mRNA_H-paniculata_contig8530.16501.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8530.16501.1
Unique NamemRNA_H-paniculata_contig8530.16501.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: A0A836CIL5_9STRA (Dynein light chain roadblock n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL5_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.070e-53
Identity = 83/101 (82.18%), Postives = 94/101 (93.07%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPAGAA 303
            ++VEETLERIKVQPGVEGYVICDM+GQVLRRFPTMSQE AE+YA +M HLA KARGVVRDLNPK E+ Y+RIRAKRHEV+VAFD++FLAIVIQRWQPAG +
Sbjct:    2 AQVEETLERIKVQPGVEGYVICDMQGQVLRRFPTMSQETAEMYAASMMHLAHKARGVVRDLNPKSELNYLRIRAKRHEVMVAFDKEFLAIVIQRWQPAGTS 102          
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: D7FWL6_ECTSI (Robl_LC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL6_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 1.030e-48
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRD 258
            SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQE AE+YAEAMRHLALKARGVVRD+NPKGE+KYMRIRAKRHEVLVAF  +
Sbjct:    2 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 87          
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: A0A6T7GUX9_9STRA (Dynein light chain roadblock n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7GUX9_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.710e-47
Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPAG 297
            SEVEETLER+KVQ GVEGYVIC+ +G VLRRFP MSQE AE YA++MRHLA KARGVVRDLNP+ E++Y+RIRAKRHEV++AFD +FL IVIQ+W PAG
Sbjct:    2 SEVEETLERVKVQNGVEGYVICNRQGLVLRRFPQMSQEHAEQYADSMRHLANKARGVVRDLNPQNELRYLRIRAKRHEVMIAFDNEFLVIVIQKWTPAG 100          
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: A0A6U1LT09_9STRA (Dynein light chain roadblock n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LT09_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.100e-46
Identity = 73/99 (73.74%), Postives = 90/99 (90.91%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPAG 297
            SEVEETLER+KVQPGVEGYVIC+ +GQVLRRFP+M Q++AE+YA++MR LA KARGVVRDLNP+ E++Y+RIRA+R EV+VA+D +FL IVIQRWQPA 
Sbjct:    2 SEVEETLERVKVQPGVEGYVICNKQGQVLRRFPSMRQDLAELYADSMRCLAAKARGVVRDLNPQHELRYLRIRARREEVMVAYDNEFLVIVIQRWQPAA 100          
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: F0Y2Y8_AURAN (Dynein light chain roadblock n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Y8_AURAN)

HSP 1 Score: 149 bits (376), Expect = 7.220e-45
Identity = 71/99 (71.72%), Postives = 85/99 (85.86%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPAG 297
            SEVEETLER+K+Q GVEGYVIC  +GQVLRR P+M+Q  AE+YA+ M  L+ KARGVVRDLNPK E++Y+R+RAKRHEVLVAFD++FL IVIQRW PA 
Sbjct:    2 SEVEETLERVKIQAGVEGYVICSKQGQVLRRLPSMTQAQAEIYADFMSQLSRKARGVVRDLNPKNELRYLRLRAKRHEVLVAFDQEFLVIVIQRWTPAS 100          
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: A0A7S3H6W3_9STRA (Dynein light chain roadblock n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6W3_9STRA)

HSP 1 Score: 140 bits (352), Expect = 5.020e-41
Identity = 69/99 (69.70%), Postives = 81/99 (81.82%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPAG 297
            SEVEET+ERIKVQ GVEGYVIC+ +GQVLRRFPTMS E AE YA  M  L  +ARGVVRDL+PK E+ Y+R+RAKRHE++VA+D  F+ IVIQRW PA 
Sbjct:    2 SEVEETIERIKVQSGVEGYVICNKQGQVLRRFPTMSLEDAERYATTMISLTTQARGVVRDLDPKNELSYLRVRAKRHEIMVAYDVQFIVIVIQRWTPAA 100          
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: A0A812SWU6_SYMMI (DYNLRB1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SWU6_SYMMI)

HSP 1 Score: 130 bits (326), Expect = 1.760e-37
Identity = 63/83 (75.90%), Postives = 75/83 (90.36%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAF 249
            SEVEET+ERIKVQPGVEGYVIC+ +GQVLRRFPTM+QE AE Y+EAM  L+ +AR VVRDLNPK E+KY+R+RAKRHE++VAF
Sbjct:    1 SEVEETIERIKVQPGVEGYVICNKQGQVLRRFPTMTQETAEQYSEAMMSLSSQARSVVRDLNPKNELKYLRVRAKRHEIMVAF 83          
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: A0A7S2F8W6_9STRA (Dynein light chain roadblock n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8W6_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.200e-36
Identity = 65/100 (65.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEM--AEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPA 294
            SEVEETLERIK + GVEGYVIC+  G VLRR+P   ++   A VYAE+MR LA KAR VVRDL+P+ E++Y+RIRAK HEV+VAFD +FL +VIQ+W+PA
Sbjct:    7 SEVEETLERIKEKEGVEGYVICNRHGDVLRRYPNEPKDFQDAAVYAESMRILAWKARSVVRDLDPENELQYLRIRAKTHEVIVAFDLEFLVVVIQKWEPA 106          
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: A0A7S1XSI3_9STRA (Dynein light chain roadblock n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSI3_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.600e-36
Identity = 65/101 (64.36%), Postives = 79/101 (78.22%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPAGAA 303
            S+VEETLERIK++PGV GYVIC+ +G VLRRFP+M+ E A+ YA AM+ LA KA GVVRD+NP   ++Y+RIR KR EV+VA D  FL IVIQRW PA  A
Sbjct:    2 SDVEETLERIKMKPGVIGYVICNSDGTVLRRFPSMTPEQAQQYAAAMQKLAAKAGGVVRDMNPTDALEYLRIRCKRQEVVVARDDRFLVIVIQRWMPAEQA 102          
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: A0A7S0SZ17_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZ17_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.480e-35
Identity = 59/98 (60.20%), Postives = 78/98 (79.59%), Query Frame = 1
Query:    1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPA 294
            SEVE T+ERIK   GVEGYVIC+  GQVLRRFPTMS ++A+ YA  M  L  +ARGV+RDL+PK ++KY+R+R+K+HE++VAFD  F+ I++QRW  A
Sbjct:    8 SEVEATIERIKRLNGVEGYVICNQVGQVLRRFPTMSPDVADEYATKMLSLTTQARGVIRDLSPKNDLKYLRVRSKKHEIMVAFDTQFVVIILQRWSAA 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIL5_9STRA1.070e-5382.18Dynein light chain roadblock n=1 Tax=Tribonema min... [more]
D7FWL6_ECTSI1.030e-4891.86Robl_LC7 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6T7GUX9_9STRA2.710e-4775.76Dynein light chain roadblock n=1 Tax=Florenciella ... [more]
A0A6U1LT09_9STRA1.100e-4673.74Dynein light chain roadblock n=1 Tax=Fibrocapsa ja... [more]
F0Y2Y8_AURAN7.220e-4571.72Dynein light chain roadblock n=1 Tax=Aureococcus a... [more]
A0A7S3H6W3_9STRA5.020e-4169.70Dynein light chain roadblock n=1 Tax=Spumella elon... [more]
A0A812SWU6_SYMMI1.760e-3775.90DYNLRB1 protein (Fragment) n=1 Tax=Symbiodinium mi... [more]
A0A7S2F8W6_9STRA2.200e-3665.00Dynein light chain roadblock n=1 Tax=Dictyocha spe... [more]
A0A7S1XSI3_9STRA3.600e-3664.36Dynein light chain roadblock n=1 Tax=Phaeomonas pa... [more]
A0A7S0SZ17_9STRA1.480e-3560.20Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8530contigH-paniculata_contig8530:2555..3970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue2.2e-37
Seed eggNOG ortholog2880.D7FWL6
KEGG koko:K10419
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005868,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030286,GO:0032838,GO:0032991,GO:0036157,GO:0042623,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0045505,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1902494
EggNOG free text desc.dynein intermediate chain binding
EggNOG OGsKOG4115@1,KOG4115@2759
Ec32 ortholog descriptionDynein light chain-related
Ec32 orthologEc-11_002380.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04812
Exons3
Model size306
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8530.16501.1prot_H-paniculata_contig8530.16501.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8530 2555..3970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931071.6517594-CDS-H-paniculata_contig8530:2554..26101622931071.6517594-CDS-H-paniculata_contig8530:2554..2610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8530 2555..2610 -
1691481577.0749972-CDS-H-paniculata_contig8530:2554..26101691481577.0749972-CDS-H-paniculata_contig8530:2554..2610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8530 2555..2610 -
1622931071.6722686-CDS-H-paniculata_contig8530:3082..32511622931071.6722686-CDS-H-paniculata_contig8530:3082..3251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8530 3083..3251 -
1691481577.0900233-CDS-H-paniculata_contig8530:3082..32511691481577.0900233-CDS-H-paniculata_contig8530:3082..3251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8530 3083..3251 -
1622931071.6890087-CDS-H-paniculata_contig8530:3889..39701622931071.6890087-CDS-H-paniculata_contig8530:3889..3970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8530 3890..3970 -
1691481577.1005702-CDS-H-paniculata_contig8530:3889..39701691481577.1005702-CDS-H-paniculata_contig8530:3889..3970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8530 3890..3970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8530.16501.1

>prot_H-paniculata_contig8530.16501.1 ID=prot_H-paniculata_contig8530.16501.1|Name=mRNA_H-paniculata_contig8530.16501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHL
ALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPAGA
A*
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mRNA from alignment at H-paniculata_contig8530:2555..3970-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8530.16501.1 ID=mRNA_H-paniculata_contig8530.16501.1|Name=mRNA_H-paniculata_contig8530.16501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig8530:2555..3970- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAGAAGTAGAAGAAACCCTCGAGCGCATCAAGGTACAACCGGGCGTGGA GGGGTACGTCATATGTGACATGGAAGGACAGGTACAGTATCGCATAAAGC AGGGTATGGTATATTGCACTGATAGTTTCATTATAGAATATTTTGGAAAG GTCAATGGGCACAAGTTGAACCAAAACTTAGGGCATTCAATTTTCACCGC AAATGCAAGCGAGGGTTTGATACGGTGCGGAACCTTAAGGAGGCTAAATT GACTCAATTAGAAGCACACCCAAGAGGTCACCCGAGTGAACACTTGGTAA TTGAGAGTAGATGTAAAAGTTGTTGTGAAGTCGAAAGGGCTGCTAAGCAA AAATCTCAGAGTCGCGGCAACCTATTTGAACATTTTGGCGGCAGCACCCT AAAGGCAAGGCGCCTCCATGTTGCGTTGTGAGCATTATTGCTGAGTATTT GATTCTTTTTAGATAAAACACGGGTAGGAGAATGTGGCGGTTTGTCCGGA ATTTCGAGCGAATTCTCAAGGCGAGGGAAGGCGAATACTGCAGATACGGA AGGATTCGCATAAGGAATAGACACATTCGCCCATCGAGGTATCGAATAAC TCTATTTGTTATACCCTAAGCCATATTGGACAAGGGCAAATAAACATCGT ACACATATATGTGTCGAACCATGTAACCAATAAATATCGGTGTGTAATTG TTTCGGCGAATTGGTGAAGGTATTACGGCGATTTCCGACGATGTCTCAAG AGATGGCAGAGGTGTACGCAGAGGCAATGCGACATCTTGCCCTGAAAGCT AGAGGCGTGGTAAGGGATCTCAACCCGAAGGGTGAAATGAAGTATATGCG CATCCGCGCAAAGCGGCACGAGGTCTTGGTCGCATTTGGTGAGTGGGATA TCACGTTACCATGGTACGTGGCACAAACGTATTGCGTAGGAGATATTATA GTGACTAATACAAACGCCGTGCTCCCAAGTGTTTTCACTATTAACGTTGA TACAACGAACGTAAACGGTAGCGGAGCGGATTGGGTGGCGGCTTAACGTT AGCTTTCAGCGGAATATACAGGTTCATGCGTGGGTGCGCGGCGTTTACGT GCAATTACGCTGCGAAATAGTAACGCGGGAGCCCTATGCAGTGGTAGCTT ATGGCGATGTGTGTACGGTAGCGTCGCCTCTTTCGGTCGTTAATTCTCGC CATCACCTTCTTAACCATTCGCGGATGCTCAAGACAGCCTATATGTTCGC AGATACATAAGATTCCTGGCTTCGTTCGACTATCTTCTACAGATGCATAT AACATGGTATATGATTTACGTACTGAGTAGATTGTACTTGCCGTTCCGTT CTGTGCTCAGACCGTGATTTCCTGGCGATAGTGATCCAGCGGTGGCAGCC GGCGGGGGCAGCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8530:2555..3970-

>mRNA_H-paniculata_contig8530.16501.1 ID=mRNA_H-paniculata_contig8530.16501.1|Name=mRNA_H-paniculata_contig8530.16501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig8530:2555..3970- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAGAAGTAGAAGAAACCCTCGAGCGCATCAAGGTACAACCGGGCGTGGA
GGGGTACGTCATATGTGACATGGAAGGACAGTCAGAAGTAGAAGAAACCC
TCGAGCGCATCAAGGTACAACCGGGCGTGGAGGGGTACGTCATATGTGAC
ATGGAAGGACAGGTATTACGGCGATTTCCGACGATGTCTCAAGAGATGGC
AGAGGTGTACGCAGAGGCAATGCGACATCTTGCCCTGAAAGCTAGAGGCG
TGGTAAGGGATCTCAACCCGAAGGGTGAAATGAAGTATATGCGCATCCGC
GCAAAGCGGCACGAGGTCTTGGTCGCATTTGGTATTACGGCGATTTCCGA
CGATGTCTCAAGAGATGGCAGAGGTGTACGCAGAGGCAATGCGACATCTT
GCCCTGAAAGCTAGAGGCGTGGTAAGGGATCTCAACCCGAAGGGTGAAAT
GAAGTATATGCGCATCCGCGCAAAGCGGCACGAGGTCTTGGTCGCATTTG
ACCGTGATTTCCTGGCGATAGTGATCCAGCGGTGGCAGCCGGCGGGGGCA
GCGTGAACCGTGATTTCCTGGCGATAGTGATCCAGCGGTGGCAGCCGGCG
GGGGCAGCGTGA
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