCAAAC
TAACCTTTCCATACTACGATCAAGTGTCTTTCATAGATGAACGCCCAAAA
AGTTGGGTGATGTCCCGGTCACCTCATGAAACATGGAGGGGCACAAGGCA
GGGGTCCATGGAGCCTTTACGCACAAGGCAAAGAGGTGCATGGCGCTGAA
GAAGGCGGGGCTGCTCACCCATAATTCAGGGGGGATGAAAGGCAGCGGCC
AGGGCAGTAGGCCAAGGCAGTGGATCTGAATCGAAGCAGCTGGATATTAA
GTACTGAATGTTTTTGAACTCTACGAGTAGTTCGAAAACGACTTGACCAC
GATTTCGTGAAAGTAGATGGTGATCAAGATGATTGTGGTGGTGGTGGTGA
TGATCAAAATTGCTGAGAAAAGGAATGAACCTCTGTATTAGATAACGTAG
CAAATCGAGAAAACATTATAACTCACCCAGATAGTGGTCTGTTCGTTTCT
TACTTGATGTTTTAAAAAATAAAGATGCTACCTTGGATTATTACAGTGGT
TGTGTTGTCTGATCTCTCTCGTTGCCGACTTCTCTATCGTCTCACACTTC
TGTCTTTGCTGCTTGTACACGCCTACGTCCTCCCTCCCCCACTCTCTTCT
TACTTATCTACGGACCCAGCTTCCTCTATTCATGTCTACCTCTCGACGTG
TATAGCGTGTTGTGGTTTTTGAATTTGAACTGTAACTTGCCAACTCTTGT
ATATAGAATCCAAATTCTATTTTTCTTATTCCTGTAAGATGACCTCTTAG
ACCTGGTGCTGGAAATGTTGAAATGGAGGCGTGATTGCCTAAAAATCACA
AAAACCATTTATCATTTTCAACGTCATGAGCTGTGCGGTCTTACGGGCGG
AAATTGAAAATTGAGAGGTTTGCAGGCGTATCCGAGGGTGTTTGTCTCTG
CTTGTGGGTGCGGCATGTGGGTACTGTGTTGTCTTGTTCCGAGCTGTACT
GTTCCATGACAACCCCACTTGATTTATTGTTGCTGATGAGTGTACACAAC
TAAATGTTGAGGTCTGCTGTATAACATAACGTGAACATGGCGTCCATCCC
CCCTCCCCACCCCTCCACCACCAGGCCTCCTTTGCAGCCCCTTCCGTGGC
AGCATCTGGCCTCTCCGCGCAGTCCTCCGTCATCACGGCCCATCGCTCCA
TTACGTCCCGCACCAACTTCCCTCCCCCCGGCGGCTTAGCCGGCAGCCCG
CCGTTCGGGCCCGGCGGCCGGCCTGCGGCTGGTGCAGGCATCACCGCCAT
CGGTGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig8577:3615..5121-

>mRNA_H-paniculata_contig8577.16544.1 ID=mRNA_H-paniculata_contig8577.16544.1|Name=mRNA_H-paniculata_contig8577.16544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig8577:3615..5121- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTACTGTTACGACGACGGTCACCCCGAGTGGGAAACGGACACAGGAAG
CGCGATAGATCAGGGGTCTCTGGCGGGGTTCCCCCTACCCAAAGATGCCT
CGTCTCGATTCTCCGCCGGTCCGCGCTCGCAGAGGTACTGTTACGACGAC
GGTCACCCCGAGTGGGAAACGGACACAGGAAGCGCGATAGATCAGGGGTC
TCTGGCGGGGTTCCCCCTACCCAAAGATGCCTCGTCTCGATTCTCCGCCG
GTCCGCGCTCGCAGGCCTCCTTTGCAGCCCCTTCCGTGGCAGCATCTGGC
CTCTCCGCGCAGTCCTCCGTCATCACGGCCCATCGCTCCATTACGTCCCG
CACCAACTTCCCTCCCCCCGGCGGCTTAGCCGGCAGCCCGCCGTTCGGGC
CCGGCGGCCGGCCTGCGGCTGGTGCAGGCATCACCGCCATCGGTGGCGCC
TCCTTTGCAGCCCCTTCCGTGGCAGCATCTGGCCTCTCCGCGCAGTCCTC
CGTCATCACGGCCCATCGCTCCATTACGTCCCGCACCAACTTCCCTCCCC
CCGGCGGCTTAGCCGGCAGCCCGCCGTTCGGGCCCGGCGGCCGGCCTGCG
GCTGGTGCAGGCATCACCGCCATCGGTGGC
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