mRNA_H-paniculata_contig8491.16473.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8491.16473.1
Unique NamemRNA_H-paniculata_contig8491.16473.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8491.16473.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 5.120e-36
Identity = 74/153 (48.37%), Postives = 90/153 (58.82%), Query Frame = -2 
Query:    6 SWFLLHQRK*E-----------GPRVQYRSHVLKAIFIVANVRPDPDRNFDGKIGIWRVCVLKTAQQSSKKR-----------------------IRREEYEFDVTIDAEWYAA**IQELLPTTKKKVPWLKGRLTVV*QDGASPQTGRGNPE 362
            SWF L + K +            PRV + SH+ K + IVAN RPDP  +FDGKIGIWR+CV++TAQ+SSKK                        I +EEYEFD TIDAEWY    I  LLP  K+K+PWL+ +  VV QDGASP TG+GNPE
Sbjct:  160 SWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPE 312
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8491.16473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE5.120e-3648.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8491contigH-paniculata_contig8491:4805..5350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size547
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.7586946-CDS-H-paniculata_contig8491:4804..51521622931065.7586946-CDS-H-paniculata_contig8491:4804..5152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8491 4805..5152 +
1691481574.1682904-CDS-H-paniculata_contig8491:4804..51521691481574.1682904-CDS-H-paniculata_contig8491:4804..5152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8491 4805..5152 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.7722197-UTR-H-paniculata_contig8491:5152..53501622931065.7722197-UTR-H-paniculata_contig8491:5152..5350Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8491 5153..5350 +
1691481574.1772208-UTR-H-paniculata_contig8491:5152..53501691481574.1772208-UTR-H-paniculata_contig8491:5152..5350Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8491 5153..5350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8491.16473.1prot_H-paniculata_contig8491.16473.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8491 4805..5152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8491.16473.1

>prot_H-paniculata_contig8491.16473.1 ID=prot_H-paniculata_contig8491.16473.1|Name=mRNA_H-paniculata_contig8491.16473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
KRSGFPLPVWGLAPSCYTTVNLPFSHGTFFLVVGRSSWIYHAAYHSASMV
TSNSYSSRLMRFFDDCWAVFSTQTRQIPIFPSKLRSGSGRTFATMNMALR
TWLRYCTRGPSHFLW*
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mRNA from alignment at H-paniculata_contig8491:4805..5350+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8491.16473.1 ID=mRNA_H-paniculata_contig8491.16473.1|Name=mRNA_H-paniculata_contig8491.16473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=546bp|location=Sequence derived from alignment at H-paniculata_contig8491:4805..5350+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCGCTCCGGGTTCCCCCTGCCCGTTTGGGGGCTCGCGCCGTCCTGCTA
CACCACTGTCAACCTGCCCTTTAGCCATGGCACTTTCTTCTTGGTCGTCG
GCAGGAGCTCTTGGATTTATCACGCCGCGTACCACTCCGCGTCGATGGTC
ACGTCGAACTCGTACTCCTCCCGCCTTATGCGCTTCTTCGATGATTGTTG
GGCAGTCTTTAGCACGCAAACGCGCCAGATACCAATCTTCCCGTCGAAGT
TACGATCCGGGTCCGGCCGAACGTTCGCGACGATGAATATGGCTTTGAGG
ACGTGGCTCCGGTACTGCACGCGAGGACCTTCTCATTTTCTCTGGTGAAG
TAGAAACCAGCTTCGGTGGGTACGTTGGGGCCGCAGCCATACTTTGCGTA
GAGTGGTGCCGGCTCGTCATCGGAAATTTCGAGAGACCCGGCTTGATTGC
CATCGTGATGTCGATTGCAAGCCCATACCTCCTGCCCAGAGACAACTTCT
TGCCTTTGCGGTGTGGTGGGGTCGCCGGGGCGGGGTTCCATCGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8491:4805..5350+

>mRNA_H-paniculata_contig8491.16473.1 ID=mRNA_H-paniculata_contig8491.16473.1|Name=mRNA_H-paniculata_contig8491.16473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig8491:4805..5350+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCGCTCCGGGTTCCCCCTGCCCGTTTGGGGGCTCGCGCCGTCCTGCTA
CACCACTGTCAACCTGCCCTTTAGCCATGGCACTTTCTTCTTGGTCGTCG
GCAGGAGCTCTTGGATTTATCACGCCGCGTACCACTCCGCGTCGATGGTC
ACGTCGAACTCGTACTCCTCCCGCCTTATGCGCTTCTTCGATGATTGTTG
GGCAGTCTTTAGCACGCAAACGCGCCAGATACCAATCTTCCCGTCGAAGT
TACGATCCGGGTCCGGCCGAACGTTCGCGACGATGAATATGGCTTTGAGG
ACGTGGCTCCGGTACTGCACGCGAGGACCTTCTCATTTTCTCTGGTGAAA
GCGCTCCGGGTTCCCCCTGCCCGTTTGGGGGCTCGCGCCGTCCTGCTACA
CCACTGTCAACCTGCCCTTTAGCCATGGCACTTTCTTCTTGGTCGTCGGC
AGGAGCTCTTGGATTTATCACGCCGCGTACCACTCCGCGTCGATGGTCAC
GTCGAACTCGTACTCCTCCCGCCTTATGCGCTTCTTCGATGATTGTTGGG
CAGTCTTTAGCACGCAAACGCGCCAGATACCAATCTTCCCGTCGAAGTTA
CGATCCGGGTCCGGCCGAACGTTCGCGACGATGAATATGGCTTTGAGGAC
GTGGCTCCGGTACTGCACGCGAGGACCTTCTCATTTTCTCTGGTGA
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