mRNA_H-paniculata_contig8544.16517.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8544.16517.1
Unique NamemRNA_H-paniculata_contig8544.16517.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8544.16517.1 vs. uniprot
Match: D7FP73_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP73_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 3.340e-31
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1
Query:    1 RACQAFYQLKGGTVCYGQEHSRLHGHDCHGETYP-GIIPAWGAGSPVHIVGHSYGGQTARVLQHLIAIG 204
            RAC+ FY+LKGGTVCYGQEHSR HGH CHGETY  G+  AWG  +PVH++GHSYGGQTARVLQHL+A G
Sbjct:   61 RACEIFYELKGGTVCYGQEHSRAHGHACHGETYDVGLFSAWGKDNPVHVIGHSYGGQTARVLQHLLATG 129          
BLAST of mRNA_H-paniculata_contig8544.16517.1 vs. uniprot
Match: A0A1Y1Z2V7_9FUNG (Alpha/beta-hydrolase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z2V7_9FUNG)

HSP 1 Score: 92.4 bits (228), Expect = 1.530e-20
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 RACQAFYQLKGGTVCYGQEHSRLHGHDCHGETYPGIIPAWGAGSPVHIVGHSYGGQTARVLQHLI 195
            RAC+ FYQLKGGTV YGQEHSR  GH  +G+TY G+ P W +  P+H +GHSYGG TA  LQ  +
Sbjct:   53 RACELFYQLKGGTVDYGQEHSRQFGHQRYGKTYQGLYPEWSSAKPLHFIGHSYGGNTAWYLQQFL 117          
BLAST of mRNA_H-paniculata_contig8544.16517.1 vs. uniprot
Match: L1IA24_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IA24_GUITC)

HSP 1 Score: 87.4 bits (215), Expect = 1.170e-19
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 RACQAFYQLKGGTVCYGQEHSRLHGHDCHGETYPGIIPAWGAGSPVHIVGHSYGGQTARVLQHLI 195
            RAC+ FYQ+KGG V YG+EHS+  GH  +G  YPG+   W +  P+H++GHS GG TAR LQHL+
Sbjct:   15 RACEVFYQIKGGKVDYGEEHSQRFGHARYGRLYPGLFSEWSSERPIHMLGHSLGGATARYLQHLL 79          
BLAST of mRNA_H-paniculata_contig8544.16517.1 vs. uniprot
Match: A0A7S0Z4I7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z4I7_9CRYP)

HSP 1 Score: 84.3 bits (207), Expect = 1.380e-19
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 RACQAFYQLKGGTVCYGQEHSRLHGHDCHGETYPGIIPAWGAGSPVHIVGHSYGGQTARVLQHLI 195
            RAC+ F Q+KGG V YG+EHS   GH  +G  Y G+ P W A +P+H+VGHS GG T R+LQHL+
Sbjct:    7 RACEVFAQIKGGVVDYGKEHSERCGHARYGRCYQGLYPHWDAHNPIHLVGHSLGGTTGRMLQHLL 71          
BLAST of mRNA_H-paniculata_contig8544.16517.1 vs. uniprot
Match: A0A482RNS2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNS2_9ARCH)

HSP 1 Score: 85.1 bits (209), Expect = 1.140e-18
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 RACQAFYQLKGGTVCYGQEHSRLHGHDCHGETYPGIIPAWGAGSPVHIVGHSYGGQTARVLQHLIAI 201
            R CQ FY+LKGGTV YG+EHS  HGHD  G  +PG+   W    P++++GHS+GG TA  LQ+ +A+
Sbjct:   62 RVCQTFYELKGGTVDYGEEHSTFHGHDRFGRHFPGLCIDWDEDHPIYLIGHSFGGLTAWALQNYLAL 128          
BLAST of mRNA_H-paniculata_contig8544.16517.1 vs. uniprot
Match: UPI00197E40D7 (lipase n=1 Tax=Longirhabdus pacifica TaxID=2305227 RepID=UPI00197E40D7)

HSP 1 Score: 87.4 bits (215), Expect = 1.440e-18
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    1 RACQAFYQLKGGTVCYGQEHSRLHGHDCHGETYPGIIPAWGAGSP-------VHIVGHSYGGQTARVLQHLIAIGE 207
            RAC+ + Q+KGGTV YG+ HS+LHGHD +G TY G+ P WG  +P       VH++GHS GGQT RVL  L++ G 
Sbjct:  134 RACELYAQIKGGTVDYGEAHSKLHGHDRYGITYEGLYPEWGEINPETGEVNKVHLIGHSMGGQTIRVLTELLSDGH 209          
BLAST of mRNA_H-paniculata_contig8544.16517.1 vs. uniprot
Match: K4ZA05_PAEA2 (Lipase Lip n=11 Tax=Paenibacillus TaxID=44249 RepID=K4ZA05_PAEA2)

HSP 1 Score: 85.5 bits (210), Expect = 6.290e-18
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 RACQAFYQLKGGTVCYGQEHSRLHGHDCHGETYPGIIPAWGAGSP-------VHIVGHSYGGQTARVLQHLIAIGE 207
            RAC+ + Q+KGGTV YG+ HS L+GH+ +G +Y G+ P+WG   P       +H++GHS GGQTAR+L HL+  G+
Sbjct:   98 RACELYAQIKGGTVDYGKAHSELYGHERYGRSYEGLYPSWGEIDPNTGRPKQIHVIGHSMGGQTARMLIHLLEKGD 173          
BLAST of mRNA_H-paniculata_contig8544.16517.1 vs. uniprot
Match: A0A2P6NC96_9EUKA (Lipase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NC96_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 6.650e-18
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 RACQAFYQLKGGTVCYGQEHSRLHGHDCHGETYPGIIPAWGAGSPVHIVGHSYGGQTARVLQHLIAIGE 207
            RAC+ FYQ+KGG   YG+EHS   GH  +G+T+PG+ P W    P+H++GHS GG T  +LQH++A  +
Sbjct:  101 RACEIFYQIKGGRTDYGKEHSDEFGHQRYGKTHPGLYPEWDKDHPIHVLGHSLGGCTGAMLQHMLATNQ 169          
BLAST of mRNA_H-paniculata_contig8544.16517.1 vs. uniprot
Match: A0A1Y1IA70_KLENI (Triacylglycerol Lipase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IA70_KLENI)

HSP 1 Score: 85.5 bits (210), Expect = 7.480e-18
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    1 RACQAFYQLKGGTVCYGQEHSRLHGHDCHGETYPGIIPAWGAGSPVHIVGHSYGGQTARVLQHLIAIGE 207
            RAC+ FYQ+KGGTV YG+ HSR  GH  +G+T+ G  P W    PVH VGHS G QT R+L  ++A GE
Sbjct:  147 RACELFYQIKGGTVDYGEAHSRACGHKRYGKTWDGFYPNWDENHPVHFVGHSSGAQTIRLLHTMLAEGE 215          
BLAST of mRNA_H-paniculata_contig8544.16517.1 vs. uniprot
Match: A0A2H3IVJ3_WOLCO ((4-O-methyl)-D-glucuronate--lignin esterase n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3IVJ3_WOLCO)

HSP 1 Score: 85.1 bits (209), Expect = 7.620e-18
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 RACQAFYQLKGGTVCYGQEHSRLHGHDCHGETYP-GIIPAWGAGSPVHIVGHSYGGQTARVLQHLI 195
            RAC+ FY L+GGTV YG+EHS+LHGHD +G T+  G+ P W    P+H +GHS GG T   LQHLI
Sbjct:   62 RACELFYALRGGTVDYGEEHSKLHGHDRYGRTHTSGLYPEWSERMPLHFLGHSLGGPTILKLQHLI 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8544.16517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP73_ECTSI3.340e-3175.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Y1Z2V7_9FUNG1.530e-2060.00Alpha/beta-hydrolase n=1 Tax=Basidiobolus meristos... [more]
L1IA24_GUITC1.170e-1955.38Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S0Z4I7_9CRYP1.380e-1955.38Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A482RNS2_9ARCH1.140e-1852.24Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
UPI00197E40D71.440e-1852.63lipase n=1 Tax=Longirhabdus pacifica TaxID=2305227... [more]
K4ZA05_PAEA26.290e-1848.68Lipase Lip n=11 Tax=Paenibacillus TaxID=44249 RepI... [more]
A0A2P6NC96_9EUKA6.650e-1849.28Lipase n=1 Tax=Planoprotostelium fungivorum TaxID=... [more]
A0A1Y1IA70_KLENI7.480e-1855.07Triacylglycerol Lipase n=1 Tax=Klebsormidium niten... [more]
A0A2H3IVJ3_WOLCO7.620e-1857.58(4-O-methyl)-D-glucuronate--lignin esterase n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8544contigH-paniculata_contig8544:342..551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1e-25
Seed eggNOG ortholog2880.D7FP73
Hectar predicted targeting categoryother localisation
EggNOG free text desc.palmitoyl-(protein) hydrolase activity
EggNOG OGs2QPNZ@2759,COG1075@1
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-08_000590.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.8373277-CDS-H-paniculata_contig8544:341..5511622931073.8373277-CDS-H-paniculata_contig8544:341..551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8544 342..551 -
1691481577.981161-CDS-H-paniculata_contig8544:341..5511691481577.981161-CDS-H-paniculata_contig8544:341..551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8544 342..551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8544.16517.1prot_H-paniculata_contig8544.16517.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8544 342..551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8544.16517.1

>prot_H-paniculata_contig8544.16517.1 ID=prot_H-paniculata_contig8544.16517.1|Name=mRNA_H-paniculata_contig8544.16517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
RACQAFYQLKGGTVCYGQEHSRLHGHDCHGETYPGIIPAWGAGSPVHIVG
HSYGGQTARVLQHLIAIGE*
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mRNA from alignment at H-paniculata_contig8544:342..551-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8544.16517.1 ID=mRNA_H-paniculata_contig8544.16517.1|Name=mRNA_H-paniculata_contig8544.16517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig8544:342..551- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCTTGTCAGGCGTTTTACCAGCTGAAAGGCGGGACTGTGTGCTACGG TCAGGAGCATTCGCGGTTACACGGCCATGACTGCCACGGAGAAACATATC CCGGGATTATCCCGGCTTGGGGAGCAGGCTCTCCTGTTCATATCGTCGGC CACAGTTACGGTGGACAGACCGCGAGGGTGCTCCAACACCTCATAGCAAT CGGTGAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8544:342..551-

>mRNA_H-paniculata_contig8544.16517.1 ID=mRNA_H-paniculata_contig8544.16517.1|Name=mRNA_H-paniculata_contig8544.16517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig8544:342..551- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCTTGTCAGGCGTTTTACCAGCTGAAAGGCGGGACTGTGTGCTACGG
TCAGGAGCATTCGCGGTTACACGGCCATGACTGCCACGGAGAAACATATC
CCGGGATTATCCCGGCTTGGGGAGCAGGCTCTCCTGTTCATATCGTCGGC
CACAGTTACGGTGGACAGACCGCGAGGGTGCTCCAACACCTCATAGCAAT
CGGTGAGTAGAGGGCTTGTCAGGCGTTTTACCAGCTGAAAGGCGGGACTG
TGTGCTACGGTCAGGAGCATTCGCGGTTACACGGCCATGACTGCCACGGA
GAAACATATCCCGGGATTATCCCGGCTTGGGGAGCAGGCTCTCCTGTTCA
TATCGTCGGCCACAGTTACGGTGGACAGACCGCGAGGGTGCTCCAACACC
TCATAGCAATCGGTGAGTAG
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