mRNA_H-paniculata_contig8544.16518.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8544.16518.1
Unique NamemRNA_H-paniculata_contig8544.16518.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8544.16518.1 vs. uniprot
Match: D7FP73_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP73_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.530e-10
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 3 
Query:  438 RPIAVVIGGFLCA----QPRSGSFWRIPMAALEAHGFRVILVKPTPVGSLHDR 584
            +P+ V IGGFLC       R  SFWRIP AALE  GFRV+ V P+PVGSLHDR
Sbjct:    9 KPVVVAIGGFLCGGGDLNGRVYSFWRIPSAALEGQGFRVVTVSPSPVGSLHDR 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8544.16518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP73_ECTSI1.530e-1062.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8544contigH-paniculata_contig8544:8705..9735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue3.2e-10
Seed eggNOG ortholog2880.D7FP73
Hectar predicted targeting categoryother localisation
EggNOG free text desc.palmitoyl-(protein) hydrolase activity
EggNOG OGs2QPNZ@2759,COG1075@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size602
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8544.16518.1prot_H-paniculata_contig8544.16518.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8544 8705..9214 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.8851788-CDS-H-paniculata_contig8544:8704..88041622931073.8851788-CDS-H-paniculata_contig8544:8704..8804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8544 8705..8804 -
1691481577.9939735-CDS-H-paniculata_contig8544:8704..88041691481577.9939735-CDS-H-paniculata_contig8544:8704..8804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8544 8705..8804 -
1622931073.9280322-CDS-H-paniculata_contig8544:9068..92141622931073.9280322-CDS-H-paniculata_contig8544:9068..9214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8544 9069..9214 -
1691481578.0066214-CDS-H-paniculata_contig8544:9068..92141691481578.0066214-CDS-H-paniculata_contig8544:9068..9214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8544 9069..9214 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.9440134-UTR-H-paniculata_contig8544:9214..93461622931073.9440134-UTR-H-paniculata_contig8544:9214..9346Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8544 9215..9346 -
1691481578.0168304-UTR-H-paniculata_contig8544:9214..93461691481578.0168304-UTR-H-paniculata_contig8544:9214..9346Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8544 9215..9346 -
1622931073.9583728-UTR-H-paniculata_contig8544:9511..97351622931073.9583728-UTR-H-paniculata_contig8544:9511..9735Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8544 9512..9735 -
1691481578.0276167-UTR-H-paniculata_contig8544:9511..97351691481578.0276167-UTR-H-paniculata_contig8544:9511..9735Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8544 9512..9735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8544.16518.1

>prot_H-paniculata_contig8544.16518.1 ID=prot_H-paniculata_contig8544.16518.1|Name=mRNA_H-paniculata_contig8544.16518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MRWSPLSSGHGSAAGPKEEFSTQNGDLRPIAVVIGGFLCAQPRSGSFWRI
PMAALEAHGFRVILVKPTPVGSLHDRWGTKF*
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mRNA from alignment at H-paniculata_contig8544:8705..9735-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8544.16518.1 ID=mRNA_H-paniculata_contig8544.16518.1|Name=mRNA_H-paniculata_contig8544.16518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1031bp|location=Sequence derived from alignment at H-paniculata_contig8544:8705..9735- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTTATAGTGGGAGGAACGCAGGACTGTGACGCATCTTTGACAAGATG
CGGGGTGTGCACCTGTCCATACTAGAAGAAACAAGAGTGCACAGTCCTGG
CTGCCTCCAGCTCGAGAGATCGCTGCCAGTGGATTCTAGGAAGTAGCGTG
GACAGCTCTCGCTGGGGCACATATACAGCTGTATCAGTCTAAACCTGAAA
CCGTTAAAAGTGCAACAGATTCAGGTGCTCAGGGCAGGTAGGACGGTTTC
TTGTTTTCGGTTTTCGTTCTGCAGACAAGGCGCATGCGATGCGTAGAGGT
ATAGGCATACAGTTGGTATGGTGTGCTCTCCGCGCTTCACTCCTTCACTC
TTACCTCACAGCATTAACTTCCCTTGACACTACCTGCAGGAGCTGGCCCT
GTGCGGCCAACGAAGGTGCGCAACGCTCATGTATATTTACAGACGTATCT
CTCACGTGTCTTAAAACAAGACAGCCAGAAAATAGAAGCTGTACCGTCCA
GTCACAACACGTGTCATCACCATGCGTTGGTCGCCCCTCTCTAGCGGCCA
TGGGTCCGCTGCTGGTCCGAAGGAGGAGTTCAGCACGCAGAATGGGGACC
TAAGACCTATCGCGGTGGTAATCGGGGGCTTCCTGTGCGCACAGCCTCGA
AGCGGATCTTTCTGGCGGTGAGATGACACCTCTGTCCTTCCTTTGGATAC
CACCGTACGCAGAACAATAGATATGTTTTGGCTATGCTGTTTGATCTGGT
TCCCTCAATATTCAATAATGATTCTGGATTCGATCTTGTCTGTACTGTAC
TCTACTGTACTCAGAGTTTCGTTGTACCGGCATTCATGTACTGATTGCAT
ACATGAGAAAAAGTGCTCCTCAAAATGTGGGTTGGGCTGCTTGACATACA
GAACTATGCTGCTAATCCCATGCTGAATCAGGATACCCATGGCTGCATTG
GAAGCTCACGGATTTCGCGTCATACTGGTTAAACCTACTCCGGTTGGCTC
CCTGCATGACAGGTGGGGTACTAAATTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8544:8705..9735-

>mRNA_H-paniculata_contig8544.16518.1 ID=mRNA_H-paniculata_contig8544.16518.1|Name=mRNA_H-paniculata_contig8544.16518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig8544:8705..9735- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTTGGTCGCCCCTCTCTAGCGGCCATGGGTCCGCTGCTGGTCCGAA
GGAGGAGTTCAGCACGCAGAATGGGGACCTAAGACCTATCGCGGTGGTAA
TCGGGGGCTTCCTGTGCGCACAGCCTCGAAGCGGATCTTTCTGGCGATGC
GTTGGTCGCCCCTCTCTAGCGGCCATGGGTCCGCTGCTGGTCCGAAGGAG
GAGTTCAGCACGCAGAATGGGGACCTAAGACCTATCGCGGTGGTAATCGG
GGGCTTCCTGTGCGCACAGCCTCGAAGCGGATCTTTCTGGCGGATACCCA
TGGCTGCATTGGAAGCTCACGGATTTCGCGTCATACTGGTTAAACCTACT
CCGGTTGGCTCCCTGCATGACAGGTGGGGTACTAAATTTTAGGATACCCA
TGGCTGCATTGGAAGCTCACGGATTTCGCGTCATACTGGTTAAACCTACT
CCGGTTGGCTCCCTGCATGACAGGTGGGGTACTAAATTTTAG
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