mRNA_H-paniculata_contig8555.16528.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8555.16528.1
Unique NamemRNA_H-paniculata_contig8555.16528.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8555.16528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8555contigH-paniculata_contig8555:6280..6843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size565
Cds size429
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931075.7135417-UTR-H-paniculata_contig8555:6279..64141622931075.7135417-UTR-H-paniculata_contig8555:6279..6414Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8555 6280..6414 +
1691481578.733664-UTR-H-paniculata_contig8555:6279..64141691481578.733664-UTR-H-paniculata_contig8555:6279..6414Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8555 6280..6414 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931075.7304268-CDS-H-paniculata_contig8555:6414..68431622931075.7304268-CDS-H-paniculata_contig8555:6414..6843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8555 6415..6843 +
1691481578.742314-CDS-H-paniculata_contig8555:6414..68431691481578.742314-CDS-H-paniculata_contig8555:6414..6843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8555 6415..6843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8555.16528.1prot_H-paniculata_contig8555.16528.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8555 6415..6843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8555.16528.1

>prot_H-paniculata_contig8555.16528.1 ID=prot_H-paniculata_contig8555.16528.1|Name=mRNA_H-paniculata_contig8555.16528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
MGVGYCVRTLVKNAAATKPMVTCTTYKQLYLMQQRINHLVHQLGHDKTYT
NTCITTTNSSSIDRQHLRRRHGNTAHNPIKDYPRAKLRKYTTYDKKPRQH
TCTELEIQLSSDTDTLSSHNTADLPVDELTKLGGTGGESLKAF
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mRNA from alignment at H-paniculata_contig8555:6280..6843+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8555.16528.1 ID=mRNA_H-paniculata_contig8555.16528.1|Name=mRNA_H-paniculata_contig8555.16528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=564bp|location=Sequence derived from alignment at H-paniculata_contig8555:6280..6843+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACGATTGGTGTCTGCTTGGACACAAGTGCGGTGTGTACGCGGCGCACC
AACAAGCGCTTGATCCCCTGTCGCCCACCCTGTTTTGCTTCTCCCACAGG
CTGAAGTACAACCATACTGTACAGGTGAGTTAAGTATGGGTGTGGGATAT
TGTGTGAGAACGCTCGTGAAAAACGCTGCAGCAACCAAACCCATGGTAAC
GTGTACAACATACAAACAACTTTACCTCATGCAGCAAAGGATCAACCACC
TTGTGCATCAACTGGGTCATGATAAAACATACACCAACACATGCATTACC
ACCACCAACAGCAGCAGTATAGACAGACAGCATCTACGCCGCCGCCACGG
AAACACAGCCCATAACCCTATAAAAGACTATCCAAGGGCAAAGCTACGAA
AATATACAACGTACGATAAGAAACCGCGACAACATACATGCACGGAATTG
GAGATACAATTGAGCTCAGATACCGACACGCTCAGCTCCCACAATACCGC
TGACTTACCTGTCGACGAACTGACCAAATTAGGAGGGACAGGGGGCGAGT
CATTGAAGGCCTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig8555:6280..6843+

>mRNA_H-paniculata_contig8555.16528.1 ID=mRNA_H-paniculata_contig8555.16528.1|Name=mRNA_H-paniculata_contig8555.16528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig8555:6280..6843+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGTGGGATATTGTGTGAGAACGCTCGTGAAAAACGCTGCAGCAAC
CAAACCCATGGTAACGTGTACAACATACAAACAACTTTACCTCATGCAGC
AAAGGATCAACCACCTTGTGCATCAACTGGGTCATGATAAAACATACACC
AACACATGCATTACCACCACCAACAGCAGCAGTATAGACAGACAGCATCT
ACGCCGCCGCCACGGAAACACAGCCCATAACCCTATAAAAGACTATCCAA
GGGCAAAGCTACGAAAATATACAACGTACGATAAGAAACCGCGACAACAT
ACATGCACGGAATTGGAGATACAATTGAGCTCAGATACCGACACGCTCAG
CTCCCACAATACCGCTGACTTACCTGTCGACGAACTGACCAAATTAGGAG
GGACAGGGGGCGAGTCATTGAAGGCCTTCATGGGTGTGGGATATTGTGTG
AGAACGCTCGTGAAAAACGCTGCAGCAACCAAACCCATGGTAACGTGTAC
AACATACAAACAACTTTACCTCATGCAGCAAAGGATCAACCACCTTGTGC
ATCAACTGGGTCATGATAAAACATACACCAACACATGCATTACCACCACC
AACAGCAGCAGTATAGACAGACAGCATCTACGCCGCCGCCACGGAAACAC
AGCCCATAACCCTATAAAAGACTATCCAAGGGCAAAGCTACGAAAATATA
CAACGTACGATAAGAAACCGCGACAACATACATGCACGGAATTGGAGATA
CAATTGAGCTCAGATACCGACACGCTCAGCTCCCACAATACCGCTGACTT
ACCTGTCGACGAACTGACCAAATTAGGAGGGACAGGGGGCGAGTCATTGA
AGGCCTTC
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