mRNA_H-paniculata_contig850.16483.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig850.16483.1
Unique NamemRNA_H-paniculata_contig850.16483.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig850.16483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig850contigH-paniculata_contig850:7428..7730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931068.2612855-CDS-H-paniculata_contig850:7427..77301622931068.2612855-CDS-H-paniculata_contig850:7427..7730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig850 7428..7730 -
1691481575.4567893-CDS-H-paniculata_contig850:7427..77301691481575.4567893-CDS-H-paniculata_contig850:7427..7730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig850 7428..7730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig850.16483.1prot_H-paniculata_contig850.16483.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig850 7428..7730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig850.16483.1

>prot_H-paniculata_contig850.16483.1 ID=prot_H-paniculata_contig850.16483.1|Name=mRNA_H-paniculata_contig850.16483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
FAGRVISPGNGRSAYNALVGKYEERTQAQVMGLHADLANMAVGTPDQDPD
DFILAVEKVVGNLAMLDEPMTDSRKCNIVLAGLTDDYAMVRTVIRSRGLI
P
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mRNA from alignment at H-paniculata_contig850:7428..7730-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig850.16483.1 ID=mRNA_H-paniculata_contig850.16483.1|Name=mRNA_H-paniculata_contig850.16483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig850:7428..7730- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGCGGGCAGAGTCATATCCCCAGGAAACGGACGAAGCGCTTACAACGC
GTTGGTGGGAAAGTATGAAGAAAGAACACAGGCGCAGGTAATGGGTCTAC
ACGCCGACCTCGCTAACATGGCCGTCGGCACACCGGACCAAGACCCGGAC
GACTTCATTCTTGCGGTCGAAAAAGTAGTTGGCAATCTGGCCATGCTTGA
TGAGCCGATGACCGACTCCCGCAAATGCAACATCGTCCTCGCCGGACTGA
CCGACGATTACGCGATGGTACGAACCGTCATTAGATCGCGCGGGCTAATT
CCA
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Coding sequence (CDS) from alignment at H-paniculata_contig850:7428..7730-

>mRNA_H-paniculata_contig850.16483.1 ID=mRNA_H-paniculata_contig850.16483.1|Name=mRNA_H-paniculata_contig850.16483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig850:7428..7730- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGCGGGCAGAGTCATATCCCCAGGAAACGGACGAAGCGCTTACAACGC
GTTGGTGGGAAAGTATGAAGAAAGAACACAGGCGCAGGTAATGGGTCTAC
ACGCCGACCTCGCTAACATGGCCGTCGGCACACCGGACCAAGACCCGGAC
GACTTCATTCTTGCGGTCGAAAAAGTAGTTGGCAATCTGGCCATGCTTGA
TGAGCCGATGACCGACTCCCGCAAATGCAACATCGTCCTCGCCGGACTGA
CCGACGATTACGCGATGGTACGAACCGTCATTAGATCGCGCGGGCTAATT
CCATTCGCGGGCAGAGTCATATCCCCAGGAAACGGACGAAGCGCTTACAA
CGCGTTGGTGGGAAAGTATGAAGAAAGAACACAGGCGCAGGTAATGGGTC
TACACGCCGACCTCGCTAACATGGCCGTCGGCACACCGGACCAAGACCCG
GACGACTTCATTCTTGCGGTCGAAAAAGTAGTTGGCAATCTGGCCATGCT
TGATGAGCCGATGACCGACTCCCGCAAATGCAACATCGTCCTCGCCGGAC
TGACCGACGATTACGCGATGGTACGAACCGTCATTAGATCGCGCGGGCTA
ATTCCA
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