mRNA_H-paniculata_contig8572.16541.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8572.16541.1
Unique NamemRNA_H-paniculata_contig8572.16541.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8572.16541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8572contigH-paniculata_contig8572:3607..4326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size694
Cds size693
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931077.566663-CDS-H-paniculata_contig8572:3606..37741622931077.566663-CDS-H-paniculata_contig8572:3606..3774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8572 3607..3774 +
1691481579.504366-CDS-H-paniculata_contig8572:3606..37741691481579.504366-CDS-H-paniculata_contig8572:3606..3774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8572 3607..3774 +
1622931077.5785315-CDS-H-paniculata_contig8572:3801..43261622931077.5785315-CDS-H-paniculata_contig8572:3801..4326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8572 3802..4326 +
1691481579.5158849-CDS-H-paniculata_contig8572:3801..43261691481579.5158849-CDS-H-paniculata_contig8572:3801..4326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8572 3802..4326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8572.16541.1prot_H-paniculata_contig8572.16541.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8572 3607..4326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8572.16541.1

>prot_H-paniculata_contig8572.16541.1 ID=prot_H-paniculata_contig8572.16541.1|Name=mRNA_H-paniculata_contig8572.16541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
TGSSGSGGTSAADRSSFGFGASGRTVPQDTGVSSSAVVGLSRMRADGGGG
GYGRHHVISSAENQHGQSQRGAQRQYSASQGGGPPLAPNVMPSATGWQVQ
QQQQHHHHHHQHQQVPRESLPQQQQHQTSFGQKSQPSLQPPAPAQSPPPS
STSAPSSRSARQPPSINTALANATIGSGFTNRPGHTEPLTSLDLRRQVSL
PPLSGAQPILTPARMAQTPPAAVSRLAFQHT
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mRNA from alignment at H-paniculata_contig8572:3607..4326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8572.16541.1 ID=mRNA_H-paniculata_contig8572.16541.1|Name=mRNA_H-paniculata_contig8572.16541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=720bp|location=Sequence derived from alignment at H-paniculata_contig8572:3607..4326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGGTTCGTCGGGTAGTGGTGGCACTAGTGCAGCTGATCGATCGTCTTT
CGGTTTCGGGGCTTCGGGACGGACGGTACCACAGGATACTGGAGTCAGCA
GTAGTGCGGTGGTGGGGCTGAGTAGGATGCGTGCTGACGGCGGCGGGGGC
GGCTACGGTCGTCACCATGCTGTCCACGGTCAAGGTCACGCCCAGGTGAT
TTCTTCTGCCGAAAACCAACACGGTCAGTCGCAACGAGGCGCTCAGAGAC
AATATTCTGCTTCTCAAGGCGGCGGCCCCCCTTTAGCGCCCAACGTCATG
CCCTCTGCAACTGGGTGGCAGGTACAGCAGCAGCAGCAGCACCACCACCA
CCATCACCAACACCAACAAGTGCCGCGAGAATCGCTACCCCAACAACAGC
AGCATCAGACATCGTTCGGACAGAAGTCGCAACCATCCCTGCAACCGCCC
GCCCCCGCGCAATCACCACCGCCGTCATCGACGTCCGCCCCGTCATCGCG
ATCAGCAAGACAACCACCCTCGATTAACACTGCCCTCGCCAACGCCACCA
TCGGCAGCGGCTTCACCAATAGACCGGGACACACGGAACCGCTGACATCG
CTGGATCTCCGCCGGCAAGTTTCCCTCCCGCCATTGTCTGGGGCGCAGCC
CATCTTGACCCCGGCGAGGATGGCGCAGACACCGCCGGCAGCCGTGTCCC
GCCTCGCTTTTCAACACACC
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Coding sequence (CDS) from alignment at H-paniculata_contig8572:3607..4326+

>mRNA_H-paniculata_contig8572.16541.1 ID=mRNA_H-paniculata_contig8572.16541.1|Name=mRNA_H-paniculata_contig8572.16541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at H-paniculata_contig8572:3607..4326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGGTTCGTCGGGTAGTGGTGGCACTAGTGCAGCTGATCGATCGTCTTT
CGGTTTCGGGGCTTCGGGACGGACGGTACCACAGGATACTGGAGTCAGCA
GTAGTGCGGTGGTGGGGCTGAGTAGGATGCGTGCTGACGGCGGCGGGGGC
GGCTACGGTCGTCACCATACGGGTTCGTCGGGTAGTGGTGGCACTAGTGC
AGCTGATCGATCGTCTTTCGGTTTCGGGGCTTCGGGACGGACGGTACCAC
AGGATACTGGAGTCAGCAGTAGTGCGGTGGTGGGGCTGAGTAGGATGCGT
GCTGACGGCGGCGGGGGCGGCTACGGTCGTCACCATGTGATTTCTTCTGC
CGAAAACCAACACGGTCAGTCGCAACGAGGCGCTCAGAGACAATATTCTG
CTTCTCAAGGCGGCGGCCCCCCTTTAGCGCCCAACGTCATGCCCTCTGCA
ACTGGGTGGCAGGTACAGCAGCAGCAGCAGCACCACCACCACCATCACCA
ACACCAACAAGTGCCGCGAGAATCGCTACCCCAACAACAGCAGCATCAGA
CATCGTTCGGACAGAAGTCGCAACCATCCCTGCAACCGCCCGCCCCCGCG
CAATCACCACCGCCGTCATCGACGTCCGCCCCGTCATCGCGATCAGCAAG
ACAACCACCCTCGATTAACACTGCCCTCGCCAACGCCACCATCGGCAGCG
GCTTCACCAATAGACCGGGACACACGGAACCGCTGACATCGCTGGATCTC
CGCCGGCAAGTTTCCCTCCCGCCATTGTCTGGGGCGCAGCCCATCTTGAC
CCCGGCGAGGATGGCGCAGACACCGCCGGCAGCCGTGTCCCGCCTCGCTT
TTCAACACACCGTGATTTCTTCTGCCGAAAACCAACACGGTCAGTCGCAA
CGAGGCGCTCAGAGACAATATTCTGCTTCTCAAGGCGGCGGCCCCCCTTT
AGCGCCCAACGTCATGCCCTCTGCAACTGGGTGGCAGGTACAGCAGCAGC
AGCAGCACCACCACCACCATCACCAACACCAACAAGTGCCGCGAGAATCG
CTACCCCAACAACAGCAGCATCAGACATCGTTCGGACAGAAGTCGCAACC
ATCCCTGCAACCGCCCGCCCCCGCGCAATCACCACCGCCGTCATCGACGT
CCGCCCCGTCATCGCGATCAGCAAGACAACCACCCTCGATTAACACTGCC
CTCGCCAACGCCACCATCGGCAGCGGCTTCACCAATAGACCGGGACACAC
GGAACCGCTGACATCGCTGGATCTCCGCCGGCAAGTTTCCCTCCCGCCAT
TGTCTGGGGCGCAGCCCATCTTGACCCCGGCGAGGATGGCGCAGACACCG
CCGGCAGCCGTGTCCCGCCTCGCTTTTCAACACACC
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