mRNA_H-paniculata_contig8489.16469.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8489.16469.1
Unique NamemRNA_H-paniculata_contig8489.16469.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8489.16469.1 vs. uniprot
Match: A0A6H5JM19_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM19_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 9.290e-60
Identity = 302/674 (44.81%), Postives = 341/674 (50.59%), Query Frame = 1
Query:  175 EAASDRESLVVLRNACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSKRKLIAADEDLLENRQGRPKLLPL-AMWPKDAEEE-----RMTNAAVAANAHRINQLIAVSTQTPPAQKPPQPPRLPGISIPPEGRASNGAGXXXXXXXXXXXXXVNNAGCSPRPESTSNATLGSLEQTNSSXXXXXXXXXXXXXXXXXXXXXNXXXXXKXXXANAAHEVNAXXXXXXXXXXXQELDDRHAVNRLALPPEAAQLSLEARAGAYKRAQEAAAAGMAAAKAFVEDGYRKDDKDETTAANGAGVAPTTSTTVEQSPHQKQGVLGRLVS---------------------TSAPTEAKAMPLPLASVATFQPTTT---GNLASPHENPAP-SVAMLPLNFSPPRGTSAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGQVAHPGMAAGGLPLPSGMPPGMPHMGMTMAYHPQYGVYQPYPQSLYAAYLAQYQLQHGLNPYDGIPL--YDGIN-----------------------PYLNAVYGHVGAPGVAVGTPGVEAGQAQQGLAGVTA-----------------------------ACPPLSVTAXXXXXXXXXXXXXXXXXXEKAQPKESEEAKQLAVETLLGLKNSQGSKGDAP-DEASAQ 1938
            +  +DR+++VVLR+ACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSKRKLIAADEDLLENRQ RPKL+ +  MWPKDA+++             A AH         T                + +   G A+  AG       XXXXXX                           XXXXXXXXXXXXXXXXXXXXX XXXXX    A  A   +       XXXXX+ + D      L LP  AAQLSLEARAGAY+RAQEAAAAGMAAA+AFVE  Y  D   E  +A    + PT      Q   QKQG                            +S            AS+AT   TT    G +++P  +  P S A LP    PP               XXXXXXXXXXXXXXXXXXXXXXX     HPGM       P GM PGM   G+ MAYHPQYG+Y PYPQSLYAAYLAQYQLQ G+NPY+G+ +  Y+G+N                       P          A G A  TP    G                                        A PP +V AXXXXXXXX          EK + KE+E+AKQLAVETLLGLKNSQGSKG  P DEASAQ
Sbjct:  172 DVTNDRDTMVVLRSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSKRKLIAADEDLLENRQSRPKLIQVPTMWPKDAQQQGHAAXXXXXXXXXATAHAXXXXXXXXT----------------MHVAAGGEAALNAGAPSAGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPGAAKRASPKSGGVKPRHXXXXXRPIAD------LVLPSGAAQLSLEARAGAYRRAQEAAAAGMAAARAFVEGEYPTDGSGEFLSAKSTAL-PT-----GQPGGQKQGATAAXXXXXXXXXXXXXXXXXXXVPSALSSPXXXXXXXEXASASLATAMDTTAATGGGVSAPCTSAPPGSAAGLP----PPAAVGVPSTATGADQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPGMP------PQGMAPGM---GVPMAYHPQYGMYSPYPQSLYAAYLAQYQLQQGINPYEGMSINPYEGMNXXXXXXXXXXXXXXXXXXXXXXSPATTTSPAAAAAAGAAP-TPAXXGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLALPP-AVAAXXXXXXXX----------EKPRRKENEDAKQLAVETLLGLKNSQGSKGGGPMDEASAQ 792          
BLAST of mRNA_H-paniculata_contig8489.16469.1 vs. uniprot
Match: D8LM00_ECTSI (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM00_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 2.410e-50
Identity = 272/661 (41.15%), Postives = 312/661 (47.20%), Query Frame = 1
Query:  175 EAASDRESLVVLRNACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSKRKLIAADEDLLENRQGRPKLLPL-AMWPKDAEEERMTNAAVAANAHRINQLIAVSTQTPPAQKPPQPPRLPGISIPPEGRASNGAGXXXXXXXXXXXXXVNNAGCSPRPESTSNATLGSLEQTNSSXXXXXXXXXXXXXXXXXXXXXNXXXXXKXXXANAAHEVNAXXXXXXXXXXXQELDDRHAVNRLALPPEAAQLSLEARAGAYKRAQEAAAAGMAAAKAFVEDGYRKDDKDETTAANGAGVAPTTSTTVEQSPHQKQGVLGRLVSTSAPTEAKAMPLPLASVATFQPTTTGNLASPHENPAPSVAMLPLNFSPPRGTSAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------AGQVA---HPGMAAGGLPLPS-----GMPP-GM-PHMGMTMAYHPQYGVYQPYPQSLYAAYLAQYQLQHGLNPYDGIPLYDGINPY---------------------------LNAVYGHVGAPGVAVGTPGVEA-------GQAQQG-------------------LAGVTAACPPLSVTAXXXXXXXXXXXXXXXXXXEKAQPKESEEAKQLAVETLLGLKNSQGSKGDAP-DEASAQ 1938
            +  +DR+++VVLR+ACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSKRKLIAADEDLLENRQ RPKL+ +  MWPKDA+++   +AA                                              XXXXXXXXXXXXX   A     P   ++ + G+ ++ +                             K       H+                      +  L LP  AAQLSLEARAGAY+RAQEAAAAGMAAA+AFVE  Y  D   E  +A    + PT            QG      +T+AP+++                                                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        AG  A   HP  A  G          GMPP GM P MG+ MAYHPQYG+Y PYPQSLYAAYLAQYQLQ G+NPY+G+ +    NPY                                    A  VA   P   A       G A                      L GV     P +V AXXXXXXXX          EK + KE+E+AKQLAVETLLGLKNSQGSKG  P DEASAQ
Sbjct:  196 DVTNDRDTMVVLRSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSKRKLIAADEDLLENRQSRPKLIQVPTMWPKDAQQQG--HAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAVAGGGPNGPTSPSPGAAKRASP----------------------------KSGGVKPRHKAGGV----------------RPIADLVLPSGAAQLSLEARAGAYRRAQEAAAAGMAAARAFVEGEYPTDGNGEFLSAKSTAL-PT-----------GQG------ATAAPSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKAGAPAPPQHPPAAGSGAXXXXXXXXXGMPPQGMAPGMGVPMAYHPQYGMYSPYPQSLYAAYLAQYQLQQGVNPYEGMSM----NPYEGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAVATSAPAGGAXXXXXXXGPAPPAVSGXXXXXXXXXXXXXXXXLPGVKGLALPPAVAAXXXXXXXX----------EKPRRKENEDAKQLAVETLLGLKNSQGSKGGGPMDEASAQ 778          
BLAST of mRNA_H-paniculata_contig8489.16469.1 vs. uniprot
Match: D7FPF9_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF9_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.190e-5
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1
Query:  184 SDRESLVVLRNACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSK 345
            S R+  + LR +CD C R+KR CDG  PC+ C RR +PC  S ++KSGP KG+K
Sbjct:   10 SRRDPTIELRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTK 63          
BLAST of mRNA_H-paniculata_contig8489.16469.1 vs. uniprot
Match: A0A6H5L009_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L009_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.680e-5
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1
Query:  202 VVLRNACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSK 345
            V LR +CD C R+KR CDG  PC+ C RR +PC  S ++KSGP KG+K
Sbjct:    8 VELRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTK 55          
BLAST of mRNA_H-paniculata_contig8489.16469.1 vs. uniprot
Match: F7W882_SORMK (WGS project CABT00000000 data, contig 2.43 n=1 Tax=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) TaxID=771870 RepID=F7W882_SORMK)

HSP 1 Score: 53.1 bits (126), Expect = 5.730e-5
Identity = 23/53 (43.40%), Postives = 31/53 (58.49%), Query Frame = 1
Query:  202 VVLRNACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSKRKLIA 360
              ++ ACDACHR K KCDG+ PC  C      C Y+   +   PKGS+ K+I+
Sbjct:    3 TAVKRACDACHRRKVKCDGINPCRNCHASQLTCTYNAIPQKKGPKGSRAKVIS 55          
BLAST of mRNA_H-paniculata_contig8489.16469.1 vs. uniprot
Match: D8LPZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ9_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 6.130e-5
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1
Query:  202 VVLRNACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSK 345
            V+LR +CD C R+KR CDG  PC+ C RR   C  S K+KSGP KG+K
Sbjct:   60 VLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTK 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8489.16469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JM19_9PHAE9.290e-6044.81Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LM00_ECTSI2.410e-5041.15Zn(2)-C6 fungal-type domain-containing protein (Fr... [more]
D7FPF9_ECTSI1.190e-551.85Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5L009_9PHAE2.680e-556.25Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
F7W882_SORMK5.730e-543.40WGS project CABT00000000 data, contig 2.43 n=1 Tax... [more]
D8LPZ9_ECTSI6.130e-556.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8489contigH-paniculata_contig8489:874..8231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-14_002300.1
Exons3
Model size3575
Cds size2721
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8489.16469.1prot_H-paniculata_contig8489.16469.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8489 1716..8219 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.412695-UTR-H-paniculata_contig8489:873..17151622931065.412695-UTR-H-paniculata_contig8489:873..1715Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8489 874..1715 -
1691481574.0600743-UTR-H-paniculata_contig8489:873..17151691481574.0600743-UTR-H-paniculata_contig8489:873..1715Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8489 874..1715 -
1622931065.5098116-UTR-H-paniculata_contig8489:8219..82311622931065.5098116-UTR-H-paniculata_contig8489:8219..8231Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8489 8220..8231 -
1691481574.1029844-UTR-H-paniculata_contig8489:8219..82311691481574.1029844-UTR-H-paniculata_contig8489:8219..8231Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8489 8220..8231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.43602-CDS-H-paniculata_contig8489:1715..25881622931065.43602-CDS-H-paniculata_contig8489:1715..2588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8489 1716..2588 -
1691481574.0714374-CDS-H-paniculata_contig8489:1715..25881691481574.0714374-CDS-H-paniculata_contig8489:1715..2588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8489 1716..2588 -
1622931065.462452-CDS-H-paniculata_contig8489:3837..55291622931065.462452-CDS-H-paniculata_contig8489:3837..5529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8489 3838..5529 -
1691481574.0794804-CDS-H-paniculata_contig8489:3837..55291691481574.0794804-CDS-H-paniculata_contig8489:3837..5529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8489 3838..5529 -
1622931065.4903643-CDS-H-paniculata_contig8489:8063..82191622931065.4903643-CDS-H-paniculata_contig8489:8063..8219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8489 8064..8219 -
1691481574.0899255-CDS-H-paniculata_contig8489:8063..82191691481574.0899255-CDS-H-paniculata_contig8489:8063..8219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8489 8064..8219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8489.16469.1

>prot_H-paniculata_contig8489.16469.1 ID=prot_H-paniculata_contig8489.16469.1|Name=mRNA_H-paniculata_contig8489.16469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=907bp
MRVGVGGLVMSGAASAAGSPGLDVGREDESETEKAQQRKQLASRKESSRS
QQPPEAASDRESLVVLRNACDACHRMKRKCDGLQPCNRCRRRSRPCGYSY
KQKSGPPKGSKRKLIAADEDLLENRQGRPKLLPLAMWPKDAEEERMTNAA
VAANAHRINQLIAVSTQTPPAQKPPQPPRLPGISIPPEGRASNGAGAAAA
AAAVAAASAVNNAGCSPRPESTSNATLGSLEQTNSSSNSNAAAAAAAVAA
AVAAATANAAANAKAAAANAAHEVNAANAATKAASDAQELDDRHAVNRLA
LPPEAAQLSLEARAGAYKRAQEAAAAGMAAAKAFVEDGYRKDDKDETTAA
NGAGVAPTTSTTVEQSPHQKQGVLGRLVSTSAPTEAKAMPLPLASVATFQ
PTTTGNLASPHENPAPSVAMLPLNFSPPRGTSAAGQPSSSPAAAAAAPGV
TAAPSATTRSAGSPSNAGQVAHPGMAAGGLPLPSGMPPGMPHMGMTMAYH
PQYGVYQPYPQSLYAAYLAQYQLQHGLNPYDGIPLYDGINPYLNAVYGHV
GAPGVAVGTPGVEAGQAQQGLAGVTAACPPLSVTAAAAAAIAAATQNAAA
AGGEKAQPKESEEAKQLAVETLLGLKNSQGSKGDAPDEASAQAMAAVTAA
AVSAAAAAAEESVAHGTIAGTEHGSTASAAAAAAAATAKAVAEAVAAAGG
LSTQMSPDQGSLNLPLVGEGKDTAGAATLLAESKQTLAAANGTEVTMLPS
GGTIYVGAVQAPVETEAKEVPKDDASGNNGHVVASNSAALARVEGGAEVL
SPQQWAPLHGGPEEASAGRRGEAAGGEVATAVRVASVAEPVRGEGSTETP
LSAVPAEARLPVAGAGAKVGHDAVTSAEPRAPAAATAESGISAAPHQTPR
TIVSTV*
back to top

mRNA from alignment at H-paniculata_contig8489:874..8231-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8489.16469.1 ID=mRNA_H-paniculata_contig8489.16469.1|Name=mRNA_H-paniculata_contig8489.16469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7358bp|location=Sequence derived from alignment at H-paniculata_contig8489:874..8231- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGGATTCCTATGAGGGTGGGTGTGGGAGGGTTGGTCATGTCCGGCGC AGCGTCGGCGGCGGGATCCCCTGGCTTAGATGTGGGTCGAGAGGATGAGA GCGAGACGGAGAAGGCGCAGCAGCGCAAGCAGCTGGCGAGTAGAAAGGAG AGCTCGCGATCGCAGCAGGTGTGTGTGTATGTGTGTATTGTGTGTCTGTT TGCGTGTCTTGCCTGTCTCCCTGTTTCTCTCATGCGCCCTATTTTTTGCT GCTCCAAAATTTTCCTCCTCCTTCCAGCAAGGCTATCGTATACATATTCA ATATCACGTTACACACGTGATGGGTTGATTTCTTTCCCTTCATTTTTACG GCTTTCACGCCTGGATTCGCGCATTGCCCACGCAAACTGGCCATCCTGAG TTGAAGATGGGACTTGGATAACCGATTTGTCAGCCTCGTGGAGGAAACAT GTGTTGCACGGCTGAGGGATGTAATAATGTAGCGAGCCCAAACAGATTGT GTGTGGCCATGCGCTCAATAATTTGGCGCTCCCTACAAGACATTATTTTG TGTGATTTTTTTCCCACCAAATATGAAGTGGCCTTGAGGTCGGTGTGTGT GCCCCTGGCCTCAACGGAACTTTTTCGATTAATCGCGTAGAGTCAAAAAA CAATTGAGCCCCACGTGCTATAGCTACTGTACTGCAGCGTGGTTTTCCAT CGTCTTGCTCGCATGGCATGGCTATTTTTGAGGTTTCGCCGCATTAATTC AGTTTTCAACTATCACGCCGCTTGTGTTTTGCGGAAAACTACACTGCAAA TGGCACCCAGGTTCGCGTAATCGGTGGCGCTATGGGAAGCGTTATATCCC AATGTGTGGGTTGTTTGTTTTGGAACCATCTCATTTCGAAGCTAAAGCGG TCAGCGTATGACCCAATTTTAGCCTCGCAAAACGATGCAATTTCCGTAAA TCTCCTTCGGTATATCTCCAATTGTGGGAGTGGGTGATGGAAAGGACGGC ATGGTGAAAATGCTGGCGTTGTGTTGTGTTTGGTGTCCTGTATTTATGTG TGTGTTCGTATACACCGTGCATGTTGCCGTCAAATCTGCGACGTTGTTTG CGCTGTTGACTATGTTCCCCAGAATTGTTGTTTTGTGGTGATCACAAAAT TGTGTCAAATTTGCCCCAATTTTTTTCCGAGTGTCCCAGGCTTCTTTGTT AATGTTCGATATCTCTGTCCTAATTCTGTCCCTTTGTCGCAATGACTGTG CATACCTCTATTGATAACAACCATCAACGGTGCAATATTTTACCCCGCGG ACAAATATGAATACTTGCATTTTTTTTTTTTTAACTGAAAGTATTCGCCT GAGTTTCAGAATGGGCTCGTGTGTTCTATGTGCCCCGAACCATCCACGAC TGCTAAAAAAACTCGTAAATCGAATGTACAGGGATGGGTATTTAGTTCTA TGTGTCCACATACTCTGAAACTCAGGCGAATACTTTCAGTTTTTTGTGAA AACTATTTGCAAGTATTCGTATCTGCGCGGGGGTGCAATATTTACAAAAA AAATGAAAATAAAAACAAGCGGAAGATGTCGGCAGTTGATACATTGAAGT ATACGTAAAAAACACCGCAAAAGTTCACGTCTGACTCATGAAGCGTTTCA AGCTAATATTGCAGTGTTGGTTCCAGCCGATCATTCATTTCTTTGACACT TGGCCCACGTTTTTCGAGTCCTGGCTTCACCTGTTGTCTTACGAGGCGTA GACTTGCAGTTTGTTCCGGATTTTGTTGGTCCTTGTTGAGTGAATAGTCC ATGTTCATACCGTATGGCGTAGTGAATATTTTAGTACATTCACCGATGTG TTTGTATGTAGCGAAGTACAGTATGCTCAAACTACTGTATTTGTTTATCT ATGCACTCTAGTACAGTCAATACAGTACGCCAGTCAGGCGCGATACAGTA CATCACAGTGTAACAAAATCAGCCATGGGAGGCATTAGTCAGTAGTATAT TGCAGTCACAGTACAGTCATAGAGTGCCTTTCATATGCAGTGTCGTTTAT TTCCAACAAAACGTTTGGTCAAGTATGCGGGTCGTATACTGTATGTAAAA TTAATGTTGAAAAAATCACACATACGGGAGGTGTTGCTGTCGTTCTTTTG CTTTGGGCTTCCCCGTGTGATGTGGGCTGTGGACCTCTCCGCTGGTGCAA TAATCGTGCGATGATTACTTGTCTTGTCATGTCTCGGTGGTGGCTATTGT AGTGGCTATTCATTTCATTCGGTCTCTAGTCGGTGAATTCGCAAAGCGTC ACATCATAGTTTCACGCACCTGGTGTAGCAGACTTGCCAGGACTAAGCGG CTTAGGTCTGACGAATGTTTGTTCATTGGTACATGTTAGACACTATGTGG AAGAGTGTGCTGTACCTGCCTGAAGTAATGTGCTCTCGTTTTTCCTGGAA ATACAAAAATCTAATCCTGTTGCGAGATGCTACAGCTCGTAAAAGTTATA TTCGATAGTTGGGACAAGTTCAAAGAGCATGTGCAGGCTACACGTGTCGT AGATACCCCTTTGTGTTCAAGGTTAGCTGCTTGCAAACGGCTGATGTACC TATTCTGCTGATCTCTATGTATTACACTTTACCGAAACGACTCGTTTTCC CCGTGACTGCGATTTCCGCCACTATCTCCGGTTTTTTTTTTTGTATATGC AGCCACCCGAGGCCGCCAGCGATCGCGAATCCTTGGTCGTCCTGCGCAAC GCATGCGACGCGTGCCACCGCATGAAGCGCAAATGCGACGGTTTGCAGCC GTGCAATCGATGCCGGCGCCGCAGCCGCCCGTGCGGCTACAGCTACAAGC AGAAGTCGGGTCCACCCAAGGGCAGCAAACGTAAGCTCATCGCGGCAGAT GAGGACCTGCTCGAGAACCGCCAGGGACGGCCCAAGCTCCTACCGTTGGC CATGTGGCCAAAGGATGCCGAAGAGGAGCGCATGACTAACGCAGCGGTGG CGGCTAACGCGCACCGTATTAACCAACTCATAGCCGTTAGTACGCAAACA CCCCCAGCACAGAAGCCTCCCCAGCCCCCGAGGCTACCAGGGATCTCCAT TCCGCCGGAGGGCAGGGCTAGTAACGGAGCTGGAGCAGCGGCCGCGGCCG CCGCTGTGGCCGCCGCCTCCGCCGTCAACAACGCAGGTTGTTCACCGCGA CCCGAGTCTACCTCGAACGCGACGTTGGGTAGCTTGGAGCAAACGAATTC AAGTAGTAACTCTAATGCGGCCGCCGCCGCCGCCGCCGTCGCTGCTGCTG TTGCTGCCGCTACCGCCAACGCTGCGGCAAATGCGAAAGCTGCCGCCGCC AATGCCGCACACGAAGTCAATGCTGCCAACGCAGCTACCAAGGCCGCCAG TGACGCGCAAGAGTTGGACGACAGACACGCTGTGAACAGGCTCGCGCTTC CTCCCGAGGCGGCGCAACTTTCTCTAGAGGCGCGGGCGGGGGCCTACAAA AGAGCGCAGGAGGCGGCGGCGGCGGGAATGGCGGCCGCGAAAGCGTTCGT AGAGGACGGTTACCGGAAAGATGATAAAGATGAAACCACGGCCGCCAACG GTGCCGGCGTGGCACCGACGACCTCGACGACGGTGGAGCAGTCGCCCCAT CAAAAGCAAGGTGTATTGGGGCGGCTTGTTTCAACGTCGGCTCCTACAGA GGCAAAAGCGATGCCATTGCCGTTGGCATCCGTGGCGACGTTCCAACCGA CAACGACTGGAAATCTGGCGTCTCCACACGAGAACCCTGCCCCGTCGGTC GCGATGCTCCCGCTTAACTTCTCGCCGCCGCGTGGGACCTCCGCCGCAGG CCAGCCGAGCTCGTCACCCGCTGCCGCTGCTGCTGCGCCGGGCGTCACTG CTGCGCCTTCCGCGACCACGCGATCGGCGGGGAGCCCTTCGAACGCCGGA CAGGTGGCGCACCCCGGGATGGCGGCGGGCGGCCTGCCATTGCCATCTGG CATGCCTCCTGGCATGCCTCACATGGGCATGACCATGGCGTACCACCCGC AGTACGGTGTATACCAGCCCTACCCACAGTCGCTCTATGCGGCTTACCTT GCCCAGTACCAGCTCCAGCATGGCCTGAACCCCTACGATGGAATTCCCCT TTACGATGGCATCAATCCGTATTTGAACGCCGTGTATGGACATGTCGGTG CGCCTGGAGTTGCCGTCGGGACTCCCGGGGTGGAGGCCGGGCAGGCGCAA CAAGGGTTGGCCGGCGTAACCGCAGCTTGTCCACCTCTGTCGGTTACTGC GGCCGCCGCTGCCGCGATAGCCGCCGCCACGCAGAACGCTGCCGCAGCCG GCGGTGAGAAGGCCCAGCCAAAGGAGAGCGAGGAAGCGAAGCAGGTGTCT GTGTCTGTGTCTGTGTGAGAGCGCCTTCCTCTCTTGTGTCTTGGCATTTT TTTTACCGTTTTTTATGTAGGTGAGCCCCCAAGGGTTGGTGCACATGATG CCGTCTTATAACGTAGGATATGTAGTGTTGTACAGTTGGGCAGTATGCAC CGCGATAGCTGAGGGGTGTGTGACTCGTGCAGAAATTCAGGTTAGCGTTC GCGGTGTTGTGTTGAACCCGTTATTTTTCACGGAGCGGCCACGCACGTTT TCGGTTTCTTGTGCAGTGTGCGCAAGTGATTTAGCTGTCGTTACACATGC GATGACGCAGGTGAGGAGTGCGTGTGTGACTCGGTGATGCTGCTTGATAG TTTCACATGATCTCTTGCCATGCTTACGGGATCCGTCTTGTGTTCGTTGG CCCCGATCAAACCCTTGCCTATTCAACCTCACCGCGTATCTCGCCACTGC TCTCTCTCCATGCGTTTCGGTGATCGATATTCGCCGAGCTCCACCACCTT GTGCAAATTTCCATACCCCTCAAGCCTAAGAGAAGCAAGACCACGTACTC CCAACGACAAGCCGCGAACGATTTTGTTTTTTAATCTTTGAAGGAGAGGA GGAAACCTTTGCCCAACACTTACCCCGAGATCGGGTTTGTGTGTCGGTTA CCCGAAGGTCCGACTAGACTGCCGCGCGGCAGTCATGTGAGGTAGGCATC CCGAGGGTTTGTATGACTTTGCTCAGGGTAGTGTGGGACTCTCGCCTCCA TGTTGATTCCCCCAAATTGGTGCAGTACACGTACCGCCCTGCTCGAGCGA CTTTCGACCCTAGGTGGTAGTGAGACACCAGCGCCTGCGTTTCAATATCT GTATTATGTGTGCTCTCACCCTCACAACTGCAGCTAAAAATTTGGCCACC CGTAGGCAACCGCTGTCACGCACCCAAGGAGGCATCGATTGCGTGAGGTC AGGACCCTGCTTTTCCTCAGGGGCCGGAACCGGTTCGCTTGCGACCCGGT ACCCGGTACCCGTCGGCGTCGCCGGAGCTCCCCACCCTGGTAACCGTGCC TCACTAAGTTCCCTACCTAGGAGCAGAAGCCGCGGATGATAAATAGGCGT GTACTGTCGTGTTGTTTCAAAGATTTCCTCTTTCAAATAAGAATACGTAT CAAGCTAATCCTCTTAATCGCCACTAATCGCTTCCTACCCCCTCCCCCCC TCCCCCCCTTTCCCCCTGGCGCTCCACGCATATGACCCGACAGCTCGCAG TGGAAACGCTTCTCGGACTCAAGAACTCTCAAGGGTCCAAAGGTGACGCG CCAGACGAAGCGTCCGCCCAGGCTATGGCAGCCGTCACTGCTGCCGCGGT CTCCGCCGCCGCTGCAGCGGCCGAAGAGTCCGTGGCGCACGGAACCATTG CTGGTACGGAACACGGAAGCACCGCCTCAGCAGCAGCGGCGGCGGCGGCG GCGACTGCCAAGGCGGTGGCGGAAGCTGTCGCGGCGGCTGGCGGCCTCTC AACCCAAATGAGTCCCGATCAGGGATCACTGAACCTGCCTCTCGTCGGCG AAGGTAAGGACACCGCCGGGGCTGCAACTCTTCTTGCTGAAAGTAAGCAA ACGTTGGCGGCGGCGAACGGAACGGAAGTAACCATGCTGCCGTCAGGGGG CACAATTTATGTTGGGGCGGTTCAAGCTCCAGTGGAAACCGAAGCGAAGG AAGTTCCAAAAGATGACGCCAGTGGGAACAACGGACACGTGGTGGCATCG AACTCAGCAGCTCTAGCTCGTGTGGAGGGGGGGGCAGAGGTCCTGTCCCC ACAGCAGTGGGCACCATTACATGGAGGCCCAGAGGAGGCAAGCGCCGGGC GAAGGGGAGAAGCAGCGGGGGGAGAAGTGGCAACGGCGGTGAGGGTGGCT TCAGTGGCAGAACCGGTACGCGGTGAGGGCTCGACCGAAACACCCTTGTC AGCAGTACCCGCTGAGGCACGACTGCCGGTGGCCGGGGCTGGGGCGAAGG TTGGACACGACGCCGTGACATCGGCAGAGCCAAGGGCACCGGCGGCGGCA ACGGCGGAGTCTGGCATCAGCGCAGCGCCGCACCAAACACCCCGTACCAT CGTGTCTACTGTGTAGGGTATCATCACCTGGTAGGAGAAATCTTCAGGTC GTCGGCCGCAAAAGAGTTTTATTTTTTGCGGTAGGTATTTGGAAGGGTTG TGGAGATGGGAGTCTTGGAGTTGGGAGAGGTAAGGGCTCAGTGGTAAACC GCGGGTGGTATTCTCTTTTTGTCGCCGCCGATTGTTTCATTTATTGTGAT ATCGACAGATACAGCTCTTTAACGGTGCGGCGAGGGGAACCTTGTTTCTG TTTCCTCAGAGAACGTTTTTTAGGCGCATGTTTGCCCCCATTGCTGGCAA GTGCATCTTACGTGCAGAATAACAGCATGCCAACATGCAGCTCGGCCGGG AGTGCAAGGGGCATCGAGAAGGGAGTGCCATAATGTTCTTTTGCGTGCAT GATAACGGTGCGTACGGTTGTATTTTGGGTCGAGACAATGAAGGAAAGGG GCAGTAGCTGCTGACACCAACGGGGGCAAATCAGTGTGTGGATGCGGTGG GGAAATCATACATTTTCTTTCTCTAGTGGTGTTAGGCGTATAAAGTAGAA GCAAATCGGGCAGCGGAGCATGTACCCGAGGTAGTATAGCAGCAGGCACA TGCTGGCGTCTGTAGCAGGTGTTCTGAAGGTTAAAGCTGAGCGTTCCTTT GACTGTTGTCGGGATGCCCGGCAGTCTATTTTTATCACGCGGTACGTACG GCATTGCCCTTTTAATGGAATCCTCTTGTATCTATATTTTTAGCCAATAA TTTGGACTGACTGCAGCAGCTGCTATTGCTCGGCCTATCGTTCATTTGGA CGAGACGAAGATGTGCTTTGTGTCGTGAGAGCGAGCTGTGGAACGAATTG AAAATCCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8489:874..8231-

>mRNA_H-paniculata_contig8489.16469.1 ID=mRNA_H-paniculata_contig8489.16469.1|Name=mRNA_H-paniculata_contig8489.16469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5442bp|location=Sequence derived from alignment at H-paniculata_contig8489:874..8231- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGTGGGTGTGGGAGGGTTGGTCATGTCCGGCGCAGCGTCGGCGGC
GGGATCCCCTGGCTTAGATGTGGGTCGAGAGGATGAGAGCGAGACGGAGA
AGGCGCAGCAGCGCAAGCAGCTGGCGAGTAGAAAGGAGAGCTCGCGATCG
CAGCAGATGAGGGTGGGTGTGGGAGGGTTGGTCATGTCCGGCGCAGCGTC
GGCGGCGGGATCCCCTGGCTTAGATGTGGGTCGAGAGGATGAGAGCGAGA
CGGAGAAGGCGCAGCAGCGCAAGCAGCTGGCGAGTAGAAAGGAGAGCTCG
CGATCGCAGCAGCCACCCGAGGCCGCCAGCGATCGCGAATCCTTGGTCGT
CCTGCGCAACGCATGCGACGCGTGCCACCGCATGAAGCGCAAATGCGACG
GTTTGCAGCCGTGCAATCGATGCCGGCGCCGCAGCCGCCCGTGCGGCTAC
AGCTACAAGCAGAAGTCGGGTCCACCCAAGGGCAGCAAACGTAAGCTCAT
CGCGGCAGATGAGGACCTGCTCGAGAACCGCCAGGGACGGCCCAAGCTCC
TACCGTTGGCCATGTGGCCAAAGGATGCCGAAGAGGAGCGCATGACTAAC
GCAGCGGTGGCGGCTAACGCGCACCGTATTAACCAACTCATAGCCGTTAG
TACGCAAACACCCCCAGCACAGAAGCCTCCCCAGCCCCCGAGGCTACCAG
GGATCTCCATTCCGCCGGAGGGCAGGGCTAGTAACGGAGCTGGAGCAGCG
GCCGCGGCCGCCGCTGTGGCCGCCGCCTCCGCCGTCAACAACGCAGGTTG
TTCACCGCGACCCGAGTCTACCTCGAACGCGACGTTGGGTAGCTTGGAGC
AAACGAATTCAAGTAGTAACTCTAATGCGGCCGCCGCCGCCGCCGCCGTC
GCTGCTGCTGTTGCTGCCGCTACCGCCAACGCTGCGGCAAATGCGAAAGC
TGCCGCCGCCAATGCCGCACACGAAGTCAATGCTGCCAACGCAGCTACCA
AGGCCGCCAGTGACGCGCAAGAGTTGGACGACAGACACGCTGTGAACAGG
CTCGCGCTTCCTCCCGAGGCGGCGCAACTTTCTCTAGAGGCGCGGGCGGG
GGCCTACAAAAGAGCGCAGGAGGCGGCGGCGGCGGGAATGGCGGCCGCGA
AAGCGTTCGTAGAGGACGGTTACCGGAAAGATGATAAAGATGAAACCACG
GCCGCCAACGGTGCCGGCGTGGCACCGACGACCTCGACGACGGTGGAGCA
GTCGCCCCATCAAAAGCAAGGTGTATTGGGGCGGCTTGTTTCAACGTCGG
CTCCTACAGAGGCAAAAGCGATGCCATTGCCGTTGGCATCCGTGGCGACG
TTCCAACCGACAACGACTGGAAATCTGGCGTCTCCACACGAGAACCCTGC
CCCGTCGGTCGCGATGCTCCCGCTTAACTTCTCGCCGCCGCGTGGGACCT
CCGCCGCAGGCCAGCCGAGCTCGTCACCCGCTGCCGCTGCTGCTGCGCCG
GGCGTCACTGCTGCGCCTTCCGCGACCACGCGATCGGCGGGGAGCCCTTC
GAACGCCGGACAGGTGGCGCACCCCGGGATGGCGGCGGGCGGCCTGCCAT
TGCCATCTGGCATGCCTCCTGGCATGCCTCACATGGGCATGACCATGGCG
TACCACCCGCAGTACGGTGTATACCAGCCCTACCCACAGTCGCTCTATGC
GGCTTACCTTGCCCAGTACCAGCTCCAGCATGGCCTGAACCCCTACGATG
GAATTCCCCTTTACGATGGCATCAATCCGTATTTGAACGCCGTGTATGGA
CATGTCGGTGCGCCTGGAGTTGCCGTCGGGACTCCCGGGGTGGAGGCCGG
GCAGGCGCAACAAGGGTTGGCCGGCGTAACCGCAGCTTGTCCACCTCTGT
CGGTTACTGCGGCCGCCGCTGCCGCGATAGCCGCCGCCACGCAGAACGCT
GCCGCAGCCGGCGGTGAGAAGGCCCAGCCAAAGGAGAGCGAGGAAGCGAA
GCAGCCACCCGAGGCCGCCAGCGATCGCGAATCCTTGGTCGTCCTGCGCA
ACGCATGCGACGCGTGCCACCGCATGAAGCGCAAATGCGACGGTTTGCAG
CCGTGCAATCGATGCCGGCGCCGCAGCCGCCCGTGCGGCTACAGCTACAA
GCAGAAGTCGGGTCCACCCAAGGGCAGCAAACGTAAGCTCATCGCGGCAG
ATGAGGACCTGCTCGAGAACCGCCAGGGACGGCCCAAGCTCCTACCGTTG
GCCATGTGGCCAAAGGATGCCGAAGAGGAGCGCATGACTAACGCAGCGGT
GGCGGCTAACGCGCACCGTATTAACCAACTCATAGCCGTTAGTACGCAAA
CACCCCCAGCACAGAAGCCTCCCCAGCCCCCGAGGCTACCAGGGATCTCC
ATTCCGCCGGAGGGCAGGGCTAGTAACGGAGCTGGAGCAGCGGCCGCGGC
CGCCGCTGTGGCCGCCGCCTCCGCCGTCAACAACGCAGGTTGTTCACCGC
GACCCGAGTCTACCTCGAACGCGACGTTGGGTAGCTTGGAGCAAACGAAT
TCAAGTAGTAACTCTAATGCGGCCGCCGCCGCCGCCGCCGTCGCTGCTGC
TGTTGCTGCCGCTACCGCCAACGCTGCGGCAAATGCGAAAGCTGCCGCCG
CCAATGCCGCACACGAAGTCAATGCTGCCAACGCAGCTACCAAGGCCGCC
AGTGACGCGCAAGAGTTGGACGACAGACACGCTGTGAACAGGCTCGCGCT
TCCTCCCGAGGCGGCGCAACTTTCTCTAGAGGCGCGGGCGGGGGCCTACA
AAAGAGCGCAGGAGGCGGCGGCGGCGGGAATGGCGGCCGCGAAAGCGTTC
GTAGAGGACGGTTACCGGAAAGATGATAAAGATGAAACCACGGCCGCCAA
CGGTGCCGGCGTGGCACCGACGACCTCGACGACGGTGGAGCAGTCGCCCC
ATCAAAAGCAAGGTGTATTGGGGCGGCTTGTTTCAACGTCGGCTCCTACA
GAGGCAAAAGCGATGCCATTGCCGTTGGCATCCGTGGCGACGTTCCAACC
GACAACGACTGGAAATCTGGCGTCTCCACACGAGAACCCTGCCCCGTCGG
TCGCGATGCTCCCGCTTAACTTCTCGCCGCCGCGTGGGACCTCCGCCGCA
GGCCAGCCGAGCTCGTCACCCGCTGCCGCTGCTGCTGCGCCGGGCGTCAC
TGCTGCGCCTTCCGCGACCACGCGATCGGCGGGGAGCCCTTCGAACGCCG
GACAGGTGGCGCACCCCGGGATGGCGGCGGGCGGCCTGCCATTGCCATCT
GGCATGCCTCCTGGCATGCCTCACATGGGCATGACCATGGCGTACCACCC
GCAGTACGGTGTATACCAGCCCTACCCACAGTCGCTCTATGCGGCTTACC
TTGCCCAGTACCAGCTCCAGCATGGCCTGAACCCCTACGATGGAATTCCC
CTTTACGATGGCATCAATCCGTATTTGAACGCCGTGTATGGACATGTCGG
TGCGCCTGGAGTTGCCGTCGGGACTCCCGGGGTGGAGGCCGGGCAGGCGC
AACAAGGGTTGGCCGGCGTAACCGCAGCTTGTCCACCTCTGTCGGTTACT
GCGGCCGCCGCTGCCGCGATAGCCGCCGCCACGCAGAACGCTGCCGCAGC
CGGCGGTGAGAAGGCCCAGCCAAAGGAGAGCGAGGAAGCGAAGCAGCTCG
CAGTGGAAACGCTTCTCGGACTCAAGAACTCTCAAGGGTCCAAAGGTGAC
GCGCCAGACGAAGCGTCCGCCCAGGCTATGGCAGCCGTCACTGCTGCCGC
GGTCTCCGCCGCCGCTGCAGCGGCCGAAGAGTCCGTGGCGCACGGAACCA
TTGCTGGTACGGAACACGGAAGCACCGCCTCAGCAGCAGCGGCGGCGGCG
GCGGCGACTGCCAAGGCGGTGGCGGAAGCTGTCGCGGCGGCTGGCGGCCT
CTCAACCCAAATGAGTCCCGATCAGGGATCACTGAACCTGCCTCTCGTCG
GCGAAGGTAAGGACACCGCCGGGGCTGCAACTCTTCTTGCTGAAAGTAAG
CAAACGTTGGCGGCGGCGAACGGAACGGAAGTAACCATGCTGCCGTCAGG
GGGCACAATTTATGTTGGGGCGGTTCAAGCTCCAGTGGAAACCGAAGCGA
AGGAAGTTCCAAAAGATGACGCCAGTGGGAACAACGGACACGTGGTGGCA
TCGAACTCAGCAGCTCTAGCTCGTGTGGAGGGGGGGGCAGAGGTCCTGTC
CCCACAGCAGTGGGCACCATTACATGGAGGCCCAGAGGAGGCAAGCGCCG
GGCGAAGGGGAGAAGCAGCGGGGGGAGAAGTGGCAACGGCGGTGAGGGTG
GCTTCAGTGGCAGAACCGGTACGCGGTGAGGGCTCGACCGAAACACCCTT
GTCAGCAGTACCCGCTGAGGCACGACTGCCGGTGGCCGGGGCTGGGGCGA
AGGTTGGACACGACGCCGTGACATCGGCAGAGCCAAGGGCACCGGCGGCG
GCAACGGCGGAGTCTGGCATCAGCGCAGCGCCGCACCAAACACCCCGTAC
CATCGTGTCTACTGTGTAGCTCGCAGTGGAAACGCTTCTCGGACTCAAGA
ACTCTCAAGGGTCCAAAGGTGACGCGCCAGACGAAGCGTCCGCCCAGGCT
ATGGCAGCCGTCACTGCTGCCGCGGTCTCCGCCGCCGCTGCAGCGGCCGA
AGAGTCCGTGGCGCACGGAACCATTGCTGGTACGGAACACGGAAGCACCG
CCTCAGCAGCAGCGGCGGCGGCGGCGGCGACTGCCAAGGCGGTGGCGGAA
GCTGTCGCGGCGGCTGGCGGCCTCTCAACCCAAATGAGTCCCGATCAGGG
ATCACTGAACCTGCCTCTCGTCGGCGAAGGTAAGGACACCGCCGGGGCTG
CAACTCTTCTTGCTGAAAGTAAGCAAACGTTGGCGGCGGCGAACGGAACG
GAAGTAACCATGCTGCCGTCAGGGGGCACAATTTATGTTGGGGCGGTTCA
AGCTCCAGTGGAAACCGAAGCGAAGGAAGTTCCAAAAGATGACGCCAGTG
GGAACAACGGACACGTGGTGGCATCGAACTCAGCAGCTCTAGCTCGTGTG
GAGGGGGGGGCAGAGGTCCTGTCCCCACAGCAGTGGGCACCATTACATGG
AGGCCCAGAGGAGGCAAGCGCCGGGCGAAGGGGAGAAGCAGCGGGGGGAG
AAGTGGCAACGGCGGTGAGGGTGGCTTCAGTGGCAGAACCGGTACGCGGT
GAGGGCTCGACCGAAACACCCTTGTCAGCAGTACCCGCTGAGGCACGACT
GCCGGTGGCCGGGGCTGGGGCGAAGGTTGGACACGACGCCGTGACATCGG
CAGAGCCAAGGGCACCGGCGGCGGCAACGGCGGAGTCTGGCATCAGCGCA
GCGCCGCACCAAACACCCCGTACCATCGTGTCTACTGTGTAG
back to top