mRNA_H-paniculata_contig8538.16510.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8538.16510.1
Unique NamemRNA_H-paniculata_contig8538.16510.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8538.16510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8538contigH-paniculata_contig8538:8066..8994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size294
Cds size162
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8538.16510.1prot_H-paniculata_contig8538.16510.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8538 8090..8886 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931072.6881006-UTR-H-paniculata_contig8538:8065..80891622931072.6881006-UTR-H-paniculata_contig8538:8065..8089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8538 8066..8089 -
1691481577.4851546-UTR-H-paniculata_contig8538:8065..80891691481577.4851546-UTR-H-paniculata_contig8538:8065..8089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8538 8066..8089 -
1622931072.740701-UTR-H-paniculata_contig8538:8886..89941622931072.740701-UTR-H-paniculata_contig8538:8886..8994Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8538 8887..8994 -
1691481577.5177472-UTR-H-paniculata_contig8538:8886..89941691481577.5177472-UTR-H-paniculata_contig8538:8886..8994Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8538 8887..8994 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931072.7073488-CDS-H-paniculata_contig8538:8089..80901622931072.7073488-CDS-H-paniculata_contig8538:8089..8090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8538 8090..8090 -
1691481577.4980567-CDS-H-paniculata_contig8538:8089..80901691481577.4980567-CDS-H-paniculata_contig8538:8089..8090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8538 8090..8090 -
1622931072.7249613-CDS-H-paniculata_contig8538:8725..88861622931072.7249613-CDS-H-paniculata_contig8538:8725..8886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8538 8726..8886 -
1691481577.5081687-CDS-H-paniculata_contig8538:8725..88861691481577.5081687-CDS-H-paniculata_contig8538:8725..8886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8538 8726..8886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8538.16510.1

>prot_H-paniculata_contig8538.16510.1 ID=prot_H-paniculata_contig8538.16510.1|Name=mRNA_H-paniculata_contig8538.16510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
MANAFRPSSLSSQFLPRTDGLSAKDAGLAGVVMLVAKLAPQTALEAARES
YSC*
back to top

mRNA from alignment at H-paniculata_contig8538:8066..8994-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8538.16510.1 ID=mRNA_H-paniculata_contig8538.16510.1|Name=mRNA_H-paniculata_contig8538.16510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=929bp|location=Sequence derived from alignment at H-paniculata_contig8538:8066..8994- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAGTTGTCTGGGATATTGGTCGCCAACTCCAAATTGCTCCACCAACTC
TGGCCCAACGCCATTCGGAAGCCCTTCCTTACCGGGAAGTAGCGCTAAAG
CGTAACGTATGGCCAACGCGTTTCGACCTTCCTCGCTCAGCTCGCAATTT
TTACCTCGGACTGATGGACTCTCGGCTAAAGATGCCGGACTCGCCGGAGT
GGTAATGTTAGTTGCGAAACTCGCGCCGCAGACGGCCCTGGAGGCTGCAC
GAGAGTCGTACAGCTGTTGGTGAGGTGCTGGGATGTTGTGTGACGATAGG
GGGCGCTTTGTCCGCCGCTGGGCGTAGCGCAGCCACTCGAAATGGAGCCG
AAATCGGTCGTTGTTTTAGTTCCGCTTCTCAGAATTTTTCGGAACTATTT
CGGAACAATATGCGATAGCGAAATAATAATTCTTAATTTTTACACCCGTG
GGTTCAATTGAAGCCATAGATTACCGAAAACTCTTCGTATTCGTACAGAA
ACAGCCTACACAAGAAATGAGAAATTGTAACGTCGCAGACTCATGGGACG
GAAAGAGTAGGAGGATTGTGTAATTGGCATCAGTATCCTAAATACGCGAT
ACTTTGACGCATGAAACATTGCCCCGAGGCGCCTGTCGCGTTTGGCTTTT
TTTGCAAGTGCAGGAACTCTATTTTGTGTGGTAGTGCATGGTGCGGCGTG
CCGCATTGGCAAAGAGCTGACTGTGTGGACTTTACAGCTTTCTCACATCC
ACGTGTTGGTGCTGTTTTTCAATACACACAACAGCCGAATAACCGAGGGA
TGTTGGACTCTTGTTATCTCTTATTGGGGCTGCTACTCGTGTTGGTGCTG
GTGCCGCTGCTTTCAATCCGCTTTTCTCGCACTTTTGTTGTTTTGTCATT
TTAGACGCTGCGAAAAACGCTGTTCAAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8538:8066..8994-

>mRNA_H-paniculata_contig8538.16510.1 ID=mRNA_H-paniculata_contig8538.16510.1|Name=mRNA_H-paniculata_contig8538.16510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig8538:8066..8994- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCAACGCGTTTCGACCTTCCTCGCTCAGCTCGCAATTTTTACCTCG
GACTGATGGACTCTCGGCTAAAGATGCCGGACTCGCCGGAGTGGTAATGT
TAGTTGCGAAACTCGCGCCGCAGACGGCCCTGGAGGCTGCACGAGAGTCG
TACAGCTGTTGATGGCCAACGCGTTTCGACCTTCCTCGCTCAGCTCGCAA
TTTTTACCTCGGACTGATGGACTCTCGGCTAAAGATGCCGGACTCGCCGG
AGTGGTAATGTTAGTTGCGAAACTCGCGCCGCAGACGGCCCTGGAGGCTG
CACGAGAGTCGTACAGCTGTTGAA
back to top