mRNA_H-paniculata_contig8523.16495.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8523.16495.1 vs. uniprot
Match: D7FKF4_ECTSI (PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKF4_ECTSI) HSP 1 Score: 235 bits (600), Expect = 2.310e-76 Identity = 121/172 (70.35%), Postives = 144/172 (83.72%), Query Frame = 1
Query: 1 LFRQGGRFKRRTFTFGFGTGNERAEVRLKEDVDTVLCWRKETPEGKNTESWHEIDLADVKTIESKGRTSFMMSSRTGDLLLELEAIDGGDVRDVWVESLSALLEHLRKHPQARVAQKSVTDRVKEEAQKQRHFAKRTVEMQQSKKDADARKARYMKETGGMQYTAIAMANRS 516
L RQG FKRRTFTFGFGTG+E +VRLK D DTVL WRK++ EG + WHEIDL D+KT+E KG S +MSS+TGDLLLELEA + G VRD WVESL A+ E +R +PQAR+AQKSV DR+K++AQ+QRH AKRT+EMQQ+KKDA+ARKARY+KETGGMQYTA+AMANRS
Sbjct: 31 LLRQGDLFKRRTFTFGFGTGHESTDVRLKPDFDTVLAWRKKS-EGDKDKDWHEIDLNDIKTVEPKGSASLVMSSKTGDLLLELEA-ENGSVRDSWVESLQAVAEDVRLNPQARMAQKSVKDRMKDQAQRQRHLAKRTIEMQQTKKDAEARKARYLKETGGMQYTALAMANRS 200
BLAST of mRNA_H-paniculata_contig8523.16495.1 vs. uniprot
Match: A0A835ZIX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIX0_9STRA) HSP 1 Score: 142 bits (359), Expect = 1.350e-39 Identity = 78/174 (44.83%), Postives = 111/174 (63.79%), Query Frame = 1
Query: 43 FGFGTGNERAEVRLKEDVDTVLCWRK----ETPEGKNTESWHEIDLADVKTIESKGRTSFMMSSRTGDLLLELEAIDGGDV------------RDVWVESLSALLEHLRKHPQARVAQKSVTDRVKEEAQKQRHFAKRTVEMQQSKKDADARKARYMKETGGMQYTAIAMANRS 516
FGFG+ +++ VRL +TVL W++ E G +W +IDL DVK ++ +G T + SR GDLLLE++ G RD W +L+ L E LR++PQ A +SV +RVKE A KQ+HFA+R++E+Q +K+DA+ARKAR+M E GG++YTA+AMANRS
Sbjct: 45 FGFGSRSDKVTVRLSAQSETVLQWQRAAADEEAGGGGEAAWTDIDLTDVKIVDKRGETGLALVSRRGDLLLEVDMDSGTGXXXXXXXXXXXAQRDAWHAALTDLTEDLRRNPQRAEASRSVAERVKEAALKQKHFAQRSIELQAAKRDAEARKARFMAEAGGLKYTAMAMANRS 218
BLAST of mRNA_H-paniculata_contig8523.16495.1 vs. uniprot
Match: A0A7S2SSX7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSX7_9STRA) HSP 1 Score: 119 bits (297), Expect = 1.290e-30 Identity = 70/168 (41.67%), Postives = 105/168 (62.50%), Query Frame = 1
Query: 10 QGGRFKRRTFTFGFGTGNERAEVRLKEDVDTVLCWRKETPEGKNTESWHEIDLADVKTIESKGRTSFMMSSRTGDLLLELEAIDGGDVRDVWVESLSALLEHLRKHPQARVAQKSVTDRVKEEAQKQRHFAKRTVEMQQSKKDADARKARYMKETGGMQYTAIAMANR 513
+G RF+R+ TFGFG G E +++KE T++ W EG N+ EI L DV+++E KG + S+TGDLLLE+EA+DG RD WV +++ E K P + + T +++ A KQ +F KR +E+ K+ A+ RKA+ MKE+GG++YTA+AMA+R
Sbjct: 29 KGARFRRKKLTFGFGMGWEDVTMKVKESTATLM-WFTSVQEGSNS---GEIRLRDVRSVEPKGEIGLTVHSKTGDLLLEVEAVDG-QTRDYWVPAIAMAAELPVKGP---LPDRPQTSSMRDRAAKQAYFMKRDLELTAKKQLAEQRKAKLMKESGGLKYTALAMASR 188
BLAST of mRNA_H-paniculata_contig8523.16495.1 vs. uniprot
Match: A0A4D9D2W6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2W6_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 4.170e-20 Identity = 57/170 (33.53%), Postives = 99/170 (58.24%), Query Frame = 1
Query: 10 QGGRFKRRTFTFG-FGTGNERAEVRLKEDVDTVLCWRKETPEGKNTESWHEIDLADVKTIESKGRTSFMMSSRTGDLLLELEAIDGGDVRDVWVESLSALLEHLRKHPQARVAQKSVTDRVKEEAQKQRHFAKRTVEMQQSKKDADARKARYMKETGGMQYTAIAMANRS 516
+G FK+R FT G F ++ VR+K++ ++ + + + EI D+K+I++ G S + S+TGD+LLE+EA + RD+W+ +L+ +L H K + +KE A+K+ +F +R E++ KK +A+KA++MKE GG++YTA+ MA R+
Sbjct: 38 RGATFKKRNFTLGGFALQTKKVFVRVKQEEGNCALVYRQADDMRTAGT--EIQAGDIKSIDANGAKSMTVLSKTGDVLLEIEAAEEAQ-RDLWLTALNEVLLHNFKVMGEDGVVRGQPRNMKERAEKELYFQRRQKEIELKKKITEAKKAKFMKEAGGLKYTALHMAGRA 204
BLAST of mRNA_H-paniculata_contig8523.16495.1 vs. uniprot
Match: W7T894_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T894_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 9.740e-17 Identity = 44/120 (36.67%), Postives = 76/120 (63.33%), Query Frame = 1
Query: 157 EIDLADVKTIESKGRTSFMMSSRTGDLLLELEAIDGGDVRDVWVESLSALLEHLRKHPQARVAQKSVTDRVKEEAQKQRHFAKRTVEMQQSKKDADARKARYMKETGGMQYTAIAMANRS 516
EI D+K+I++ G S + S+TGD+LLE+EA + RD+W+ +L+ +L H K + +KE A+K+ +F +R +++ +K +A+KA++MKE GG++YTA+ MA R+
Sbjct: 7 EIQAGDIKSIDANGAKSMTVLSKTGDVLLEIEAAEEAQ-RDLWLTALNEVLLHNFKVMGEDGVVRGQPRNMKERAEKELYFQRRQKDIELKRKSTEAKKAKFMKEAGGLKYTALHMAGRA 125
BLAST of mRNA_H-paniculata_contig8523.16495.1 vs. uniprot
Match: A0A3F2RRR2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RRR2_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.610e-14 Identity = 60/178 (33.71%), Postives = 96/178 (53.93%), Query Frame = 1
Query: 1 LFRQGGRFKRRTFTFGFGTGNERAEVRLKEDVDTVLCWRKETPEGKNTESWHEIDLADVKTIESKGRTSFMMSSRTGDLLLELEAIDGGDVRDVWVESLSALLEH------LRKHPQARVA-QKSVTDRVKEEAQKQRHFAKRTVEMQQSKKDADARKARYMKETGGMQYTAIAMANR 513
+ ++G F R+ G TG ER ++L ED T+L W+ T +IDL +V I+++G+T ++SR GD+L+++EA D ++RD WV L + E + Q+ + +K V DR K KQ ++AKRT E++Q K ++ GM+YTA+AM+NR
Sbjct: 23 VLQKGAYFLRKKTILGLSTGTERIHIKLDEDGHTLL-WKLHDSIKNAT----KIDLHNVNLIQAQGKTGLTITSRKGDVLMDVEA-DSEEIRDTWVTHLQMVCEDNGASDDTEEEVQSGLKFRKMVEDRSK----KQVYWAKRTQELEQRKXXXXXXXKKFAGV--GMKYTALAMSNR 188
BLAST of mRNA_H-paniculata_contig8523.16495.1 vs. uniprot
Match: A0A7S2B2R1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B2R1_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 2.020e-13 Identity = 54/148 (36.49%), Postives = 82/148 (55.41%), Query Frame = 1
Query: 91 DVDTVLCWRKETPEGKNTESWHEIDLADVKTIESKGRTSFMMSSRTGDLLLELEAIDGGDVRDVWVESLSALLEHLRKH------PQ-ARVAQKSVTDRVKEEAQKQRHFAKRTVEMQQSKKDADARKARYMKETGGMQYTAIAMANR 513
D ++L W + H IDL DV+ +++K ++S GDLLLEL D D+ VE LS LL RK+ P+ A K+V +R K KQ +F +R +E+ Q ++ A+ RK ++MK++GG++YTA+AMA R
Sbjct: 1 DATSLLWW------ASGADKKH-IDLKDVREVKTKEELGVTITSLNGDLLLELTCEDLATRGDL-VEGLSELLRDTRKNVGGGENPETAPTKGKTVMERTK----KQAYFMERDIELTQKRRAAEKRKEKFMKDSGGLKYTALAMAAR 136
BLAST of mRNA_H-paniculata_contig8523.16495.1 vs. uniprot
Match: A0A7R9ZLQ0_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZLQ0_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 2.700e-10 Identity = 37/88 (42.05%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 253 AIDGGDVRDVWVESLSALLEHLRKHPQARVAQKSVTDRVKEEAQKQRHFAKRTVEMQQSKKDADARKARYMKETGGMQYTAIAMANRS 516
A D D RD L L+E KH Q + ++ D +K A+K HFA+R +EM+++K+ ++RKA+Y++++GG++YTAIAMANR+
Sbjct: 180 AFDSQDKRDKVSLDLKLLIEW-HKHKQPHIEEELPRDGLKARAKKAAHFARRELEMRETKRTRESRKAKYIQDSGGLKYTAIAMANRT 266
BLAST of mRNA_H-paniculata_contig8523.16495.1 vs. uniprot
Match: A0A7S0C0Q8_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0Q8_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 5.330e-10 Identity = 30/50 (60.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query: 367 VKEEAQKQRHFAKRTVEMQQSKKDADARKARYMKETGGMQYTAIAMANRS 516
+KE A+K HFAKR +E+Q++K+D + RKA+Y+KE+GG++YTAIAMANR+
Sbjct: 167 LKERAEKAAHFAKREIELQKTKRDREKRKAKYLKESGGLKYTAIAMANRA 216
BLAST of mRNA_H-paniculata_contig8523.16495.1 vs. uniprot
Match: K8Z003_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z003_NANGC) HSP 1 Score: 62.8 bits (151), Expect = 1.070e-8 Identity = 39/107 (36.45%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 196 GRTSFMMSSRTGDLLLELEAIDGGDVRDVWVESLSALLEHLRKHPQARVAQKSVTDRVKEEAQKQRHFAKRTVEMQQSKKDADARKARYMKETGGMQYTAIAMANRS 516
G S + S+TGD+LLE+EA + RD+W+ +L+ +L H K + +KE A+K+R R +++ +K +A+KA++MKE GG++YTA+ MA R+
Sbjct: 128 GAKSMTVLSKTGDVLLEIEAAEEAQ-RDLWLTALNEVLLHNFKVMGEDGVVRGQPRNMKERAEKER----RQKDIELKRKSTEAKKAKFMKEAGGLKYTALHMAGRA 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8523.16495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8523.16495.1 >prot_H-paniculata_contig8523.16495.1 ID=prot_H-paniculata_contig8523.16495.1|Name=mRNA_H-paniculata_contig8523.16495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp LFRQGGRFKRRTFTFGFGTGNERAEVRLKEDVDTVLCWRKETPEGKNTESback to top mRNA from alignment at H-paniculata_contig8523:838..2773- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8523.16495.1 ID=mRNA_H-paniculata_contig8523.16495.1|Name=mRNA_H-paniculata_contig8523.16495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1936bp|location=Sequence derived from alignment at H-paniculata_contig8523:838..2773- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8523:838..2773- >mRNA_H-paniculata_contig8523.16495.1 ID=mRNA_H-paniculata_contig8523.16495.1|Name=mRNA_H-paniculata_contig8523.16495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig8523:838..2773- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |