mRNA_H-paniculata_contig8555.16529.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8555.16529.1
Unique NamemRNA_H-paniculata_contig8555.16529.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8555.16529.1 vs. uniprot
Match: A0A7S0E301_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E301_9CRYP)

HSP 1 Score: 88.6 bits (218), Expect = 1.300e-20
Identity = 41/57 (71.93%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   13 GFHKVVGGKALRLFRPEELELLICGNPQLDFLALERNSKYEDGYKRDTPVIKNFWEV 183
            GFH+V GG ALR+F PEELELLICGNP LDF ALE  +  EDGY RD PVI NFW V
Sbjct:   38 GFHEVCGGPALRMFIPEELELLICGNPNLDFHALEEVTSTEDGYTRDHPVILNFWTV 94          
BLAST of mRNA_H-paniculata_contig8555.16529.1 vs. uniprot
Match: A0A7S1DUF8_HEMAN (Hypothetical protein n=4 Tax=Hemiselmis TaxID=77924 RepID=A0A7S1DUF8_HEMAN)

HSP 1 Score: 87.0 bits (214), Expect = 5.870e-19
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   13 GFHKVVGGKALRLFRPEELELLICGNPQLDFLALERNSKYEDGYKRDTPVIKNFWEV 183
            GFH+V GG ALR+F PEELELLICG+P LDFLALE  +  EDG+ RD P+I+ FWE+
Sbjct:  176 GFHEVCGGAALRMFIPEELELLICGSPSLDFLALEEVTSTEDGFTRDHPLIRAFWEI 232          
BLAST of mRNA_H-paniculata_contig8555.16529.1 vs. uniprot
Match: A0A7S4P7K0_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4P7K0_GUITH)

HSP 1 Score: 88.2 bits (217), Expect = 7.270e-19
Identity = 41/57 (71.93%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   13 GFHKVVGGKALRLFRPEELELLICGNPQLDFLALERNSKYEDGYKRDTPVIKNFWEV 183
            GFH+V GG ALR+F PEELELLICGNP LDF ALE  +  EDGY RD PVI NFW V
Sbjct:  678 GFHEVCGGPALRMFIPEELELLICGNPTLDFHALEEVTSTEDGYTRDHPVILNFWTV 734          
BLAST of mRNA_H-paniculata_contig8555.16529.1 vs. uniprot
Match: A0A7S0M4Q2_9CRYP (Hypothetical protein n=2 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M4Q2_9CRYP)

HSP 1 Score: 86.3 bits (212), Expect = 1.200e-18
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 ATRRGFHKVVGGKALRLFRPEELELLICGNPQLDFLALERNSKYEDGYKRDTPVIKNFWEV 183
            A  +GFH+V GG ALR+F PEELELLICG+P LDF ALE  +  EDGY RD PVI+ FWE+
Sbjct:  176 AFAQGFHEVCGGPALRMFVPEELELLICGSPSLDFHALEEVTCTEDGYTRDHPVIRAFWEI 236          
BLAST of mRNA_H-paniculata_contig8555.16529.1 vs. uniprot
Match: A0A7S0CQN2_9EUKA (Hypothetical protein n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CQN2_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 1.360e-18
Identity = 37/61 (60.66%), Postives = 49/61 (80.33%), Query Frame = 1
Query:    1 ATRRGFHKVVGGKALRLFRPEELELLICGNPQLDFLALERNSKYEDGYKRDTPVIKNFWEV 183
            A + GF KV GG AL+LFRPEEL +LICG+ +LDF ALER ++YE GY +DTP+IK+ W++
Sbjct:  676 AFKNGFTKVCGGPALKLFRPEELHMLICGSEELDFDALERKTRYEGGYTKDTPIIKDLWKI 736          
BLAST of mRNA_H-paniculata_contig8555.16529.1 vs. uniprot
Match: A0A5B8ME34_9CHLO (Chromosome condensation regulation protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8ME34_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 1.860e-18
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 ATRRGFHKVVGGKALRLFRPEELELLICGNPQLDFLALERNSKYEDGYKRDTPVIKNFWEV 183
            A  +GFH+V GG AL LFRPEELELL+CG P LDF ALE ++ Y+ GY  D+P++K FWE+
Sbjct:  945 AFSQGFHQVCGGPALALFRPEELELLVCGQPSLDFGALELSTHYDAGYTNDSPIVKAFWEI 1005          
BLAST of mRNA_H-paniculata_contig8555.16529.1 vs. uniprot
Match: A0A7S2DNP5_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DNP5_9EUKA)

HSP 1 Score: 81.6 bits (200), Expect = 4.260e-18
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 ATRRGFHKVVGGKALRLFRPEELELLICGNPQLDFLALERNSKYEDGYKRDTPVIKNFWEV 183
            A +RGFH V GG+ L+LFR EELELLICG+P LDF ALER ++Y+DG+ R  P +   WEV
Sbjct:   15 AFQRGFHSVCGGECLQLFRWEELELLICGSPVLDFEALERATQYDDGFSRQHPTVVIMWEV 75          
BLAST of mRNA_H-paniculata_contig8555.16529.1 vs. uniprot
Match: A0A8J1TCH7_OWEFU (Ofus.G022806 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TCH7_OWEFU)

HSP 1 Score: 85.9 bits (211), Expect = 4.730e-18
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   10 RGFHKVVGGKALRLFRPEELELLICGNPQLDFLALERNSKYEDGYKRDTPVIKNFWEV 183
            RGFHKV G + L LFRP+E+ELL+CGNP+L+F ALE+++ Y DGY  D  +IKNFW +
Sbjct:  925 RGFHKVCGSEMLSLFRPDEIELLVCGNPKLNFSALEKSASYADGYHSDHLIIKNFWSI 982          
BLAST of mRNA_H-paniculata_contig8555.16529.1 vs. uniprot
Match: A0A485L4K2_9STRA (Aste57867_15922 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4K2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 8.770e-18
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 ATRRGFHKVVGGKALRLFRPEELELLICGNPQLDFLALERNSKYEDGYKRDTPVIKNFWEV 183
            A  RGFH V GG AL LFR EELELL+CG+P LDF+ALE  ++Y+DG+  ++PVIK FW V
Sbjct:  563 AFHRGFHLVCGGDALSLFRYEELELLVCGSPDLDFVALEEVTQYDDGFTEESPVIKYFWTV 623          
BLAST of mRNA_H-paniculata_contig8555.16529.1 vs. uniprot
Match: A0A8B7YBB0_ACAPL (ubiquitin-protein ligase E3A-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YBB0_ACAPL)

HSP 1 Score: 85.1 bits (209), Expect = 8.840e-18
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 ATRRGFHKVVGGKALRLFRPEELELLICGNPQLDFLALERNSKYEDGYKRDTPVIKNFWEV 183
            A  RGFH V GG ALRLF+  E E+L+CG+P+LDF+ALE ++ YEDGY R  P IK FW V
Sbjct:  994 AFARGFHTVCGGSALRLFQAAETEMLVCGSPELDFMALEASATYEDGYSRQHPTIKAFWTV 1054          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8555.16529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0E301_9CRYP1.300e-2071.93Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S1DUF8_HEMAN5.870e-1966.67Hypothetical protein n=4 Tax=Hemiselmis TaxID=7792... [more]
A0A7S4P7K0_GUITH7.270e-1971.93Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S0M4Q2_9CRYP1.200e-1865.57Hypothetical protein n=2 Tax=Cryptomonas curvata T... [more]
A0A7S0CQN2_9EUKA1.360e-1860.66Hypothetical protein n=2 Tax=Amorphochlora amoebif... [more]
A0A5B8ME34_9CHLO1.860e-1860.66Chromosome condensation regulation protein n=1 Tax... [more]
A0A7S2DNP5_9EUKA4.260e-1860.66Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A8J1TCH7_OWEFU4.730e-1860.34Ofus.G022806 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A485L4K2_9STRA8.770e-1862.30Aste57867_15922 protein n=1 Tax=Aphanomyces stella... [more]
A0A8B7YBB0_ACAPL8.840e-1860.66ubiquitin-protein ligase E3A-like n=1 Tax=Acanthas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8555contigH-paniculata_contig8555:9091..9285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue2e-15
Seed eggNOG ortholog227086.JGI_V11_53683
KEGG koko:K10587,ko:K10614,ko:K10615
KEGG Pathwayko04120,ko05165,ko05203,map04120,map05165,map05203
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0941@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931075.7857425-CDS-H-paniculata_contig8555:9090..92851622931075.7857425-CDS-H-paniculata_contig8555:9090..9285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8555 9091..9285 -
1691481578.7568467-CDS-H-paniculata_contig8555:9090..92851691481578.7568467-CDS-H-paniculata_contig8555:9090..9285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8555 9091..9285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8555.16529.1prot_H-paniculata_contig8555.16529.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8555 9091..9285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8555.16529.1

>prot_H-paniculata_contig8555.16529.1 ID=prot_H-paniculata_contig8555.16529.1|Name=mRNA_H-paniculata_contig8555.16529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
ATRRGFHKVVGGKALRLFRPEELELLICGNPQLDFLALERNSKYEDGYKR
DTPVIKNFWEVGLA*
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mRNA from alignment at H-paniculata_contig8555:9091..9285-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8555.16529.1 ID=mRNA_H-paniculata_contig8555.16529.1|Name=mRNA_H-paniculata_contig8555.16529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig8555:9091..9285- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTACACGCAGGGGTTTCCACAAGGTGGTGGGCGGCAAGGCTTTGAGGCT GTTCCGCCCCGAGGAGCTTGAGCTGCTCATTTGCGGGAATCCGCAGCTGG ACTTCTTGGCGTTGGAACGAAACTCGAAGTACGAGGATGGCTACAAGCGA GACACCCCTGTCATCAAAAACTTTTGGGAGGTAGGTTTAGCTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8555:9091..9285-

>mRNA_H-paniculata_contig8555.16529.1 ID=mRNA_H-paniculata_contig8555.16529.1|Name=mRNA_H-paniculata_contig8555.16529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig8555:9091..9285- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTACACGCAGGGGTTTCCACAAGGTGGTGGGCGGCAAGGCTTTGAGGCT
GTTCCGCCCCGAGGAGCTTGAGCTGCTCATTTGCGGGAATCCGCAGCTGG
ACTTCTTGGCGTTGGAACGAAACTCGAAGTACGAGGATGGCTACAAGCGA
GACACCCCTGTCATCAAAAACTTTTGGGAGGTAGGTTTAGCTTAGGCTAC
ACGCAGGGGTTTCCACAAGGTGGTGGGCGGCAAGGCTTTGAGGCTGTTCC
GCCCCGAGGAGCTTGAGCTGCTCATTTGCGGGAATCCGCAGCTGGACTTC
TTGGCGTTGGAACGAAACTCGAAGTACGAGGATGGCTACAAGCGAGACAC
CCCTGTCATCAAAAACTTTTGGGAGGTAGGTTTAGCTTAG
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