mRNA_H-paniculata_contig8530.16501.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: A0A836CIL5_9STRA (Dynein light chain roadblock n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL5_9STRA) HSP 1 Score: 171 bits (434), Expect = 1.070e-53 Identity = 83/101 (82.18%), Postives = 94/101 (93.07%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPAGAA 303
++VEETLERIKVQPGVEGYVICDM+GQVLRRFPTMSQE AE+YA +M HLA KARGVVRDLNPK E+ Y+RIRAKRHEV+VAFD++FLAIVIQRWQPAG +
Sbjct: 2 AQVEETLERIKVQPGVEGYVICDMQGQVLRRFPTMSQETAEMYAASMMHLAHKARGVVRDLNPKSELNYLRIRAKRHEVMVAFDKEFLAIVIQRWQPAGTS 102
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: D7FWL6_ECTSI (Robl_LC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL6_ECTSI) HSP 1 Score: 158 bits (400), Expect = 1.030e-48 Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRD 258
SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQE AE+YAEAMRHLALKARGVVRD+NPKGE+KYMRIRAKRHEVLVAF +
Sbjct: 2 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 87
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: A0A6T7GUX9_9STRA (Dynein light chain roadblock n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7GUX9_9STRA) HSP 1 Score: 155 bits (392), Expect = 2.710e-47 Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPAG 297
SEVEETLER+KVQ GVEGYVIC+ +G VLRRFP MSQE AE YA++MRHLA KARGVVRDLNP+ E++Y+RIRAKRHEV++AFD +FL IVIQ+W PAG
Sbjct: 2 SEVEETLERVKVQNGVEGYVICNRQGLVLRRFPQMSQEHAEQYADSMRHLANKARGVVRDLNPQNELRYLRIRAKRHEVMIAFDNEFLVIVIQKWTPAG 100
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: A0A6U1LT09_9STRA (Dynein light chain roadblock n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LT09_9STRA) HSP 1 Score: 154 bits (388), Expect = 1.100e-46 Identity = 73/99 (73.74%), Postives = 90/99 (90.91%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPAG 297
SEVEETLER+KVQPGVEGYVIC+ +GQVLRRFP+M Q++AE+YA++MR LA KARGVVRDLNP+ E++Y+RIRA+R EV+VA+D +FL IVIQRWQPA
Sbjct: 2 SEVEETLERVKVQPGVEGYVICNKQGQVLRRFPSMRQDLAELYADSMRCLAAKARGVVRDLNPQHELRYLRIRARREEVMVAYDNEFLVIVIQRWQPAA 100
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: F0Y2Y8_AURAN (Dynein light chain roadblock n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Y8_AURAN) HSP 1 Score: 149 bits (376), Expect = 7.220e-45 Identity = 71/99 (71.72%), Postives = 85/99 (85.86%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPAG 297
SEVEETLER+K+Q GVEGYVIC +GQVLRR P+M+Q AE+YA+ M L+ KARGVVRDLNPK E++Y+R+RAKRHEVLVAFD++FL IVIQRW PA
Sbjct: 2 SEVEETLERVKIQAGVEGYVICSKQGQVLRRLPSMTQAQAEIYADFMSQLSRKARGVVRDLNPKNELRYLRLRAKRHEVLVAFDQEFLVIVIQRWTPAS 100
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: A0A7S3H6W3_9STRA (Dynein light chain roadblock n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6W3_9STRA) HSP 1 Score: 140 bits (352), Expect = 5.020e-41 Identity = 69/99 (69.70%), Postives = 81/99 (81.82%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPAG 297
SEVEET+ERIKVQ GVEGYVIC+ +GQVLRRFPTMS E AE YA M L +ARGVVRDL+PK E+ Y+R+RAKRHE++VA+D F+ IVIQRW PA
Sbjct: 2 SEVEETIERIKVQSGVEGYVICNKQGQVLRRFPTMSLEDAERYATTMISLTTQARGVVRDLDPKNELSYLRVRAKRHEIMVAYDVQFIVIVIQRWTPAA 100
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: A0A812SWU6_SYMMI (DYNLRB1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SWU6_SYMMI) HSP 1 Score: 130 bits (326), Expect = 1.760e-37 Identity = 63/83 (75.90%), Postives = 75/83 (90.36%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAF 249
SEVEET+ERIKVQPGVEGYVIC+ +GQVLRRFPTM+QE AE Y+EAM L+ +AR VVRDLNPK E+KY+R+RAKRHE++VAF
Sbjct: 1 SEVEETIERIKVQPGVEGYVICNKQGQVLRRFPTMTQETAEQYSEAMMSLSSQARSVVRDLNPKNELKYLRVRAKRHEIMVAF 83
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: A0A7S2F8W6_9STRA (Dynein light chain roadblock n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8W6_9STRA) HSP 1 Score: 128 bits (321), Expect = 2.200e-36 Identity = 65/100 (65.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEM--AEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPA 294
SEVEETLERIK + GVEGYVIC+ G VLRR+P ++ A VYAE+MR LA KAR VVRDL+P+ E++Y+RIRAK HEV+VAFD +FL +VIQ+W+PA
Sbjct: 7 SEVEETLERIKEKEGVEGYVICNRHGDVLRRYPNEPKDFQDAAVYAESMRILAWKARSVVRDLDPENELQYLRIRAKTHEVIVAFDLEFLVVVIQKWEPA 106
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: A0A7S1XSI3_9STRA (Dynein light chain roadblock n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSI3_9STRA) HSP 1 Score: 127 bits (319), Expect = 3.600e-36 Identity = 65/101 (64.36%), Postives = 79/101 (78.22%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPAGAA 303
S+VEETLERIK++PGV GYVIC+ +G VLRRFP+M+ E A+ YA AM+ LA KA GVVRD+NP ++Y+RIR KR EV+VA D FL IVIQRW PA A
Sbjct: 2 SDVEETLERIKMKPGVIGYVICNSDGTVLRRFPSMTPEQAQQYAAAMQKLAAKAGGVVRDMNPTDALEYLRIRCKRQEVVVARDDRFLVIVIQRWMPAEQA 102
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Match: A0A7S0SZ17_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZ17_9STRA) HSP 1 Score: 126 bits (316), Expect = 1.480e-35 Identity = 59/98 (60.20%), Postives = 78/98 (79.59%), Query Frame = 1
Query: 1 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLALKARGVVRDLNPKGEMKYMRIRAKRHEVLVAFDRDFLAIVIQRWQPA 294
SEVE T+ERIK GVEGYVIC+ GQVLRRFPTMS ++A+ YA M L +ARGV+RDL+PK ++KY+R+R+K+HE++VAFD F+ I++QRW A
Sbjct: 8 SEVEATIERIKRLNGVEGYVICNQVGQVLRRFPTMSPDVADEYATKMLSLTTQARGVIRDLSPKNDLKYLRVRSKKHEIMVAFDTQFVVIILQRWSAA 105 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8530.16501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8530.16501.1 >prot_H-paniculata_contig8530.16501.1 ID=prot_H-paniculata_contig8530.16501.1|Name=mRNA_H-paniculata_contig8530.16501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQEMAEVYAEAMRHLback to top mRNA from alignment at H-paniculata_contig8530:2555..3970- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8530.16501.1 ID=mRNA_H-paniculata_contig8530.16501.1|Name=mRNA_H-paniculata_contig8530.16501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig8530:2555..3970- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8530:2555..3970- >mRNA_H-paniculata_contig8530.16501.1 ID=mRNA_H-paniculata_contig8530.16501.1|Name=mRNA_H-paniculata_contig8530.16501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig8530:2555..3970- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |