mRNA_H-paniculata_contig8569.16538.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8569.16538.1
Unique NamemRNA_H-paniculata_contig8569.16538.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8569.16538.1 vs. uniprot
Match: D8LTL7_ECTSI (Heavy metal translocating P-type ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL7_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 2.350e-86
Identity = 178/315 (56.51%), Postives = 214/315 (67.94%), Query Frame = 1 
Query:  910 MIMLDVEGMMCQKNCGSTVKKALDAAPGVSRSEVSFADRQARVWGRAGVMTVAD------LVDAVEAVGFGVCAPPDVELEVDGMMCQKSCGSTVKAALQQVPGVSRAEVSFPEKRAKVWGVGVAVSAVVDAVESVGFGARIPSDVVLDIGGMMCQKNCGSTVSSALERVPGVARAEVSFADKRAEVWGVVGS-GV-IVTAHLVDAVEAIGFEARVSPEFELELEGMMCQNSCGATVRKALEKVSGVVRAEVSFVDKRARVWGNGRRKXXXXXXXXXXXXXXXXXXXSAGVL-SAEVLVGAVEDVGFEARCRSSP 1827
            +++L VEGMMCQ NCGSTV++AL + PGV R+EVSFA+ +ARVW   G     D      +V AVE+VGFG    PDV LEV+GMMCQ++CG+TV+AAL  V GV RAEVSF ++RA VW  G    A+V AVE VGFGA +   V+L +GGMMCQKNCG+TV  ALE VPGV+RAEVSFA KRA VWG  GS GV + +A LVDA+E IGFEA  +P  ELE+ GMMCQNSCG TVR+ALE V+GV RAEVSF +KRARVWG+                         GVL S   LV AV  VGF+A   ++P
Sbjct:    2 VVVLAVEGMMCQNNCGSTVRQALTSVPGVLRAEVSFAESRARVWTGDGSSAGGDPALLDSIVGAVESVGFGAMVLPDVVLEVEGMMCQRNCGTTVQAALAAVAGVHRAEVSFADRRALVWLNGGTEDALVAAVEGVGFGAEVAPAVLLAVGGMMCQKNCGTTVRQALEAVPGVSRAEVSFAQKRARVWGGGGSEGVGLRSADLVDAIETIGFEAAEAPAVELEVSGMMCQNSCGTTVRQALENVAGVSRAEVSFAEKRARVWGSS----------------------GGGVLLSTGTLVDAVVTVGFDASGAAAP 294
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BLAST of mRNA_H-paniculata_contig8569.16538.1 vs. uniprot
Match: A0A836CEY3_9STRA (Putative copper-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEY3_9STRA)

HSP 1 Score: 221 bits (562), Expect = 3.210e-57
Identity = 119/206 (57.77%), Postives = 143/206 (69.42%), Query Frame = 1 
Query:  910 MIMLDVEGMMCQKNCGSTVKKALDAAPGVSRSEVSFADRQARVWGRAGVMTVADLVDAVEAVGFGVCAPPDVELEVDGMMCQKSCGSTVKAALQQVPGVSRAEVSFPEKRAKVWGVGVAVSAVVDAVESVGFGARIPSDVVLDIGGMMCQKNCGSTVSSALERVPGVARAEVSFADKRAEVWGVVGSGVIVTAHLVDAVEAIGFEA 1527
            ++ L VEGMMCQKNCGSTV KAL + PG  R+EVSFADRQAR WG A       LVDAVE VGF  C  PD+ ++V GMMCQK+CGSTV+ AL  V GV++AEVSF + +A+VWG    +  +V AVE VGF A +  DV+L + GMMCQKNCGST   AL  VPGV  AEVSF D +A+VWG           LV+A+EA+GFEA
Sbjct:   21 IVTLHVEGMMCQKNCGSTVHKALMSVPGTVRAEVSFADRQARAWGTA---VAKALVDAVEGVGFDACVAPDITIDVVGMMCQKNCGSTVQKALAAVAGVTKAEVSFKDGQARVWG-SAPLGELVQAVEMVGFDASLAPDVMLYVTGMMCQKNCGSTAQKALASVPGVTTAEVSFQDSQAKVWGTAAPD-----SLVNALEAVGFEA 217
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BLAST of mRNA_H-paniculata_contig8569.16538.1 vs. uniprot
Match: D8LTS5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS5_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 3.430e-41
Identity = 136/373 (36.46%), Postives = 171/373 (45.84%), Query Frame = 1 
Query:  919 LDVEGMMCQKNCGSTVKKALDAAPGVSRSEVSFADRQARVW-------------------------------------------GRAGVMTVADLVDAVEAVGFGVCAPPDVELEVDGMMCQKSCGSTVKAALQQV-PGVSRAEVSFPEKRAKVWGVGVAVSAVVDAVESVGFGAR-IPSDVVLDIGGMMCQKNCGSTVSSALERVPGVARAEVSFADKRAEVWGVVGSGVIVTAHLVDAVEAIGFEARVSPEFELELEGMMCQNSCGATVRKALEKVSGVVRAEVSFVDKR-ARVWGNGRRKXXXXXXXXXXXXXXXXXXXSAGVLSAEVLVGAVEDVGFEARCRSSPSSCFSSSXXXXXKQPK--SGVAGG 1893
            +DVEGMMCQ NCGSTVK+A++A PGVSR+EVSFA R+A  W                                                   A++++AVEAVGFG  A PDVEL V GMMCQ++CG+TV+ AL  V P  +RAE SF E R ++W     + A    +   G G+  +  D   D  G                       AE S +D+ A           V    V+ +EA+GF+A ++P   LE+EGMMCQ SCG TVR  LE V GV RAEVS+ + R ARVW     +                       L   VLV AVEDVGF AR    P+     S      + K  SGV GG
Sbjct:   28 IDVEGMMCQNNCGSTVKRAIEAVPGVSRAEVSFAARRAWAWLSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAVFAEILEAVEAVGFGAEASPDVELLVGGMMCQRNCGTTVRNALLSVSPSFARAEASFEEGRGRIW-----IRAAASGLGGPGLGSGLVAGDNEADGSGXXXXXXF---------------LAEASSSDESAA----------VARLAVEELEAVGFDASLAPSAVLEIEGMMCQKSCGTTVRGCLEAVPGVDRAEVSYAEGRLARVWARDGPR-----------------------LPVSVLVEAVEDVGFGARVVRGPAEKDGDSGTSPAAEEKRPSGVGGG 347
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BLAST of mRNA_H-paniculata_contig8569.16538.1 vs. uniprot
Match: A0A2R5GPV5_9STRA (Copper-transporting ATPase RAN1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GPV5_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.450e-25
Identity = 113/333 (33.93%), Postives = 146/333 (43.84%), Query Frame = 1 
Query:  901 MTTMIMLDVEGMMCQKNCGSTVKKAL-DAAPGVSRSEV--SFADRQARVWGRAGVMTVADLVDAVEAVGFGVCAPPDVE----------------------LEVDGMMCQKSCGSTVKAALQQVPGVSRAEVSFPEKRAKVWGVGVAVSAV-VDAVESVGFGARIPSDV---------------------VLDIGGMMCQKNCGSTVSSALERVPGVARAEVSFADKRAEVWGVVGSGVIVTAHLVDAVEAIGFEARVSPEFE--------------------------------------LELEGMMCQNSCGATVRKALEKVSGVVRAEVS 1644
            M +M++L +EGMMCQKNCG+TV  AL +A P +  +EV  S A   A V+     +  A LV+AVE +GF   A  D                        L V+GMMCQK+CG+TV  AL+     +   VS     A V G  V  SAV VDAVE +GF A+   DV                     V D+ GMMCQKNCG+TV++AL      A   VS     A V G   + +     L+DAV+ IGF+A V  +                                        L +EGMMCQ +CG TV  AL   +   +  VS
Sbjct:    1 MASMVVLALEGMMCQKNCGTTVYNALRNAIPNLPLAEVIVSHALSAALVYAPGTALDAAMLVEAVEMIGFDATAIDDAADLVPRLREDAAQRGAPHFASCTLAVEGMMCQKNCGTTVTNALRAAAPGAHVVVSHALSAALVEGPRVPGSAVLVDAVEMIGFDAKPVFDVDLANELRRIVPNAPTPAHALLVFDVEGMMCQKNCGTTVANALRSAAPSASVFVSHPLAAALVEG---ADLPSPQTLIDAVDMIGFDAAVVADASRAAKLADDLRSVSSSAQPSVTTXXXXXXXXXXTQRAVLLRVEGMMCQKNCGTTVANALLTAAPGAKVRVS 330
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BLAST of mRNA_H-paniculata_contig8569.16538.1 vs. uniprot
Match: A0A8K1FHJ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHJ2_PYTOL)

HSP 1 Score: 119 bits (299), Expect = 3.730e-24
Identity = 103/310 (33.23%), Postives = 142/310 (45.81%), Query Frame = 1 
Query:  919 LDVEGMMCQKNCGSTVKKALDAAPGVSRSEVSFADRQARVWGRAGVMTVADLVDAVEAVGFGVCAPPD------------VELEVDGMMCQKSCGSTVKAALQQVPGVSRAEVSFPEKRAKVWGV---GVAVSAVVDAVESVGFGA---------------------RIPSDVVLDIG------------GMMCQKNCGSTVSSALERVPGVARAEVSFADKRAEVWGVVGSGVI--VTAHLVDAVEAIGFEARVSP----------EFELELEGMMCQNSCGATVRKALEKVSGVVRAEVSFVDKRARV 1668
            L +EGMMC KNCG+TV+ AL   PGV  + VSF    ARV   AGV T  DLVDAVE VGFG     D            +EL V+GMMCQK+CGSTV+ AL+ V GV  A V F +++A V         +  ++D VE +GF A                     +   DVV+D+             GM C   C   +   L +  GV    V    ++AE+  +    +I      L + +E  G++A  S           E    + GM C  +C   V +A+ K+SGV + +V+    +A V
Sbjct:   28 LAIEGMMCMKNCGTTVQSALRNVPGVISAVVSFETHSARVECAAGV-TGDDLVDAVECVGFGAVVKKDSLNATKPVDPLVIELLVEGMMCQKNCGSTVENALRNVDGVLSAVVVFDKRKATVTLTHEHSATLEELIDMVEIIGFSASEYDAEKAMKIIMQDKKAKQVKEEQDVVMDLSDGDHPRAFFKVEGMSCAA-CVKAIEDHLRKKEGVVDCRVGLISQKAEI--IFDRDLIRDEQTELKNCIEDAGYKATFSHCVESGDDDSIELRFTVTGMSCA-ACVGKVEQAVGKLSGVTKVQVNLTLHKAHV 332
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BLAST of mRNA_H-paniculata_contig8569.16538.1 vs. uniprot
Match: A0A3F2RK46_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RK46_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.380e-23
Identity = 88/234 (37.61%), Postives = 112/234 (47.86%), Query Frame = 1 
Query: 1111 APPDVELEVDGMMCQKSCGSTVKAALQQVPGVSRAEVSFPEKRAKVW---GVGVAVSAVVDAVESVGFGARIPSD----------VVLDIGGMMCQKNCGSTVSSALERVPGVARAEVSFADKRAEVWGVVGSGVIVTAHLVDAVEAIGFEARV-----------------------------------SPEFELELEGMMCQNSCGATVRKALEKVSGVVRAEVSFVDKRARV 1668
            AP  VEL V+GMMC K+CGSTV++AL+ V GV+ A V F ++ A+V       V  S +VDAVE VGFGA +             + L + GMMCQKNCG+TV +AL  V GVA A VSF D+ A V  +   G      LVD VE +GFEA                                      P     +EGM C  +C   +   L KV GVV   V  + ++A V
Sbjct:  483 APVVVELAVEGMMCMKNCGSTVQSALRSVEGVASAVVDFEQRSARVEYLPDAKVTASDLVDAVECVGFGAAVKEPAKQENNKELTIRLLVKGMMCQKNCGTTVENALSGVDGVASAVVSFEDRMATVT-LSSPGSTTLEELVDMVECVGFEASAYDAVKAAEIKLQAKKQKEQQKEEESVTLDVPDATGHPRAVFHVEGMSCA-ACVKAIENYLGKVEGVVYCRVGLISQKAEV 714
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BLAST of mRNA_H-paniculata_contig8569.16538.1 vs. uniprot
Match: A0A2D4BDA3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDA3_PYTIN)

HSP 1 Score: 113 bits (283), Expect = 1.820e-22
Identity = 81/230 (35.22%), Postives = 112/230 (48.70%), Query Frame = 1 
Query: 1126 ELEVDGMMCQKSCGSTVKAALQQVPGVSRAEVSFPEKRAKVW---GVGVAVSAVVDAVESVGFGARI-----------PSDVVLDIGGMMCQKNCGSTVSSALERVPGVARAEVSFADKRAEVWGVVGSGVIVTAHLVDAVEAIGFEARV-----------------------------------SPEFELELEGMMCQNSCGATVRKALEKVSGVVRAEVSFVDKRARV 1668
            EL ++GMMCQK+CG+TV+ AL+ VPGV +A V+F    A+V      GV    ++DAVESVGFGA +           P  + L + GMMCQKNCG+TV +AL+ V GVA AEV F DKR     +   G      LVD V+ +GF A                                     +P    ++EGM C  +C   +   L K+ GV+   V  + ++A +
Sbjct:   30 ELVIEGMMCQKNCGTTVQNALKGVPGVDKAVVTFATHSARVTCAPEAGVTPDELIDAVESVGFGAMLKAPAGGSTSSDPLVIELLVEGMMCQKNCGTTVQNALKSVDGVASAEVVF-DKRKATVTLTHEGSTTLEELVDMVDIVGFVASAYDPEKAMKIIMEDKKAKQLAQETADSGLSELTSVDNPRAFFKVEGMSCA-ACVKAIEDHLRKMDGVLDCRVGLISQKAEI 257
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BLAST of mRNA_H-paniculata_contig8569.16538.1 vs. uniprot
Match: A0A662Y8Q1_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y8Q1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.030e-22
Identity = 103/316 (32.59%), Postives = 142/316 (44.94%), Query Frame = 1 
Query:  910 MIMLDVEGMMCQKNCGSTVKKALDAAPGVSRSEVSFADRQARVWGRAGV-MTVADLVDAVEAVGFGVCA-------------PPDVELEVDGMMCQKSCGSTVKAALQQVPGVSRAEVSFPEKRAKVW---GVGVAVSAVVDAVESVGFGARI-----------------------PSDVVLD-------------IGGMMCQKNCGSTVSSALERVPGVARAEVSFADKRAEVW---GVVGSGVIVTAHLV-DAVEAIGFEARVSP------EFELELEGMMCQNSCGATVRKALEKVSGVVRAEVSFVDKRARV 1668
            ++ L VEGMMC KNCGSTV+ AL +  GV+ + V F  R ARV    G  +T +DLVDAVE VGFG                P ++ L V+GMMCQK+CG+TV+ AL+ V GV+ A V F  + A V         +  +VD VE VGF A                          SDV L+             + GM C   C   +   L +V GV    V    ++AEV     ++ +  +  A L+ DA     +   V P      E +  + GM C  +C   V  A+ K+ GV +  V+    +A V
Sbjct:    2 VVELAVEGMMCMKNCGSTVQSALRSVDGVASAVVDFEARSARVECLPGASVTASDLVDAVECVGFGAAVKDTTTMKTERETNPLEIALLVEGMMCQKNCGTTVENALRGVDGVASAAVDFDRRLATVTLRSAGSTTLEELVDMVECVGFEASAYDAAKAAAIKLQARKEAEAAKQEKSDVALEMPQATGHPRAVFRVEGMSCAA-CVKAIEDLLGKVEGVVDCRVGLISQKAEVAFDRDLIQNEQVALAQLIQDAGYKATYSHVVEPGDDDSIELKFTVTGMSCA-ACVGKVEAAVGKLPGVTKVLVNLPLNKAHV 315
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BLAST of mRNA_H-paniculata_contig8569.16538.1 vs. uniprot
Match: V9F3H5_PHYPR (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9F3H5_PHYPR)

HSP 1 Score: 109 bits (272), Expect = 5.120e-22
Identity = 82/235 (34.89%), Postives = 109/235 (46.38%), Query Frame = 1 
Query: 1114 PPDVELEVDGMMCQKSCGSTVKAALQQVPGVSRAEVSFPEKRAKVW---GVGVAVSAVVDAVESVGFGARI--------------PSDVVLDIGGMMCQKNCGSTVSSALERVPGVARAEVSFADKRAEVWGVVGSGVIVTAHLVDAVEAIGFEARV---------------------------------SPEFELELEGMMCQNSCGATVRKALEKVSGVVRAEVSFVDKRARV 1668
            P  VEL V+GMMC K+CG+TV++AL+ V GV+ A V F +  A V    G  V    +VDAVE VGFGA +              P  + L + GMMCQKNCG+TV +AL  V GVA   VSF  ++A V  ++  G      LVD VE +GFEA                                    P     +EGM C  +C   +   + K  GV+   V  + ++A V
Sbjct:    8 PLVVELAVEGMMCMKNCGNTVQSALRSVDGVADAVVDFEKHSAHVECIPGASVTADDLVDAVECVGFGAAVKTPTNMQTDSETQDPLTIELLVEGMMCQKNCGTTVENALRGVDGVADVVVSFEHRKATVT-LLRPGSTTLEQLVDMVECVGFEASAYDAAKAAAIKLQAQXXXXQETEEVAVDMPDVGGHPRAVFHVEGMSCA-ACVKAIEDYVGKAEGVLHCRVGLISQKAEV 240
[Close]
BLAST of mRNA_H-paniculata_contig8569.16538.1 vs. uniprot
Match: A0A7S2UWL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWL7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.250e-21
Identity = 61/118 (51.69%), Postives = 70/118 (59.32%), Query Frame = 1 
Query:  931 GMMCQKNCGSTVKKALDAAPGVSRSEVSFADRQARVWGRAGVMTVADLVDAVEAVGF-----------GVCAPPDVELEVDGMMCQKSCGSTVKAALQQVPGVSRAEVSFPEKRAKVW 1251
            GMMC KNCGST+K AL A  GV   EVS   + A VW  A  +    L  AVEAVGF           G+C P  +ELEV+GMMCQK+CG+TV  AL   PGV  A+VSF E  A VW
Sbjct:    1 GMMCMKNCGSTIKSALGAVNGVQHVEVSLESKWALVWS-AHRVGGDQLRAAVEAVGFEAAEVSANGVAGIC-PQHLELEVEGMMCQKNCGTTVHKALSSTPGVVFAKVSFAESAAYVW 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8569.16538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTL7_ECTSI2.350e-8656.51Heavy metal translocating P-type ATPase n=2 Tax=Ec... [more]
A0A836CEY3_9STRA3.210e-5757.77Putative copper-transporting ATPase n=1 Tax=Tribon... [more]
D8LTS5_ECTSI3.430e-4136.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2R5GPV5_9STRA1.450e-2533.93Copper-transporting ATPase RAN1 n=1 Tax=Hondaea fe... [more]
A0A8K1FHJ2_PYTOL3.730e-2433.23Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2RK46_9STRA1.380e-2337.61Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A2D4BDA3_PYTIN1.820e-2235.22Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A662Y8Q1_9STRA4.030e-2232.59Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
V9F3H5_PHYPR5.120e-2234.89Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A7S2UWL7_9STRA1.250e-2151.69Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8569contigH-paniculata_contig8569:3833..8602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score306.6
Seed ortholog evalue2.6e-80
Seed eggNOG ortholog2880.D8LTL7
KEGG rclassRC00002
KEGG koko:K17686
KEGG TC3.A.3.5
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,map01524,map04016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cation-transporting ATPase activity
EggNOG OGsCOG2217@1,KOG0207@2759
EC3.6.3.54
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size2036
Cds size1836
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8569.16538.1prot_H-paniculata_contig8569.16538.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8569 4031..8602 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931077.117001-UTR-H-paniculata_contig8569:3832..40301622931077.117001-UTR-H-paniculata_contig8569:3832..4030Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8569 3833..4030 +
1691481579.2425637-UTR-H-paniculata_contig8569:3832..40301691481579.2425637-UTR-H-paniculata_contig8569:3832..4030Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8569 3833..4030 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931077.128887-CDS-H-paniculata_contig8569:4030..40981622931077.128887-CDS-H-paniculata_contig8569:4030..4098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8569 4031..4098 +
1691481579.2532315-CDS-H-paniculata_contig8569:4030..40981691481579.2532315-CDS-H-paniculata_contig8569:4030..4098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8569 4031..4098 +
1622931077.142465-CDS-H-paniculata_contig8569:6834..86021622931077.142465-CDS-H-paniculata_contig8569:6834..8602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8569 6835..8602 +
1691481579.2713943-CDS-H-paniculata_contig8569:6834..86021691481579.2713943-CDS-H-paniculata_contig8569:6834..8602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8569 6835..8602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8569.16538.1

>prot_H-paniculata_contig8569.16538.1 ID=prot_H-paniculata_contig8569.16538.1|Name=mRNA_H-paniculata_contig8569.16538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=612bp
MVLGSAADVIVITAEGLKEQCTRISSTPDFIRLVLTVVEGVEDVVIDPES
NTIRVYRSSDNSPAAVEVNAAGRRNSRNGIGPDPQDLLRHLEDVCEGLTF
AIAAAPAYCNSSDLPPLSASHANAHDRKGDNGDTLLTDGDESTSDGYGTP
SFLRQGGSQSALDHNGYTYSPQAKLVLPSLDELTGRNHNSEATSGSQIGT
AVAAAAVAEFDLVTSRIETDNQPEPQQIQPEAPQMTTMIMLDVEGMMCQK
NCGSTVKKALDAAPGVSRSEVSFADRQARVWGRAGVMTVADLVDAVEAVG
FGVCAPPDVELEVDGMMCQKSCGSTVKAALQQVPGVSRAEVSFPEKRAKV
WGVGVAVSAVVDAVESVGFGARIPSDVVLDIGGMMCQKNCGSTVSSALER
VPGVARAEVSFADKRAEVWGVVGSGVIVTAHLVDAVEAIGFEARVSPEFE
LELEGMMCQNSCGATVRKALEKVSGVVRAEVSFVDKRARVWGNGRRKRRG
GEMAAAAGGDGSGGGGSAGVLSAEVLVGAVEDVGFEARCRSSPSSCFSSS
AAAAVKQPKSGVAGGDDNGHSSSMGYDSDGDKLPGGGGGGGGRGGKGGGS
RLTMGNCGDRAG
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mRNA from alignment at H-paniculata_contig8569:3833..8602+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8569.16538.1 ID=mRNA_H-paniculata_contig8569.16538.1|Name=mRNA_H-paniculata_contig8569.16538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4770bp|location=Sequence derived from alignment at H-paniculata_contig8569:3833..8602+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGATATGATGTGTGATGATAATCAAATATGGTGATAAACGCAAAGCTC
GCCCTAGATCGAGAGGGACTTCACGCATTGTTGTGGTGCTGGGCTCGTGT
CGGGATTACAAGCGGGGTACTGGAGTGTCACAGAGGCCTCAATATATTTG
TCTCCTTTGTATGAGGAGGGAGCGTGCTTTGTGACCGCGTCATATCAAAT
GGTTCTCGGTTCAGCAGCGGACGTCATCGTCATCACTGCGGAAGGTCTCA
AGGAACAATGTACTAGGTGAGGCGGACAGATCCGTCTGTATCCTGTATCG
TGATGAACAAAATCACACACACACACACACAGACACACACATGGTGTGAT
ACACACTCAAGGAATACCTTCAAACAGCACAATTGTCTATGGTAAACGTC
GGAAATTCACTTTGCTTCTGATCCTGGAGATAACAACACGGCAATGAATA
TCAGGCTCGCATCTTGCATATGCTAACACAACATCATTTGTTCATGGCGA
AACTGACACAACAACCTGTTGTGTTGCAGCCCATAAATGGCGAAGCACCC
TTGGTCTGGGTGACAGCGGGGCAATACATGCGCCCAGCAGGCATCCCCTG
TTTTACAGTGCCTGGTTGAAACAGCTAGTAATCGTATTGATGCTCTCTCT
CCCCCAGTCCCTCCCTCTCAGTTAGAGCAGAGAGAAGAAGAGAGCGACAC
AAGAGGAGAGATAGCTTGATTTTTTACGTACCTCTGTAACAGTGCTTTGT
ACGTGAATATTGTAATAGTAATAATTTTCCCTGTGGATATGTAAATCACT
AGTAGTTGCGATGTAACTTGTGCCGCATCCCGCTTTCTTCGAGCCAGGCA
CGAAATCACGGAGGCAAAGCGTGACATTGGGCTAGGTTTTGTTCCGTGCC
CGATAGGGGCAGTAGGGGTCTTTAACGTGTGTTGGCAGCGGCACGCATAA
AGAAATTCTGCTCTTTGTAACGGGTGTTTTGTGTTGTGTAGTTTTATAAT
ATTACAGGCAGTGAAGGCGGAAGCGGCAACCTCCGTCAAACTATACCAAA
TTATATTTACAGTCTACCCGCGGTCAACACGAAGATACACACAACAGTGA
AAAAGTACAATAGTGATTACACCAGCAACCAACTATCATGTCCCCACCGC
ATTCACGAACGACTCAAAAATGGTACGTCACACATGGATAAAACAATAAA
CAGGTAAGGCCCATAACAAAAAAATTATCTTACACTGAGTATTATTTACA
ATTTATATTTTTGGTCGGATCCGGGTAGACAATACTTGAATGTTAACTGG
TAATTCTGATAATCCTGTTTACAAGACGTTAACCGGATGGAGTTATTTCA
ATTTCTTCAACTAAAGTAAATCCTCAAATCAAAATAATGGATAGTCCATC
GCGTCCGGTATATCCGGCAGCAGTGCCCAGGGAGCGTCGGGACTTCATAT
CTATTGTGTTTTTTCGGCATTCAATCTTACTACAGGCTTGTGCAGTTATT
TCTGGTACGTCGGCTAAACCTGGGTCTCCGGTACTGACACAGCTGAATCG
CGAGAATGCTTGTTTCCTTGTCGTCTCTTGGGCATGCATGTCCACCATTT
TAGCGACAGGAAAATGAAAAGAAATTTCTGCCGGTCCAACTTAGTTCAAA
GCACAGCCAAATATACGGATAATGATTTGGGGGGGATAGGATTATTGGTT
CAGCGCTCCTGAGATAGCCATAAACTAGGCTCCCCACGCGCGTCGTGCCC
GGAAAGCGGTCTATACGACATTCAAATCAACGCAACAGGCGTAGGATGCC
TTCGTGGTCATCACAGGAGCGTGGCACCAGCAATCCCGTGCGTCCAAAGC
GTTGATTGCGTCTCTGCTAGGGCCCGCTGCTATATACCCCTGAATCCTTC
CCCTTTCGCCGACACAGTTCCAGTCGGATCTTTGCCCTGGCAATGCATAT
TAGAGTCTATTGCTTTGGGTTCAGCGTCAAACTTCGGGTCACGATGGGGT
CTGGGCTCGGGCGGTTGGGGGGTTGTTGGGGCACCTGTTGTGTGAACTGT
TTGAAGATCCAATTTGGGTTTCGAGAAAAGCTTGTGTTGATTGGATGCGA
GAGCGCTGCGTATTTGCTCTCGGCCGAAATAGCATTTTTTCCTACTGCCA
GTGTTGTACCTTTACGACAGCTTTCCAGCCACACAGCAGGGGCACGTGTA
TTGCCAGAAACGTCTACTGTACTATACAGTCAGAAAACACACAGTCTACG
GTTCGATTTTTTCAAGAACCGTTCAAGATTTGGAATCTATGTCAAAATTA
CTCAATTTTTTTCTTCGCTTGGTAGAATAGCGGGCTCGGCGGATTCCAGG
GGGTAGGTCATCACATTATTTCTGACATGCCCTTGGACACAGCTTGCTTT
TGTTACGAGCACCGCGGTTTTAAGAAAACCAATTTGTAGAGTAAACTGTT
TTCACTGATGATAAAATGTTAACTGTAGTGTAAATGAGGAATTGCCACCA
AATTTTTGTCATTTGCTGTTAAATAGTGGTGTTGGTCAAAATCGCTTCCA
GCTTGTCCAGCTCATTTTCTGACGCTTCGAATGTTGGCTGGAGTGTATGG
CATAACAGCCGTTCTAGACTTGGGTGTTATTTTTTTTTATTTTATTTTTT
TTAATCTTTTCTCTCAATAACAGGCTGATATATTGTGTCGGAAAAATCGA
AATTTTTTTGAAAGGGATCAAGAAGCACTATAGGCAAAGACATCGCTTTT
TTATTTCCTGAATATGGAGAAATTCAAACGGCGAAAATAAATAAATAAAA
AAAACAAGAAAAGAGAAAAAAGGAAAAAAAACACCAACGATTAGTATTCA
GAACGGCCCTGAACCTGTCTGAAAATTAGCCTCGCTCTAGATTCCAACCT
TTATTCCGATATCAGTATTCGGTCAATATCCCATCTTGCGCATCCCTGTT
ACGCAATCCTTTAACTTTGCTGTTGCGTGTCCTCTTTTTGCTATGTGATC
AGAATATCATCAACGCCAGACTTCATCAGACTGGTCCTCACAGTTGTCGA
GGGAGTCGAGGACGTGGTGATAGACCCAGAGTCCAACACCATTAGAGTTT
ACCGTAGTAGCGATAACAGTCCTGCTGCGGTCGAAGTTAATGCAGCGGGG
CGGCGAAATTCCCGGAATGGCATCGGTCCCGACCCGCAAGACTTGCTAAG
GCACTTAGAAGACGTCTGCGAAGGTTTGACGTTCGCCATAGCTGCAGCGC
CCGCTTACTGCAATTCCTCGGATCTACCACCACTTTCGGCCAGCCACGCC
AACGCCCATGACCGCAAAGGTGACAATGGCGATACGCTCCTAACGGATGG
GGATGAAAGCACATCCGATGGTTACGGAACGCCGAGCTTTTTGCGCCAAG
GAGGATCCCAATCCGCACTAGATCATAACGGTTACACGTACTCCCCCCAG
GCTAAGTTGGTGTTACCGTCACTCGATGAACTGACAGGCCGAAACCACAA
TTCTGAGGCTACTAGCGGTAGTCAAATAGGCACAGCGGTGGCGGCCGCGG
CGGTGGCGGAATTCGACCTGGTAACGTCCCGAATCGAAACAGACAATCAA
CCCGAACCGCAACAAATACAACCAGAGGCGCCGCAGATGACAACAATGAT
AATGCTGGATGTAGAGGGAATGATGTGCCAAAAAAATTGCGGCTCGACGG
TGAAGAAGGCCCTAGACGCCGCTCCGGGAGTCAGCCGATCTGAAGTGTCC
TTCGCCGACCGACAGGCGAGGGTCTGGGGCCGCGCGGGAGTGATGACAGT
AGCGGACCTGGTGGATGCTGTGGAAGCTGTAGGTTTCGGAGTGTGCGCGC
CTCCTGACGTGGAGCTCGAGGTCGACGGCATGATGTGCCAGAAAAGTTGC
GGCTCGACTGTAAAGGCTGCGCTGCAGCAGGTACCCGGTGTGTCTCGCGC
CGAAGTCTCGTTCCCTGAGAAGAGAGCAAAGGTGTGGGGTGTCGGAGTAG
CGGTGAGTGCGGTGGTAGACGCGGTGGAATCTGTAGGGTTCGGCGCACGG
ATTCCGTCGGATGTGGTGCTGGACATCGGGGGCATGATGTGCCAGAAGAA
CTGCGGGTCGACCGTCTCGAGCGCGCTCGAGAGGGTGCCTGGTGTGGCAC
GCGCGGAGGTGTCCTTCGCGGATAAACGCGCGGAGGTTTGGGGGGTTGTC
GGTAGCGGGGTGATCGTGACCGCCCACCTTGTTGACGCGGTCGAGGCAAT
CGGGTTCGAGGCAAGGGTCTCGCCCGAGTTCGAGCTCGAGCTCGAGGGCA
TGATGTGCCAGAACAGCTGCGGCGCTACGGTCAGGAAGGCGCTGGAGAAG
GTGTCAGGGGTGGTGCGGGCTGAAGTCTCGTTTGTCGATAAACGCGCGCG
AGTGTGGGGTAATGGTCGGAGGAAAAGAAGAGGAGGTGAGATGGCTGCTG
CTGCTGGCGGCGACGGTAGTGGCGGCGGTGGGAGTGCTGGTGTGTTGTCA
GCGGAGGTTCTGGTGGGTGCGGTCGAGGACGTCGGGTTCGAAGCCCGTTG
TCGTTCTTCCCCTTCCTCCTGCTTTTCCTCGTCGGCCGCAGCCGCCGTGA
AACAGCCGAAAAGTGGCGTCGCCGGCGGAGACGACAATGGTCACTCTTCT
TCCATGGGCTATGATAGTGATGGAGATAAGCTGCCGGGAGGTGGCGGCGG
CGGCGGTGGGAGAGGAGGGAAAGGAGGAGGGAGTAGGTTGACGATGGGAA
ACTGCGGTGACCGCGCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8569:3833..8602+

>mRNA_H-paniculata_contig8569.16538.1 ID=mRNA_H-paniculata_contig8569.16538.1|Name=mRNA_H-paniculata_contig8569.16538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3672bp|location=Sequence derived from alignment at H-paniculata_contig8569:3833..8602+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCTCGGTTCAGCAGCGGACGTCATCGTCATCACTGCGGAAGGTCT
CAAGGAACAATGTACTAGATGGTTCTCGGTTCAGCAGCGGACGTCATCGT
CATCACTGCGGAAGGTCTCAAGGAACAATGTACTAGAATATCATCAACGC
CAGACTTCATCAGACTGGTCCTCACAGTTGTCGAGGGAGTCGAGGACGTG
GTGATAGACCCAGAGTCCAACACCATTAGAGTTTACCGTAGTAGCGATAA
CAGTCCTGCTGCGGTCGAAGTTAATGCAGCGGGGCGGCGAAATTCCCGGA
ATGGCATCGGTCCCGACCCGCAAGACTTGCTAAGGCACTTAGAAGACGTC
TGCGAAGGTTTGACGTTCGCCATAGCTGCAGCGCCCGCTTACTGCAATTC
CTCGGATCTACCACCACTTTCGGCCAGCCACGCCAACGCCCATGACCGCA
AAGGTGACAATGGCGATACGCTCCTAACGGATGGGGATGAAAGCACATCC
GATGGTTACGGAACGCCGAGCTTTTTGCGCCAAGGAGGATCCCAATCCGC
ACTAGATCATAACGGTTACACGTACTCCCCCCAGGCTAAGTTGGTGTTAC
CGTCACTCGATGAACTGACAGGCCGAAACCACAATTCTGAGGCTACTAGC
GGTAGTCAAATAGGCACAGCGGTGGCGGCCGCGGCGGTGGCGGAATTCGA
CCTGGTAACGTCCCGAATCGAAACAGACAATCAACCCGAACCGCAACAAA
TACAACCAGAGGCGCCGCAGATGACAACAATGATAATGCTGGATGTAGAG
GGAATGATGTGCCAAAAAAATTGCGGCTCGACGGTGAAGAAGGCCCTAGA
CGCCGCTCCGGGAGTCAGCCGATCTGAAGTGTCCTTCGCCGACCGACAGG
CGAGGGTCTGGGGCCGCGCGGGAGTGATGACAGTAGCGGACCTGGTGGAT
GCTGTGGAAGCTGTAGGTTTCGGAGTGTGCGCGCCTCCTGACGTGGAGCT
CGAGGTCGACGGCATGATGTGCCAGAAAAGTTGCGGCTCGACTGTAAAGG
CTGCGCTGCAGCAGGTACCCGGTGTGTCTCGCGCCGAAGTCTCGTTCCCT
GAGAAGAGAGCAAAGGTGTGGGGTGTCGGAGTAGCGGTGAGTGCGGTGGT
AGACGCGGTGGAATCTGTAGGGTTCGGCGCACGGATTCCGTCGGATGTGG
TGCTGGACATCGGGGGCATGATGTGCCAGAAGAACTGCGGGTCGACCGTC
TCGAGCGCGCTCGAGAGGGTGCCTGGTGTGGCACGCGCGGAGGTGTCCTT
CGCGGATAAACGCGCGGAGGTTTGGGGGGTTGTCGGTAGCGGGGTGATCG
TGACCGCCCACCTTGTTGACGCGGTCGAGGCAATCGGGTTCGAGGCAAGG
GTCTCGCCCGAGTTCGAGCTCGAGCTCGAGGGCATGATGTGCCAGAACAG
CTGCGGCGCTACGGTCAGGAAGGCGCTGGAGAAGGTGTCAGGGGTGGTGC
GGGCTGAAGTCTCGTTTGTCGATAAACGCGCGCGAGTGTGGGGTAATGGT
CGGAGGAAAAGAAGAGGAGGTGAGATGGCTGCTGCTGCTGGCGGCGACGG
TAGTGGCGGCGGTGGGAGTGCTGGTGTGTTGTCAGCGGAGGTTCTGGTGG
GTGCGGTCGAGGACGTCGGGTTCGAAGCCCGTTGTCGTTCTTCCCCTTCC
TCCTGCTTTTCCTCGTCGGCCGCAGCCGCCGTGAAACAGCCGAAAAGTGG
CGTCGCCGGCGGAGACGACAATGGTCACTCTTCTTCCATGGGCTATGATA
GTGATGGAGATAAGCTGCCGGGAGGTGGCGGCGGCGGCGGTGGGAGAGGA
GGGAAAGGAGGAGGGAGTAGGTTGACGATGGGAAACTGCGGTGACCGCGC
GGGGAATATCATCAACGCCAGACTTCATCAGACTGGTCCTCACAGTTGTC
GAGGGAGTCGAGGACGTGGTGATAGACCCAGAGTCCAACACCATTAGAGT
TTACCGTAGTAGCGATAACAGTCCTGCTGCGGTCGAAGTTAATGCAGCGG
GGCGGCGAAATTCCCGGAATGGCATCGGTCCCGACCCGCAAGACTTGCTA
AGGCACTTAGAAGACGTCTGCGAAGGTTTGACGTTCGCCATAGCTGCAGC
GCCCGCTTACTGCAATTCCTCGGATCTACCACCACTTTCGGCCAGCCACG
CCAACGCCCATGACCGCAAAGGTGACAATGGCGATACGCTCCTAACGGAT
GGGGATGAAAGCACATCCGATGGTTACGGAACGCCGAGCTTTTTGCGCCA
AGGAGGATCCCAATCCGCACTAGATCATAACGGTTACACGTACTCCCCCC
AGGCTAAGTTGGTGTTACCGTCACTCGATGAACTGACAGGCCGAAACCAC
AATTCTGAGGCTACTAGCGGTAGTCAAATAGGCACAGCGGTGGCGGCCGC
GGCGGTGGCGGAATTCGACCTGGTAACGTCCCGAATCGAAACAGACAATC
AACCCGAACCGCAACAAATACAACCAGAGGCGCCGCAGATGACAACAATG
ATAATGCTGGATGTAGAGGGAATGATGTGCCAAAAAAATTGCGGCTCGAC
GGTGAAGAAGGCCCTAGACGCCGCTCCGGGAGTCAGCCGATCTGAAGTGT
CCTTCGCCGACCGACAGGCGAGGGTCTGGGGCCGCGCGGGAGTGATGACA
GTAGCGGACCTGGTGGATGCTGTGGAAGCTGTAGGTTTCGGAGTGTGCGC
GCCTCCTGACGTGGAGCTCGAGGTCGACGGCATGATGTGCCAGAAAAGTT
GCGGCTCGACTGTAAAGGCTGCGCTGCAGCAGGTACCCGGTGTGTCTCGC
GCCGAAGTCTCGTTCCCTGAGAAGAGAGCAAAGGTGTGGGGTGTCGGAGT
AGCGGTGAGTGCGGTGGTAGACGCGGTGGAATCTGTAGGGTTCGGCGCAC
GGATTCCGTCGGATGTGGTGCTGGACATCGGGGGCATGATGTGCCAGAAG
AACTGCGGGTCGACCGTCTCGAGCGCGCTCGAGAGGGTGCCTGGTGTGGC
ACGCGCGGAGGTGTCCTTCGCGGATAAACGCGCGGAGGTTTGGGGGGTTG
TCGGTAGCGGGGTGATCGTGACCGCCCACCTTGTTGACGCGGTCGAGGCA
ATCGGGTTCGAGGCAAGGGTCTCGCCCGAGTTCGAGCTCGAGCTCGAGGG
CATGATGTGCCAGAACAGCTGCGGCGCTACGGTCAGGAAGGCGCTGGAGA
AGGTGTCAGGGGTGGTGCGGGCTGAAGTCTCGTTTGTCGATAAACGCGCG
CGAGTGTGGGGTAATGGTCGGAGGAAAAGAAGAGGAGGTGAGATGGCTGC
TGCTGCTGGCGGCGACGGTAGTGGCGGCGGTGGGAGTGCTGGTGTGTTGT
CAGCGGAGGTTCTGGTGGGTGCGGTCGAGGACGTCGGGTTCGAAGCCCGT
TGTCGTTCTTCCCCTTCCTCCTGCTTTTCCTCGTCGGCCGCAGCCGCCGT
GAAACAGCCGAAAAGTGGCGTCGCCGGCGGAGACGACAATGGTCACTCTT
CTTCCATGGGCTATGATAGTGATGGAGATAAGCTGCCGGGAGGTGGCGGC
GGCGGCGGTGGGAGAGGAGGGAAAGGAGGAGGGAGTAGGTTGACGATGGG
AAACTGCGGTGACCGCGCGGGG
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