mRNA_H-paniculata_contig8537.16508.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8537.16508.1
Unique NamemRNA_H-paniculata_contig8537.16508.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8537.16508.1 vs. uniprot
Match: D7FN01_ECTSI (Hpt domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN01_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.030e-32
Identity = 66/112 (58.93%), Postives = 83/112 (74.11%), Query Frame = 3 
Query:    3 CSGDMSFLEELLVDLWTESGEHAQQLRDSVPRGKCLEVQHEAHSIKGAAANLMCHRLRSAALFLEKAGFVGTKLIEGAPEAPIVHKAMVLGMKILEDELVTLSGVLKDKNLI 338
            CSGD+SFLEELLVDLW ES  H +QLR+ +PRG   + QHEAHSIKGAAANLMCHRLR +AL+LE+AG VGT+L EG+ +   V + +  G ++LE EL     +LK K L+
Sbjct:   47 CSGDVSFLEELLVDLWNESNAHMEQLREFIPRGAMRDTQHEAHSIKGAAANLMCHRLRLSALYLERAGQVGTRLQEGSSDFNSVKEDLKKGQQVLERELSLFQDLLKKKKLV 158
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BLAST of mRNA_H-paniculata_contig8537.16508.1 vs. uniprot
Match: A0A7S2XTL1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTL1_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 7.870e-18
Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = 3 
Query:   12 DMSFLEELLVDLWTESGEHAQQLRDSVPRGKCLEVQHEAHSIKGAAANLMCHRLRSAALFLEKAGFVGTKLIEGAPEAPIVHKAMVLGMKILEDELVTLSGVLKDKNLI 338
            D  FL ELL DL+ E+  H + L+ SVP      V+ +AHSIKGAAANLMCHRLR AALFLEKAG  GTK   G      +++ +  G++ L  E  +   VLK+K LI
Sbjct:  113 DEEFLHELLGDLFNETQAHVESLKASVPSRDTETVRQKAHSIKGAAANLMCHRLREAALFLEKAGMSGTK---GELTGDALNQTLDKGLEALLTEFDSFGKVLKEKELI 218
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BLAST of mRNA_H-paniculata_contig8537.16508.1 vs. uniprot
Match: A0A835Z3I2_9STRA (Hpt domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.120e-14
Identity = 45/112 (40.18%), Postives = 62/112 (55.36%), Query Frame = 3 
Query:    3 CSGDMSFLEELLVDLWTESGEHAQQLRDSVPRGKCLEVQHEAHSIKGAAANLMCHRLRSAALFLEKAGFVGTKLIEGAPEAPIVHKAMVLGMKILEDELVTLSGVLKDKNLI 338
            C GD  FL+ELLVDLWTES  H ++L+ +VP     E ++ AH++KGAA NLMC  L  A L LEK    GT  I        + +AM   + +++ E+      L  + LI
Sbjct:   31 CGGDEEFLKELLVDLWTESSSHLEELQSTVPARNITETRNIAHTMKGAAGNLMCFALHHACLTLEKTAHEGTSTIPTEQ----LFEAMKDALVVIQGEMARFEEYLHKRALI 138
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BLAST of mRNA_H-paniculata_contig8537.16508.1 vs. uniprot
Match: A0A6S9GU07_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GU07_HETAK)

HSP 1 Score: 68.6 bits (166), Expect = 4.280e-10
Identity = 44/119 (36.97%), Postives = 61/119 (51.26%), Query Frame = 3 
Query:    3 CSGDMSFLEELLVDLWTESGEHAQQLRDSVPR--------GKCLEVQHEAHSIKGAAANLMCHRLRSAALFLEKAGFVGTKLIEGAPEAPIVHKAMVLGMKILEDELVTLSGVLKDKNL 335
            C+GD  FL+ELL D   E+  H Q L+ +V           +   ++  AHSIKGAAANLMC++LR AA  LEK G  G   + G  E     +    G+  LE E+  L   L ++ +
Sbjct:   23 CAGDEEFLQELLQDFSVETAAHFQALQKAVDALTPEDTAGDEADAIRRAAHSIKGAAANLMCNKLRDAAQSLEKTGMQG---VSGEIEGDSFIELATEGLATLESEVKALDEELAERGI 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8537.16508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FN01_ECTSI1.030e-3258.93Hpt domain protein n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S2XTL1_9STRA7.870e-1849.54Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z3I2_9STRA1.120e-1440.18Hpt domain protein n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6S9GU07_HETAK4.280e-1036.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8537contigH-paniculata_contig8537:2639..6882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue3.3e-26
Seed eggNOG ortholog2880.D7FN01
Hectar predicted targeting categoryother localisation
EggNOG OGs2EUJB@1,2SWQ8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2008
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8537.16508.1prot_H-paniculata_contig8537.16508.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8537 4365..6868 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931072.4412808-UTR-H-paniculata_contig8537:2638..37611622931072.4412808-UTR-H-paniculata_contig8537:2638..3761Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8537 2639..3761 -
1691481577.4190993-UTR-H-paniculata_contig8537:2638..37611691481577.4190993-UTR-H-paniculata_contig8537:2638..3761Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8537 2639..3761 -
1622931072.4606595-UTR-H-paniculata_contig8537:3820..43641622931072.4606595-UTR-H-paniculata_contig8537:3820..4364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8537 3821..4364 -
1691481577.4303653-UTR-H-paniculata_contig8537:3820..43641691481577.4303653-UTR-H-paniculata_contig8537:3820..4364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8537 3821..4364 -
1622931072.641429-UTR-H-paniculata_contig8537:6868..68821622931072.641429-UTR-H-paniculata_contig8537:6868..6882Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8537 6869..6882 -
1691481577.475585-UTR-H-paniculata_contig8537:6868..68821691481577.475585-UTR-H-paniculata_contig8537:6868..6882Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8537 6869..6882 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931072.4758725-CDS-H-paniculata_contig8537:4364..44741622931072.4758725-CDS-H-paniculata_contig8537:4364..4474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8537 4365..4474 -
1691481577.4426353-CDS-H-paniculata_contig8537:4364..44741691481577.4426353-CDS-H-paniculata_contig8537:4364..4474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8537 4365..4474 -
1622931072.49048-CDS-H-paniculata_contig8537:5844..59651622931072.49048-CDS-H-paniculata_contig8537:5844..5965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8537 5845..5965 -
1691481577.4559903-CDS-H-paniculata_contig8537:5844..59651691481577.4559903-CDS-H-paniculata_contig8537:5844..5965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8537 5845..5965 -
1622931072.6267745-CDS-H-paniculata_contig8537:6772..68681622931072.6267745-CDS-H-paniculata_contig8537:6772..6868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8537 6773..6868 -
1691481577.4669642-CDS-H-paniculata_contig8537:6772..68681691481577.4669642-CDS-H-paniculata_contig8537:6772..6868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8537 6773..6868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8537.16508.1

>prot_H-paniculata_contig8537.16508.1 ID=prot_H-paniculata_contig8537.16508.1|Name=mRNA_H-paniculata_contig8537.16508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MSFLEELLVDLWTESGEHAQQLRDSVPRGKCLEVQHEAHSIKGAAANLMC
HRLRSAALFLEKAGFVGTKLIEGAPEAPIVHKAMVLGMKILEDELVTLSG
VLKDKNLI*
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mRNA from alignment at H-paniculata_contig8537:2639..6882-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8537.16508.1 ID=mRNA_H-paniculata_contig8537.16508.1|Name=mRNA_H-paniculata_contig8537.16508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4244bp|location=Sequence derived from alignment at H-paniculata_contig8537:2639..6882- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTGCTCTGGCGACATGTCATTCCTTGAGGAATTGCTCGTGGACCTCTGG
ACGGAGTCCGGCGAGCATGCTCAGCAACTTCGAGATTCAGTGCCAAGGGG
AAAGTGCCTGGTAAGCCTCGGTTGTTATCGCGGTGATTGATGTGCACACG
ATCAAGACGCCTCGCTTTTGCGGGTTTTACGGTGATCGAGTTTCAAATCC
ATGCCCTGTTGGCACTTGTATTGACATTCGTGGAAATTGTATCTCTTTTT
GAAAACTCTGCTATTATTTAGGCTATCCAGTAGTACCAGCCTCCCTCTCT
CCGTAGTTTGTTCGATTTATTAAGGATGGATGAGCATCCCGGCAGTTTGA
AGATTGTGGGCATACATACCTTTGTCATATTTAACGGTCACTGTGATGCT
TTTTTACGCCACATGGTTTTTTACCTTGTTGTGTGTACGTTTGACTTGTT
TTTTTGAAGTCCATGTTGTGTTTTGCAAGCCGAATATCTTATTGAAGTGA
TGTTGCTTGTAGTGGCTTTTTGTTGTTGCTAGTGATCTCATGTATCATGT
ACTACGTGGATTTGTTTGTCGTCAGTCCCGAGTCTCGAATGAATTTTCAG
TACACACGAAAGATTAATCTATTTTATCTGTTTACATGCACATGGTAGTA
AAGTAGCAGCGGGAGCACGGCGTGACGCTCCATATTTTGGTCAGTTTGTG
GATAAGAAGCAAGCAATCCAGGAGATTAAAGATGCCGAGCATACAGCACC
TCCATTTTGTTTCATGGTTGTCATGTTTTCTACAGTAAAGCAATTGATCT
GCCTCTATTTTGACATGCTCTTTACTCTAGATATGATCATTTTTCCAAAC
CGTACCCATCCCCTCCCCCCGGCCGCTCCCATCCATTTTCGTGTTTTGTG
TTGCTCGTTTGTCCCAGGAGGTGCAGCATGAAGCTCACTCCATAAAGGGC
GCAGCGGCGAACCTCATGTGCCACCGGTTGCGGTCAGCCGCCCTTTTCCT
GGAGAAAGCTGGTTTTGTCGGAACGAAGCTCATAGAAGGCAAGTAGTCTT
TCGTTTTTTTTCGAAGTGGTGCGAGTGAGATTGGATTCGTTTATTTGTAG
ATTTCCCTATGAACTGGTTCGTTTTGGGTTGATTTTAGTGTGCTGGTTGG
TTGGTTGGTTGATGTCACGAAACCCAAGAATATCGGCAAGACTTTGGACG
GATTCTGTTGTTTGGAGATTCAGGATATTCAGGATAGTACGAGCTGAGGG
ATTTTCGGATGTGATCGGTTCTGGAGGTTTTCGCTCAGCGGCGCATGTGT
GTCTGTATGTCAACCGCCACCCTGCTATATGCGCGCAACGCTTGGGCAAA
ACGAGAGGGCGAATTGAAAATGCAAGCTTTTGGGGGGTGCCGTCATCGGG
GCGCTTTTTTTTTCTCCCTGTTTTTGTCTATTGGAAATATTCCCCACGTC
GGATGCATCATAATCCATTTGGCCCATCGCTTGTTATTAGTGTACATGAT
CTGTACATGATTCGCGGCTCCTTGAGCCCTGTTTCTAGCTTCGCTCCCTA
CAGCGCTGTATGCCGAGAAGGTGGAGTAGCGGAAAAGTTACGCTTGGACT
TCTCTGATTCGCGGTCACTTCTTTGTTTTCTCGGATCAACGTGTGAAATA
TTCCATAGCCTCAGGCAGCACCTTATGCAAAGGAATCTCGCCAACTCCTG
CGGCAAGCAACCATTGGATCTCACTTTCGATGCAAAGATATTTCTGTTTA
TATACCCAGAGGTTATTGCTGGATAGTATGCGAAAATCGCATAAGCAGCT
AGAAAAAACTGTATTTGTGATCGACAGGATGATTGAGCAGTATTATTATA
AGTACACAAACAAAAATGACGTTTATTCTGTTGAGCACACGTTAGTTTGG
GCATATGTGGTCGGTCGTTGTGAATATAATGGTGTACCGTATAACCCAGA
GGTGTTGATAAGACCACTGGCGGTGGTGATGCGAACGTGTTTCTAACGCG
ATCAATGATCTCGAGAACTACGGCATTAGCTAGCTAGCCACTGACAGGGA
ATATAATTGTGGGGATCTATCTGTCTGTCGATTGACTTTTTTTTTTTTAC
GATCGCGTGATGTCTCCAAGCGTTCTTGACATGGTTGCGTTTAAAGAGCG
TTCGCACCTCCGTAGTGATAGTGAGTGATACCCCCGATTTTATTTTGCTT
TTTTTTTTTTTTTTTTTGCGTTTTACTCAAAACACTGTCGGATGAACTCC
AACATATCAAGGTGGTGGGTGAGTCATGTCATGTCTTATCATTTTTTTTC
GCTCCCGTACTTTTTTTTTTTTTTTTTTTTTCCTAGGGATTTTGAATCAA
GACATGACCTAACGTGCCTACTCGCTGACTTTTTCTTGTGTTCTCCATTT
CACCACAGGGGCACCCGAGGCGCCTATTGTACACAAGGCCATGGTACTGG
GCATGAAAATCTTAGAAGATGAGCTGGTGACGCTTTCCGGGGTGCTGAAA
GATAAAAACCTCATCTAGGGACAGCCTGCGGCGTGTTGCCGTGGTGGATT
GTCCGTTCGTGGACCATCGTCTCTTGTTGTTTGCATGGGTAGGGCAGGCC
GGTCGGTTTGATGGTCGTGTCAAGTGAATATGAATGCCACAGCCAGCCAG
CCAGCCAGCCCTCCGTGTTCTGTAGGTTTGAAGTGAGCTGTTGGAGGGGT
GTGAGGGAGACGGGGAGAAGGGAGGGGGGGTATAACTCTCTATAGCAAAG
ATATGATCGCCACTGTGTAGTCTGGAAGGGCTCTCATTTTTTAAGGTGTC
CACCGTTCGGTGCTTGAGAATGAAAAGAGAGTTACAAGCGACAAAACGCG
GCTTGTCTGCAGGAACAATGTTTCTGTATACCCCCCCCCCGCCCCCCGCC
CCCATCCAACGTAAGTTTCGTTGGTTTGTGGAATCAGGCGTTCACCAGTA
TTGAAATGACTAAAGTTTTGCGTCCGACTTTTGATTGATGGTTATTGAAC
GTGCACGTTTGTTCTTTTCCCATCGAAACTTTCTCACTTTGTGGAACAGC
TCACTTGACCAGTCTACTTGTGGTGTGCCAGGAAAAACGGTGTACGTGTA
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGTGTCGTG
TGTGTTTGTGCATGTATATCAAGTCTAGGGATTACATGTTCTGGAATGTG
TTTTTCGCGTACAGTGGTAGTGTAGGCATCGCTTTGCTGCAGCACACCAC
GGAAATCAAAGTGTTGCATGTGCCTTGCAGACTTGGCAGGGAAGTTGTAA
CGTGTAGGTTTTCCGTAGACAGGTAGATATACATGAGATTCGCCTATGCA
CCGAGTAAGGGTTTCTATTACAGCAGTTTAACGTTAATTTTCACTGTAAA
CACATCTACCCTGCAGACTCGTGGGGGAGCGGAGGGGGCTGCAACGTGTA
GGTTTTTGCGTAGGCAGGTAAGGTACACATGGTGAAGGATTCACCCCATG
TACCGAGCAAGGATTTCTCATACAGTAGTTTGGCGTTTATTTTTACCGTG
TACATAAGGTGAGCACGCCGCCAGCAAGTAGGGTGTGGGAATGTCCACAT
GTTTGCGGCGCGGGACAAATGTCTCGAACTCTGAAACCTTAATCGGGTGG
GGTAATGCCATCTGGTGTGTCTTCGCATCATCGATTGAGAAATGATCACT
GAGACCGCGTTAAGTGTGATTCGCGCCAGATTCTCGTAGAACAGCCAGGA
GTTGTGACCAAGGGACACGAACTGAATGAATGGATGCGTTTCGTCCGTGT
CATGGGTCGGCATGTCAGAGTAGTACTGTTATGGCGGATGCACCGACTGG
TCAAACCATACAACGAAACAACTTGCCGGGGAGGCAGGAAGGCAGGCCAG
GTAGGCAGGCATCTATCTCATTAGCATCATCAGTACGGTTCTGTGTGCTG
TGTTTCATGTCATTATTTTTGGATTGTTCATGATCGTTAAAAAGTTACCC
AACGACCGGGTCGGGAATGAACCTATCAACCGCAGGGAACAGGATCTGGT
TGCGTTCCGTCTGAAGTCAGATCGGGTCGCGCGCCCCTTCTCGGCGGGAC
GCATTACGAGCCGGGGTATTTTGTGAGAACTTTTGATGTGTGCTGCCTAG
AGGATACTTCGCACGATATTGTGACTTCCATAAAATACGGAATGATCTAA
TATTTCGCTTTTCGCATGTGCTATGATAGACGCATATACAGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8537:2639..6882-

>mRNA_H-paniculata_contig8537.16508.1 ID=mRNA_H-paniculata_contig8537.16508.1|Name=mRNA_H-paniculata_contig8537.16508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig8537:2639..6882- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATTCCTTGAGGAATTGCTCGTGGACCTCTGGACGGAGTCCGGCGA
GCATGCTCAGCAACTTCGAGATTCAGTGCCAAGGGGAAAGTGCCTGATGT
CATTCCTTGAGGAATTGCTCGTGGACCTCTGGACGGAGTCCGGCGAGCAT
GCTCAGCAACTTCGAGATTCAGTGCCAAGGGGAAAGTGCCTGGAGGTGCA
GCATGAAGCTCACTCCATAAAGGGCGCAGCGGCGAACCTCATGTGCCACC
GGTTGCGGTCAGCCGCCCTTTTCCTGGAGAAAGCTGGTTTTGTCGGAACG
AAGCTCATAGAAGGAGGTGCAGCATGAAGCTCACTCCATAAAGGGCGCAG
CGGCGAACCTCATGTGCCACCGGTTGCGGTCAGCCGCCCTTTTCCTGGAG
AAAGCTGGTTTTGTCGGAACGAAGCTCATAGAAGGGGCACCCGAGGCGCC
TATTGTACACAAGGCCATGGTACTGGGCATGAAAATCTTAGAAGATGAGC
TGGTGACGCTTTCCGGGGTGCTGAAAGATAAAAACCTCATCTAGGGGCAC
CCGAGGCGCCTATTGTACACAAGGCCATGGTACTGGGCATGAAAATCTTA
GAAGATGAGCTGGTGACGCTTTCCGGGGTGCTGAAAGATAAAAACCTCAT
CTAG
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