mRNA_H-paniculata_contig8573.16543.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8573.16543.1
Unique NamemRNA_H-paniculata_contig8573.16543.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8573.16543.1 vs. uniprot
Match: A0A545VCQ6_9HYPO (Ankyrin repeat domain-containing protein n=1 Tax=Cordyceps javanica TaxID=43265 RepID=A0A545VCQ6_9HYPO)

HSP 1 Score: 58.2 bits (139), Expect = 1.080e-5
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 2 
Query:  212 RTCLHYVASSARTKAGMFIRMLVLGSRDLNPDLEIDARDVQNRTPLHMAACSGNIEVIRVLLELGASL 415
            RT LHY A  + T   + +  LVLG     P+++ID RD Q RTPL  A   GNI+ +R+LL+LGA++
Sbjct:  148 RTALHYAAERSNT---VILNRLVLG-----PEVDIDVRDFQGRTPLFTAVQRGNIDTVRILLQLGANV 207
[Close]
BLAST of mRNA_H-paniculata_contig8573.16543.1 vs. uniprot
Match: UPI000C71C6EC (ankyrin-1-like n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI000C71C6EC)

HSP 1 Score: 57.8 bits (138), Expect = 7.460e-5
Identity = 65/287 (22.65%), Postives = 103/287 (35.89%), Query Frame = 2 
Query:  215 TCLHYVASSARTKAGM------FIRMLVLGSRDLNPDLEIDARDVQNRTPLHMAACSGNIEVIRVLLELGA--SLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNASGSSRSRP----IALHIAAGCGHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDAHQYEKIELNTVLHVVAER--EDLFCPRIFSLLVER-EGLDIEQTNHCERTALHLACLEHNEPMIDALMKAGADENAVAGNMGWPAHHACYRVFEEFDAMERVENW 1030
            TCLH + S+                ML     + N  +E+DARD + RT LH+A  +GNI ++ +LL  GA  +L                                 N S    +R      ALH+A    H+                                              D +   + +  TVLH + E   +DL   R+F +  E+ E + ++  +   +T LH+A  + N  MI+ LM+ GA  N +  N   P H  C R  ++ D ++ +  W
Sbjct:  241 TCLHVICSNDXXXXXXXXXXVDMANMLFAICDENNQTVEVDARDNEGRTALHVAVFNGNINLVEILLSRGALSNLPDGKGFTPLHVLCLRGDDDVDLARRFFEMGEKFNNSVRIDARDEYGNTALHLAIHKDHVNLIEFLLRKG-----------------------------------ADPNSLNE-DGETVLHRICEANLDDLSIERLFKICDEKHESMQVDAQDKMSKTPLHVAATKGNINMIEILMRRGARPNLIDENGFTPLHFICQREDDDVDLVKMLXPW 491
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8573.16543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A545VCQ6_9HYPO1.080e-545.59Ankyrin repeat domain-containing protein n=1 Tax=C... [more]
UPI000C71C6EC7.460e-522.65ankyrin-1-like n=1 Tax=Trichogramma pretiosum TaxI... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8573contigH-paniculata_contig8573:1688..10202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2697
Cds size1488
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8573.16543.1prot_H-paniculata_contig8573.16543.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8573 1797..9102 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931077.6665244-UTR-H-paniculata_contig8573:1687..17961622931077.6665244-UTR-H-paniculata_contig8573:1687..1796Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8573 1688..1796 +
1691481579.5571325-UTR-H-paniculata_contig8573:1687..17961691481579.5571325-UTR-H-paniculata_contig8573:1687..1796Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8573 1688..1796 +
1622931077.7147777-UTR-H-paniculata_contig8573:9102..102021622931077.7147777-UTR-H-paniculata_contig8573:9102..10202Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8573 9103..10202 +
1691481579.5923553-UTR-H-paniculata_contig8573:9102..102021691481579.5923553-UTR-H-paniculata_contig8573:9102..10202Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8573 9103..10202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931077.683467-CDS-H-paniculata_contig8573:1796..18231622931077.683467-CDS-H-paniculata_contig8573:1796..1823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8573 1797..1823 +
1691481579.5685625-CDS-H-paniculata_contig8573:1796..18231691481579.5685625-CDS-H-paniculata_contig8573:1796..1823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8573 1797..1823 +
1622931077.6983886-CDS-H-paniculata_contig8573:7641..91021622931077.6983886-CDS-H-paniculata_contig8573:7641..9102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8573 7642..9102 +
1691481579.579678-CDS-H-paniculata_contig8573:7641..91021691481579.579678-CDS-H-paniculata_contig8573:7641..9102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8573 7642..9102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8573.16543.1

>prot_H-paniculata_contig8573.16543.1 ID=prot_H-paniculata_contig8573.16543.1|Name=mRNA_H-paniculata_contig8573.16543.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=496bp
MDSQLPSQLEIGRRRGDALIEATTEFILGPHPEARTCLHYVASSARTKAG
MFIRMLVLGSRDLNPDLEIDARDVQNRTPLHMAACSGNIEVIRVLLELGA
SLDAVSARGMTPLHYAVENGSLAAVVAILDAGADVNASGSSRSRPIALHI
AAGCGHIEIMEELLARGADPNAQIDGGQSPLFFAIEAPDRVAEAVEILLN
AGTDAHQYEKIELNTVLHVVAEREDLFCPRIFSLLVEREGLDIEQTNHCE
RTALHLACLEHNEPMIDALMKAGADENAVAGNMGWPAHHACYRVFEEFDA
MERVENWPQGTPEEERPALEAKIIVTRRIHHRLSQGPQDRENIRATKAWR
KRGWLVVLRIRRRGQISAADTAVAASSQPAWFDSATVRRRGSSPLAVLNS
GQGLKMGNSGRSPVSVTDKALAELPQAQLDKISLGNEPTDTREVCAARDE
GVAATETDDSNDRDDGGNALFGVVNMLTGSRWEHEDLFREIVMFI*
back to top

mRNA from alignment at H-paniculata_contig8573:1688..10202+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8573.16543.1 ID=mRNA_H-paniculata_contig8573.16543.1|Name=mRNA_H-paniculata_contig8573.16543.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8515bp|location=Sequence derived from alignment at H-paniculata_contig8573:1688..10202+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCCAAGGTACACGACCTACAGACTGTAGATACATCCGAAGCACCAGA
CGAAGAGTTTTGTCACCGCCTCATCTTGTTTTGGTGTTGAATGTGCACAC
TGCCACGACATGGACTCTCAACTCCCGAGCCAGTTGGTGAGACTAGATGT
TTTGAAGGGTGTCGATGCGGTGGACTGGCCTTCTGTTACACATCCTGGAT
CATTGTAGTCGTTCATTTGGGAATGCTGCCGGACTTTGCGTGGGTACCTT
GTGATGTGGACATGTTGAATGTAACGGGAAGCTAGGTTGCAAGGATTCAG
GGATCCCGTTTTACTCGCAGAGAATCGCGATACTATCTGTAGACATGTAG
AGGCCTGTGGTGGATATATGAACAAGGGATGGACAGAAGGTCTCAGAGAA
TGCAGGAAGTTAAGTAACCGCTCCCCCCCGCCCTATCCACCCTCCTGGAT
GCGCTTAACGCACTTTTCGGTGTGTAGGCAAGCTGACAGCCTCTCTGCAT
CGTATGCAAGTGCTAATATTTGTTAAGGTGTCGCAATAACCACAGAGTAA
ATCAGTTATTGTGACACCTGTCACACTACATGTTGAGATGCGCAGGTACG
CTAACCACTACGTTGATCAATTGTTATTGCGTATTTGTGTGACACGCGCG
GCAGCGCAAGGCAGCCAGTGTTGCAACACCGCAGGGCACCAGTAGAATTC
ATCGCTGGATCGCGACCTCTCCTATGCTGCACAGTTTCGCCACAAGTATG
TATAACAACCCATTTCCAATAGCGAGATATGTTGGTCTTGCTGCTTGGAT
TTCATATTTCTTGATTCACCTGATCATTTTTATGACTTCGCAGACCCGTA
CGTCCAAAAGTGGATATAAAACTGACTCTGGAGAAGTTTGTCGATAGACG
CTCATCTCTTTGCCAGCGCATCTGACAGTAGAATATAAAATGGGAGTATA
GAGAAGCTCTAGCATGAACCATTGTGTTCTGTCACAAATATGAGCTGGTT
TTACCAAGAACCATGAGATTCAAGACTTCTTTGCCAAGATTTTGCCCCTC
GGTTTTCAGGGCTCTTCTAAACATTGCGTTTTTCTCCGTTTTCCCCTGTT
TTTCTTTGCATTTTCTCGAATGAATCGAAATTCAAAAATGGAAAAGGAAC
ATTTCTGCCTTCAGTGTTCCTCAACCCTCTGTCGAGTTTTTTTCGATTCT
TCCGACATAATCTCAGCGTGTTATCGGCAGAACGGGAAAAAAAGAGGGAA
AAAATACCTCGAACGGTACGAAACAGAAAAAGTCGATTTGCGTACGACAT
TAGGGTGTTTGCGCAAAACCAATTTCTTTTCAATTTTCGTTTCTCTGTTC
GCCCAAAGCAACCAGTTTTACCGACAGAGCACATTTTCCTTTTTCTTTCA
ACAAATCTTGGCGCGTTCTAGAATCCTCGGAGCGAGAAACGAAATATGAA
GAGGAATTTTGATTGTGTTGACCAAAGTTCGGAACACTTTTGTAGCGGGC
CAATACTACCCGACATGCACCCGATGCTTCGCAATTACAAATCAGTTGAA
CGGCAGCCTACAGTTCTACGGCAGTCAGGGCCATTCTGAACGTGGATGTT
TCCTTCCCGTTTTTTTCTCTTTTCTCTTTCCTCTGTTTTCCCCTTTTCCC
GATAACACGCTGAGATCGTATCGGAAGAATCGGAAAAAACTTTAAATGAG
GTTAAGAAACGTTGCAGGTAAATATGTCACACTTTCGTTTCTGAAATTAA
ACAAACTGGAGGAGAGGAAAAATCTCCGGAAAAAGAAAAAAAAGAAAACG
GAGAAAAGGCGGGGAAAACACTACCGTTTAGAACGGCCCAAAGCTCAGGC
ACGAGGAGATCGCTGGTTCTCAGCGAACATCGTCTTCAGTCCCTCCAGTT
TCAGCTGAGGAAAGGATCACTGCCACTGCGAATGAAAAAATCTAGGGTGG
GTTGTGAGGTGTAGTGCAGGTGTGGTTTTCTTTGTCTTTGGTGTGTGCTC
CAACTACAAATATGCGTGTAAAGGCCGTTGACTATTACACTGAAAACACC
AATTTCATAATTAGTCTGTATTTTGTACCACACCATAATTTGTCATTTTG
AGAGATGTACAGCCGAGCCATGCATCAGCACACCACTCTCTCTCTCAGTG
AACGTCGCCGTTCAGCCCTTCCAATTTCGGCTGGTGTAAGGAAAGCAGAC
TCGAACTACGCACGAAGAACATCTCAGTTGGGAGCTGTAGCAAAGCCATG
GTTCTTGTTGTCTGTGGAGGATATGTGGAGTGTACTTATTCCAAATATAT
AATTGGGTCTAAGTGCTATCTCTCTGGCGGTGTAGCTGCTCAAGGTAAAA
ATCGTGTTGGAACCACACCCCATTTTTATGCAAACAAGTAGCAAGTTGTA
AAAAGTTGTAATTTTGGTCAAAGTCGAAAGGTGTGCGACACACCAGAGAC
ACCGCTCTTTCTCAGCAACGAGTATCGCCCCTCAGCTCTTTCAATGCCAG
CTGGACTGAAGACAGCAGACTGACACTGTGCGCGGAAACAGTAGTCTGCC
TTACTGGTTTCTCCACAAAGTTATCTTGTAATTATGTGTGCCAAATGCAA
AAAAAAAAGAAGAGAGGATCATGGAACGCCCTTGGGCGGTGATCGACGTT
GTCGCCTTTTTAATTTTGTACAAGGCGTACGGAAACGAGAAGTCATTTGG
GGGGTCCCTGAGCGATAGCAAAATCAATTTACAACGGGATGCAAACGACA
GCGCCTGGCGCCTGGCGCCTGGCACCCATTGCTCACGCACGACGTCCTTC
GTCGACACCATCTACGAGCAACAGGCCTGGGGCATGAATTACAGTTATGT
ATTGGTTATCATTTTTTGGTATTTTTTCGCGAAACATTCAACCGCCCCGG
GGCGTTCTCGCAACATTCGACCACCCCGGGGCTTTATGACCGCCCAGGGA
CTTCTTTTTTGTTGGCGTGGCTTTGATACTACACCCCGAGGCGATTGGTT
TTTTGGGGCTCCTTTCGACAATCCACTGGGTGTTATGGCAACCGTGGCGT
TCTGAGAACCCTCTGCGGGTTTTTCAACGTCACGTCTAACGTTTTAGCCC
GCCCTCACGAGGCTAATCTCAGGGGCTCATCATCAATGCGACCTCCTACT
TCACATTTTTGTCGCGAGCACCGCCACAATACTATGTTGTAGGCGACCTG
AGAAGAAGGCCAACGGTTGTTACATGACTTAACTCGTCGTTGTTCCAAGG
TTATGCCCAAGACAAGGTGTCCGTCTAATCCCCACTAGAGCTCTAGTAGG
CCAAATTTTTCTGGTTTCATTTTTTTCGCTTTCTCCCAGATGCTTTTTCC
GAATGATGGGGAGAAAAACGCGATTGTTCGCGTTGAAAAAAAATAATTCT
GCATCAACACATTTGCTTCTTTGTCTGTGGGGGGGGCTATGCTTACATTA
CGATTTGGTTATTCTCCAGCTTCCGGGAAAATCCAAATATCTCGATACTA
GGAAATATTAAATACCAGAATTTACTAGTGAAAAGTTGTTCGTGTTGAAA
ATACGAACAATGTGAATGGGTTGTTTTGTTGGGTTTATGAAACATGTAAA
ACCACCGGAGAAAGGCTCGGTGAAGGAAGGAATCTTACGCTTTTGAGTTG
AATCAGGGTGTAATAATCCATTATTCTTCGTATGTCAATTTTCAAAAGAA
CGAGTTAGACGTATGTGCCGTCCAAAGGCGCGGTGATGTCCACTAAACTC
TAAGCGCTGCTTCTTAATCCTATAAACTCTGTCCCGCGGGAAAACGAGAG
CTACGCTCTCCCGCTGACGCCGCACTACCGCCCTCCCCCCTCCGACATGG
CTGTCCAGCGATCCCCCCGAATCTGGTGACCCCTCAGATAGCCCTTGTGA
CTCAGTATCATGAATAGCAATTGGTATCCCGCGAAGCGCTGGATAATAAC
ACGGTACATATCTCTTCCCCCCCCCCTTATTGATTTAATTCTGCTGATAA
GTGCACACACCTGCAGATTAAAGTCAGTTGCACACGATCAACATGGGTAT
AATGGATATCCCCCGATGTAAAATTTCCCAGATCGGCACAAAATTCTGTC
CCCCAAGGACGCCCGGTCAAAACACGAGTACACCTCCGCCACGTGCCTCC
CTCTCTACTTCCCGTACGCCTCAGAAGCCCTCAACGCACCGTTGTCTGGG
GATGTGGTGGACATCCTGCAGAGCATGAAACCCCTCGGCATGCATATCAA
ATTTTCAAATGGATTAGGGCTATTTGTAGAATTTGCTACCCCACACGTTG
CGGTGGGGATGCCCATGATTCGAGGTGAACCACCTCTAATTCTAACCTCG
TGTAGGTGTGGTCACGCGTCGCCAATCTGTAGCACACGTGTCCATGCTGT
ATTGCATTGTATTGGTCAACTAGTCTGACCTTATTGTCGGGTCCTTTTTA
GACAACGCCGTCGTACACGACTGCGCCCATCGGGTAGCTGCACGCATATG
AGTTGGATGGTCTCCAACACTGCCGATTCTCTATTCTGCAACCTACTCGC
GAAATCTTCGCGTTCAAACACTTATTTAGGGAGAAGGGGGAGGGGGGGCG
TACTCAAGAAAGCGCATGCTGTAGTTTAACGATCATTGACCTTGCATCTG
TACAATGCCGGGACGGAACATGTCGGGTTTTCGACGGCCAGGCTGCGTTT
CACAGGGTTATACTAGCCATTTTTCATCATCCTTGGGTTGCTACTCCAAC
CTGATTCTGCCACGAGATTTTGGGCTTCCCGGGCGACCAAATGTTGCACA
CAGGCAGGCGTGACTATAGTGCGATTACCGCACGGGACCTTGATAATCGC
GCGCACGTATAACCAACGTCACGCTACACACACCGAATGAATGGCTTCGT
GTCTGATACACCTGCAGTATAAAATGTTCACGTCCTCCTGATGGAGGAGA
GGTCATGACTATTTTCACTCTAGGGCGTTGCCACCACCAGTTTAACAGAG
ACCCTATAGGGTGTGAAACGTTTGACAGAGGTCCACGAGCTCGCAGGATA
TACCATATGAATTCCCCCATGCTATTTTAAAGCAATTTTACGAGTCTATG
CCACAAGAGCCAGCCTCGGCGAGGACAAAGAGGGGGAGGGAACGACGAGT
ATTTGGTAGGTGTCTTCAGGCACGCCAGCACGAATTTGGCATTCGTACCT
ACTATAGAGCACATGTATAATTGATGTTGTGTTTTCGCCCAACAGTAAAT
TCATACATTCGACCCGTGAAACTAACCAAGCGTTTCGTTGAAAATGAGCG
ATTATGCATATGATAGATGCATCACAGTGGCTGCACTAGAGGATATTGTG
ACTGATTGGAACATGTCTCATGGCTGGTTTTGTTGTACTGTACTGTACTG
TACTGTACTGTACTGTACTGTACTGTACTGTACTGTAGTGGATATATAGT
TGAATGTACTGAAATGCTGACCATATCATACCGTATGAACATGAAGTGTA
GACACAACAAAGCCCCCAACAAACTGCAAGTCTACGCCTTGCTACACAAC
AGAAAAAATTAAAACAGGTTAAACGAGCGCGAAGTGTTGATTATTTGAAC
CACCGGCTGAAAACAACACTTCGAAATTAGCAACCAATGCTGCACGAGCC
AGATGTTGACGTTTGCGGCGTTTTTTTCGATTTATTCAATACTCCTATAT
ATTCAGGTATGTACACTTATTGGCAGGACGACCTTATGGCGTGCTTTGCT
ATTTTTAGACGATGGTTCAACTAGTAGTGCGACTCAATGCATCACACAAA
CCACTTGACTAAAACAGCAGCTGCGATAGAGATCCGATAAATTGACTAGC
ACCTGTGCCAACAGTGTATTTACGCTCGATGCTTCTTCCGACACTCGATG
CTGCCGTTCCACCCTGTTTGTATTTGTGATTATATTACGTGACGTGATGC
ACAGGAAATAGGACGCCGCCGCGGCGATGCTCTTATAGAGGCTACTACTG
AGTTCATCCTAGGTCCTCACCCGGAAGCCAGGACCTGCCTTCATTACGTG
GCGAGTAGTGCTCGCACGAAAGCGGGCATGTTTATTAGAATGCTAGTGCT
TGGATCGCGTGATTTGAACCCGGACCTTGAGATCGACGCCCGCGACGTCC
AGAATCGCACGCCCCTACATATGGCAGCGTGCTCCGGTAACATCGAAGTA
ATTCGCGTGCTGCTGGAACTCGGGGCAAGCTTGGATGCCGTGAGCGCTCG
CGGTATGACCCCCCTCCACTACGCCGTAGAGAATGGAAGCCTCGCCGCGG
TGGTCGCTATACTCGACGCAGGTGCAGACGTCAACGCGTCCGGTAGTTCT
AGATCCCGCCCCATCGCCCTGCATATCGCAGCTGGCTGCGGACACATCGA
AATAATGGAGGAGCTGCTCGCCCGGGGCGCGGATCCAAACGCGCAGATCG
ACGGAGGCCAAAGCCCGTTGTTCTTCGCGATCGAGGCGCCAGATCGCGTG
GCAGAAGCCGTGGAGATCCTGCTCAATGCCGGCACGGACGCCCATCAGTA
TGAAAAAATAGAGCTAAACACCGTGTTGCACGTTGTTGCGGAGAGGGAGG
ACCTCTTTTGCCCTCGCATATTTTCGTTGCTGGTGGAACGGGAAGGTTTG
GACATAGAGCAGACGAACCACTGCGAGCGGACGGCGCTGCATCTGGCCTG
TCTCGAGCACAACGAGCCCATGATAGACGCCTTGATGAAAGCAGGGGCGG
ACGAAAATGCGGTAGCAGGGAACATGGGGTGGCCGGCCCACCATGCCTGT
TATCGCGTCTTCGAAGAGTTTGACGCGATGGAACGCGTGGAAAACTGGCC
GCAAGGGACGCCCGAAGAGGAGAGACCCGCGCTTGAGGCTAAAATCATAG
TCACACGGCGCATCCACCACCGATTGTCTCAGGGTCCGCAGGATAGGGAG
AATATCAGGGCAACCAAGGCGTGGCGCAAAAGGGGCTGGCTCGTAGTCCT
GAGAATTCGCCGGCGCGGACAGATCTCTGCTGCGGACACTGCTGTTGCTG
CAAGCTCGCAACCAGCGTGGTTTGATTCTGCTACGGTGAGGCGGCGAGGG
AGTAGTCCACTGGCCGTTCTTAATAGCGGACAAGGATTGAAGATGGGCAA
CAGTGGACGATCCCCCGTATCAGTCACCGATAAAGCGTTGGCAGAACTCC
CACAGGCGCAACTGGATAAGATAAGCCTGGGGAACGAACCCACCGACACG
AGGGAAGTCTGTGCGGCGAGGGATGAGGGTGTCGCTGCGACTGAAACCGA
CGATAGCAATGATAGAGATGATGGTGGCAACGCCCTGTTTGGTGTCGTTA
ACATGTTGACGGGTAGTAGGTGGGAGCACGAGGACCTGTTTCGAGAAATT
GTCATGTTTATTTAGTTCGCCATTTCCGTTCAGTGTTTTTGTTCGCTGTA
TTTTTAGGGGTTTTCGTGTTGCATTTCCTAAGATTGCTGCCCATGGACAG
TGGGCGGATAGTTTCCTACTCCCTTGGGGTTCGTTCGTGGTGCGTAGGAC
ACATTCCCTAGCGACAAGGGTTTGGGCTTGTTGGAATTTTGCAGGCTAAA
CGAATAGTAAGCAAAGTTGGGATGGTCTACCAAGCTTAGTAGTATGACAA
CGCTTGTAAGCTAGACAGGAATGGGCGATGCTCCGAAACAGCCAGACATT
TCTTGTCCAAACAAAAAGGCGTGTCAGATATAGCCGGCGCTAACAGTATC
ATTTGTTTTGTTTCTTTAGATTCAGGTCCTTGTCGCTTCAACAACCCCTC
GCTCCGCAGGTGGGTGCGGTTGGAACGTGAAGTGACTGTATAGAAGAGTT
GCACCCGCTGGACAAGTACGAAAACTTGGCGTATCCACCACGAAAATTGA
AAACTATTCGCTTAAGTTTCAGAATGAGGGGAGACACAGAATAATGTACC
CGCCCCTGTTCATTCGATTCATGAGTATTATTAGCAGTCGTGGATGGTCC
GGAGCACATAGAACACACGAGCTCATTCTGAAACTCAGGCGAATACTTTT
TAATTTTTGTGGCCAATACGCCAATTATTCGCATTTGTCCGGGGGTGAAG
GGTTGGTTTAAGGAGGGCGCACATCGTCCAACAAGTAGCCGATTTTTCGA
TTGTTTCGTGCTCAGGTGGGGCCTTTGTAGCGCCGAGCTTGCGTGATGCC
GAGATGTTCGCAGGAAGATGATAGGTTGGGTCTTGCGTGTCGGGTTAGCG
TAGACTATGCCGCCTTTCTGTGTAGTTTTTAGTCGCGCTTAAATTTTAAT
TAGAAAGGAAATTGCCAGGGGTTATCAGGGGATCACGGGCCGGAACGAGC
CGCAATGTGATCGTGTTCCAGACACGTCGGGCTCGTTCTGAACAGAGTAT
GGTCCCGTCCCGCAATATTATTTGAAGGGGCTGACTCCCTTCTATTCGTC
CCGCCCGGTGGCACGAGGTTATGGGACCCAGCTTGGTCCCGTGATAACTA
CATTTAACAGCCGAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8573:1688..10202+

>mRNA_H-paniculata_contig8573.16543.1 ID=mRNA_H-paniculata_contig8573.16543.1|Name=mRNA_H-paniculata_contig8573.16543.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2976bp|location=Sequence derived from alignment at H-paniculata_contig8573:1688..10202+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTCTCAACTCCCGAGCCAGTTGATGGACTCTCAACTCCCGAGCCA
GTTGGAAATAGGACGCCGCCGCGGCGATGCTCTTATAGAGGCTACTACTG
AGTTCATCCTAGGTCCTCACCCGGAAGCCAGGACCTGCCTTCATTACGTG
GCGAGTAGTGCTCGCACGAAAGCGGGCATGTTTATTAGAATGCTAGTGCT
TGGATCGCGTGATTTGAACCCGGACCTTGAGATCGACGCCCGCGACGTCC
AGAATCGCACGCCCCTACATATGGCAGCGTGCTCCGGTAACATCGAAGTA
ATTCGCGTGCTGCTGGAACTCGGGGCAAGCTTGGATGCCGTGAGCGCTCG
CGGTATGACCCCCCTCCACTACGCCGTAGAGAATGGAAGCCTCGCCGCGG
TGGTCGCTATACTCGACGCAGGTGCAGACGTCAACGCGTCCGGTAGTTCT
AGATCCCGCCCCATCGCCCTGCATATCGCAGCTGGCTGCGGACACATCGA
AATAATGGAGGAGCTGCTCGCCCGGGGCGCGGATCCAAACGCGCAGATCG
ACGGAGGCCAAAGCCCGTTGTTCTTCGCGATCGAGGCGCCAGATCGCGTG
GCAGAAGCCGTGGAGATCCTGCTCAATGCCGGCACGGACGCCCATCAGTA
TGAAAAAATAGAGCTAAACACCGTGTTGCACGTTGTTGCGGAGAGGGAGG
ACCTCTTTTGCCCTCGCATATTTTCGTTGCTGGTGGAACGGGAAGGTTTG
GACATAGAGCAGACGAACCACTGCGAGCGGACGGCGCTGCATCTGGCCTG
TCTCGAGCACAACGAGCCCATGATAGACGCCTTGATGAAAGCAGGGGCGG
ACGAAAATGCGGTAGCAGGGAACATGGGGTGGCCGGCCCACCATGCCTGT
TATCGCGTCTTCGAAGAGTTTGACGCGATGGAACGCGTGGAAAACTGGCC
GCAAGGGACGCCCGAAGAGGAGAGACCCGCGCTTGAGGCTAAAATCATAG
TCACACGGCGCATCCACCACCGATTGTCTCAGGGTCCGCAGGATAGGGAG
AATATCAGGGCAACCAAGGCGTGGCGCAAAAGGGGCTGGCTCGTAGTCCT
GAGAATTCGCCGGCGCGGACAGATCTCTGCTGCGGACACTGCTGTTGCTG
CAAGCTCGCAACCAGCGTGGTTTGATTCTGCTACGGTGAGGCGGCGAGGG
AGTAGTCCACTGGCCGTTCTTAATAGCGGACAAGGATTGAAGATGGGCAA
CAGTGGACGATCCCCCGTATCAGTCACCGATAAAGCGTTGGCAGAACTCC
CACAGGCGCAACTGGATAAGATAAGCCTGGGGAACGAACCCACCGACACG
AGGGAAGTCTGTGCGGCGAGGGATGAGGGTGTCGCTGCGACTGAAACCGA
CGATAGCAATGATAGAGATGATGGTGGCAACGCCCTGTTTGGTGTCGTTA
ACATGTTGACGGGTAGTAGGTGGGAGCACGAGGACCTGTTTCGAGAAATT
GTCATGTTTATTTAGGAAATAGGACGCCGCCGCGGCGATGCTCTTATAGA
GGCTACTACTGAGTTCATCCTAGGTCCTCACCCGGAAGCCAGGACCTGCC
TTCATTACGTGGCGAGTAGTGCTCGCACGAAAGCGGGCATGTTTATTAGA
ATGCTAGTGCTTGGATCGCGTGATTTGAACCCGGACCTTGAGATCGACGC
CCGCGACGTCCAGAATCGCACGCCCCTACATATGGCAGCGTGCTCCGGTA
ACATCGAAGTAATTCGCGTGCTGCTGGAACTCGGGGCAAGCTTGGATGCC
GTGAGCGCTCGCGGTATGACCCCCCTCCACTACGCCGTAGAGAATGGAAG
CCTCGCCGCGGTGGTCGCTATACTCGACGCAGGTGCAGACGTCAACGCGT
CCGGTAGTTCTAGATCCCGCCCCATCGCCCTGCATATCGCAGCTGGCTGC
GGACACATCGAAATAATGGAGGAGCTGCTCGCCCGGGGCGCGGATCCAAA
CGCGCAGATCGACGGAGGCCAAAGCCCGTTGTTCTTCGCGATCGAGGCGC
CAGATCGCGTGGCAGAAGCCGTGGAGATCCTGCTCAATGCCGGCACGGAC
GCCCATCAGTATGAAAAAATAGAGCTAAACACCGTGTTGCACGTTGTTGC
GGAGAGGGAGGACCTCTTTTGCCCTCGCATATTTTCGTTGCTGGTGGAAC
GGGAAGGTTTGGACATAGAGCAGACGAACCACTGCGAGCGGACGGCGCTG
CATCTGGCCTGTCTCGAGCACAACGAGCCCATGATAGACGCCTTGATGAA
AGCAGGGGCGGACGAAAATGCGGTAGCAGGGAACATGGGGTGGCCGGCCC
ACCATGCCTGTTATCGCGTCTTCGAAGAGTTTGACGCGATGGAACGCGTG
GAAAACTGGCCGCAAGGGACGCCCGAAGAGGAGAGACCCGCGCTTGAGGC
TAAAATCATAGTCACACGGCGCATCCACCACCGATTGTCTCAGGGTCCGC
AGGATAGGGAGAATATCAGGGCAACCAAGGCGTGGCGCAAAAGGGGCTGG
CTCGTAGTCCTGAGAATTCGCCGGCGCGGACAGATCTCTGCTGCGGACAC
TGCTGTTGCTGCAAGCTCGCAACCAGCGTGGTTTGATTCTGCTACGGTGA
GGCGGCGAGGGAGTAGTCCACTGGCCGTTCTTAATAGCGGACAAGGATTG
AAGATGGGCAACAGTGGACGATCCCCCGTATCAGTCACCGATAAAGCGTT
GGCAGAACTCCCACAGGCGCAACTGGATAAGATAAGCCTGGGGAACGAAC
CCACCGACACGAGGGAAGTCTGTGCGGCGAGGGATGAGGGTGTCGCTGCG
ACTGAAACCGACGATAGCAATGATAGAGATGATGGTGGCAACGCCCTGTT
TGGTGTCGTTAACATGTTGACGGGTAGTAGGTGGGAGCACGAGGACCTGT
TTCGAGAAATTGTCATGTTTATTTAG
back to top