mRNA_H-paniculata_contig8468.16458.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8468.16458.1
Unique NamemRNA_H-paniculata_contig8468.16458.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8468.16458.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 4.530e-60
Identity = 98/224 (43.75%), Postives = 139/224 (62.05%), Query Frame = 2
Query:  593 PTLAYEATVDHWGQVLGMTKEIAGAVNDKSIVRFDKTVQAVRDGEPYRSMAYKLCDKDGVEQVEKVVYLIVDGGYHRWRSLVCPAKEAATREELAWSKYLESVRKNVECIFGILKGRFRILKLPIIFRESAQVDTVVWTCCILHNMLHSFDGLKLHEPDMDWAGPDGHIDAWLHDDRTMNFGINGRISSGPPERVDVEDGFFAMRRKLVSHYTNRVENNEVAWL 1264
            PT+AY+ TVDH  +VL +T    G+ NDKSI+R+D  V  +R+   Y    + + + DG     K  YL+VD GYH+W +L+ P+K    + +LA+SK LESVRK+VEC FGI+KG FRILKL I + +   +D V +TCCILHNMLHS+D     E + +WAG  G  +AW H+       +  + SS   E V+VE GF   R++L++ +  R   N++AWL
Sbjct:   17 PTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWL 240          
BLAST of mRNA_H-paniculata_contig8468.16458.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 2.980e-58
Identity = 99/224 (44.20%), Postives = 140/224 (62.50%), Query Frame = 2
Query:  593 PTLAYEATVDHWGQVLGMTKEIAGAVNDKSIVRFDKTVQAVRDGEPYRSMAYKLCDKDGVEQVEKVVYLIVDGGYHRWRSLVCPAKEAATREELAWSKYLESVRKNVECIFGILKGRFRILKLPIIFRESAQVDTVVWTCCILHNMLHSFDGLKLHEPDMDWAGPDGHIDAWLHDDRTMNFGINGRISSGPPERVDVEDGFFAMRRKLVSHYTNRVENNEVAWL 1264
            PT+AY+ TVDH  +VL +T    G+ NDKSI+R+D  V  +R+   Y    + + + DG     K  YL+VD GYH+W +L+ P+K    + +LA+SK LESVRK+VEC FGI+KGRFRILKL I + +   +D V +TCCILHNMLHS+D     E + +WAG  G  +AW H+       +  + SS   E V+VE GF   R++L++ +  R   N++AWL
Sbjct:  258 PTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWL 481          
BLAST of mRNA_H-paniculata_contig8468.16458.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 6.220e-58
Identity = 97/237 (40.93%), Postives = 141/237 (59.49%), Query Frame = 2
Query:  593 PTLAYEATVDHWGQVLGMTKEIAGAVNDKSIVRFDKTVQAVRDGEPYRSMAYKLCDKDGVEQVEKVVYLIVDGGYHRWRSLVCPAKEAATREELAWSKYLESVRKNVECIFGILKGRFRILKLPIIFRESAQVDTVVWTCCILHNMLHSFDGLKLHEPDMDWAGPDGHIDAWLHDDRTMNFGINGR-ISSGPPERVDVEDG------------FFAMRRKLVSHYTNRVENNEVAWL 1264
            PT+AYE TVDH G+ L +T    GA NDK+I+R+D  V  +R    Y    YKL   +G E+  +  +LI+D  YH W +L+ P+K   + ++ A+S++LESVRK+VEC FGILKGRFRILKL + + +   +D + +TCCILHNMLH+FDGL + + + DW G  GH DAW HD  T    +  + +   P E  + E G               ++R+L+  +  R + N++ WL
Sbjct:   17 PTIAYEVTVDHVGRALAVTNGFTGATNDKTIIRYDSGVNNIRTESQYTEREYKLRKVNGTERTRRGCFLIMDNWYHEWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFDENTDWTGSAGHHDAWEHDPLTDYTSVGSKGVLLLPKEGEEEECGEGGHVRKERHPDHAELKRQLIESFAFRKKINDITWL 253          
BLAST of mRNA_H-paniculata_contig8468.16458.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 3.760e-57
Identity = 106/225 (47.11%), Postives = 140/225 (62.22%), Query Frame = 2
Query:  593 PTLAYEATVDHWGQVLGMTKEIAGAVNDKSIVRFDKTVQAVRDGEPYRSMAYKLCDKDGVEQVEKVVYLIVDGGYHRWRSLVCPAKEAATREELAWSKYLESVRKNVECIFGILKGRFRILKLPIIFRESAQVDTVVWTCCILHNMLHSFDGLKLHEPDMDWAGPDGHIDAWLHDDRTMNFGINGRISSGPPERVDVEDGFFAMRRKLVSHYTNRVENN-EVAWL 1264
            PT+A++ TVDH G+VL +T+   GA NDK+I+R+DK V  +R    Y    YKL  +DG +  EK  YL+VD GYH+WR+L+ P+K    R +L +SK LES RK+VEC FGILKGRFRI KL I F +   +D V +TCCILHNMLHSFD       + +WAG  G  +A   D  T    +      G  E V+VE GF A+R KLV+++  R E   ++ WL
Sbjct:  183 PTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAADRDPNTDYSSVGSM--DGQHEAVEVETGFGALRSKLVTNFVYRREKKRDIVWL 405          
BLAST of mRNA_H-paniculata_contig8468.16458.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 3.210e-56
Identity = 106/225 (47.11%), Postives = 140/225 (62.22%), Query Frame = 2
Query:  593 PTLAYEATVDHWGQVLGMTKEIAGAVNDKSIVRFDKTVQAVRDGEPYRSMAYKLCDKDGVEQVEKVVYLIVDGGYHRWRSLVCPAKEAATREELAWSKYLESVRKNVECIFGILKGRFRILKLPIIFRESAQVDTVVWTCCILHNMLHSFDGLKLHEPDMDWAGPDGHIDAWLHDDRTMNFGINGRISSGPPERVDVEDGFFAMRRKLVSHYTNRVENN-EVAWL 1264
            PT+A++ TVDH G+VL +T+   GA NDK+I+R+DK V  +R    Y    YKL  +DG +  EK  YL+VD GYH+WR+L+ P+K    R +L +SK LES RK+VEC FGILKGRFRI KL I F +   +D V +TCCILHNMLHSFD       + +WAG  G  +A   D  T    +      G  E V+VE GF A+R KLV+++  R E   ++ WL
Sbjct:  274 PTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAADRDPNTDYSSVGSM--DGQHEAVEVETGFGALRSKLVTNFVYRREKKRDIVWL 496          
BLAST of mRNA_H-paniculata_contig8468.16458.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 1.150e-51
Identity = 97/225 (43.11%), Postives = 139/225 (61.78%), Query Frame = 2
Query:  596 TLAYEATVDHWGQVLGMTKEIAGAVNDKSIVRFDKTVQAVRDGEPYRSMAYKLCDKDGVEQVEKVVYLIVDGGYHRWRSLVCPAKEAATREELAWSKYLESVRKNVECIFGILKGRFRILKLPIIFRESAQVDTVVWTCCILHNMLHSFDGLKLHEPDMDWAGPDGHIDAWLHDDRTMNFGINGRISSGPPERVDVEDGFFAMRRKLVSHYTNRVENNEVAWLRS 1270
            T+A+E   DH  + LG++K   GA+NDK+IV FD+ V+ ++     + + + L  +DG E  E+ +YLIVDGGYH+     CP +   T++ELA+ K LESVRK++EC FGILKGRFRILK+P+++R   ++D +  TCC LHNMLHS+DGL L E D +WAG DG +D W+      +   N       P+    ED F  ++ KLV++     +   V W RS
Sbjct:  233 TVAFEVVCDHKLRCLGVSKAFPGAMNDKTIVMFDEYVRRIKT--ECKDVPFTLLGEDGSEFEERGLYLIVDGGYHK-----CPVQFPVTQDELAFRKQLESVRKDIECFFGILKGRFRILKMPLLYRGIHKLDCIFQTCCALHNMLHSYDGLSLLEKDCEWAGADGDLDPWVTTPEAESAADNS------PDLHLFEDDFKDLQGKLVTNLAEMKKRGTVGWRRS 444          
BLAST of mRNA_H-paniculata_contig8468.16458.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 5.340e-51
Identity = 96/227 (42.29%), Postives = 140/227 (61.67%), Query Frame = 2
Query:  596 TLAYEATVDHWGQVLGMTKEIAGAVNDKSIVRFDKTVQAVRDGEPYRSMAYKLCDKDGVEQVEKVVYLIVDGGYHRWRSLVCPAKEAATREELAWSKYLESVRKNVECIFGILKGRFRILKLPIIFRESAQVDTVVWTCCILHNMLHSFDGLKLHEPDMDWAGPDGHIDAWLHDDRTMNFGINGRISSGPPER--VDVEDGFFAMRRKLVSHYTNRVENNEVAWLRS 1270
            TL +   V H  +VL  T+   GA NDK+I++FDK   AVR+G  Y+ + Y L  +DG +  EK  +LIVDGGYH W+ L  P +  + + E  + + LESVRK+ EC FG++KGRFRI K+  ++R+  ++D + +TC ILHNML ++DG++L EPD DWAG DG +D  +            R+S+   E   V+ +DGF A+R+KLV+++  R     V W RS
Sbjct:  235 TLVFNVAVSHDMRVLSCTRGFPGAQNDKTIIKFDKFAMAVRNGW-YKDVEYTLKGEDGADIKEKGPWLIVDGGYHNWKQLQSPIRAPSNKAESGFKRQLESVRKDSECCFGVVKGRFRICKMQFLYRKKERIDNIFFTCIILHNMLLAYDGIELLEPDCDWAGADGDLDKNIEHPVV-------RMSAPTHEDAVVECDDGFDALRQKLVTNFAYRWGQGTVGWKRS 453          
BLAST of mRNA_H-paniculata_contig8468.16458.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 5.720e-49
Identity = 92/237 (38.82%), Postives = 134/237 (56.54%), Query Frame = 2
Query:  593 PTLAYEATVDHWGQVLGMTKEIAGAVNDKSIVRFDKTVQAVRDGEPYRSMAYKLCDKDGVEQVEKVVYLIVDGGYHRWRSLVCPAKEAATREELAWSKYLESVRKNVECIFGILKGRFRILKLPIIFRESAQVDTVVWTCCILHNMLHSFDGLKLHEPDMDWAGPDGHIDAWLHDDRTMNFGINGRISSGPP---ERVDVEDGFFA----------MRRKLVSHYTNRVENNEVAWL 1264
            PT+AY+ TVDH G+ L +T    GA NDK+I+R+D  V  +R    Y    YKL   +G +++ +  +LIVD GYH W +L+ P+K     E+ A+S+ LESVRK+V C        FRILKL + + +   VD + +TCCILHNMLH+FDGL + E + DW G  GH DAW HD  T    +  +    PP   E+ +  +G             ++R+L+  +  R + N++ WL
Sbjct:  136 PTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGC--------FRILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLDVFEENTDWTGSAGHHDAWEHDPLTDYTSVGSKGVLLPPKEGEKAECGEGGHVRKERHPDHAELKRQLIESFAFRKKINDITWL 364          
BLAST of mRNA_H-paniculata_contig8468.16458.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 2.200e-48
Identity = 95/213 (44.60%), Postives = 127/213 (59.62%), Query Frame = 2
Query:  596 TLAYEATVDHWGQVLGMTKEIAGAVNDKSIVRFDKTVQAVRDGEPYRSMAYKLCDKDGVEQVEKVVYLIVDGGYHRWRSLVCPAKEAATREELAWSKYLESVRKNVECIFGILKGRFRILKLPIIFRESAQVDTVVWTCCILHNMLHSFDGLKLHEPDMDWAGPDGHIDAWLHDDRTMNFGINGRISSGPPERVDVEDG---FFAMRRKLVSH 1225
            TL YEA+ DH G++L  TK   GA NDK++V+ D +V  +R+ EP+ S  + L D +G        +LIVDGGYHR  SL+CP KE A+  +  WSK  ES+RK++EC+FG LKGRFR+ K  I+F    ++D   +T CI+HNMLH FDGL   E D+DWAG DG  D       T  F +   +     E VD  D    F   R++LV+H
Sbjct:  213 TLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREEEPWASYKFVLFDLEGNTTEHTGGWLIVDGGYHRVPSLICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKIDNAWFTACIIHNMLHQFDGLANLEKDVDWAGKDGEADQ-----TTGAFPVPTAVVDTAGEEVDDGDNTEAFKLFRQQLVNH 420          
BLAST of mRNA_H-paniculata_contig8468.16458.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 2.220e-46
Identity = 91/230 (39.57%), Postives = 139/230 (60.43%), Query Frame = 2
Query:  593 PTLAYEATVDHWGQVLGMTKEIAGAVNDKSIVRFDKTVQAVRDGEPYRSMAYKLCDKDGVEQVEKVVYLIVDGGYHRWRSLVCPAKEAATREELAWSKYLESVRKNVECIFGILKGRFRILKLPIIFRESAQVDTVVWTCCILHNMLHSFDGLKLHEPDMDWAGPDGHIDAWLHDDRTMNFGINGRISSGPPERVDVEDGFFAMRRKLVSHYTNRVENN-EVAWL-RSQP 1276
            PT+ Y+ TV+H G+VL +T+   G+ NDK+I+  D+ V  +R  + Y    + +  KDG  +  K  YLIVD GYH+WR L+ P+K   +  +L +SK LESVRK+VEC FGILK RFRILKL + +++  ++D V +TCCILHNMLH+ DG+   E D++W G      A L +    N   +   +    ++  VE     ++RKL +++  R ++  ++ WL R +P
Sbjct:  229 PTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGS-----AELQNTSGHNLDSSSVGTKDLNDKPQVEAAHAELKRKLTTNFLYRKKHKKDIVWLSRKRP 453          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8468.16458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTC6_9PHAE4.530e-6043.75DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE2.980e-5844.20Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM6_9PHAE6.220e-5840.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE3.760e-5747.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE3.210e-5647.11Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHC3_9PHAE1.150e-5143.11DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5K8I3_9PHAE5.340e-5142.29Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE5.720e-4938.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE2.200e-4844.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE2.220e-4639.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8468contigH-paniculata_contig8468:4573..7883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue7.1e-33
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1478
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8468.16458.1prot_H-paniculata_contig8468.16458.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8468 6442..7693 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931063.5453627-UTR-H-paniculata_contig8468:4572..48681622931063.5453627-UTR-H-paniculata_contig8468:4572..4868Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8468 4573..4868 +
1691481573.1514063-UTR-H-paniculata_contig8468:4572..48681691481573.1514063-UTR-H-paniculata_contig8468:4572..4868Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8468 4573..4868 +
1622931063.5616572-UTR-H-paniculata_contig8468:6094..64411622931063.5616572-UTR-H-paniculata_contig8468:6094..6441Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8468 6095..6441 +
1691481573.1704764-UTR-H-paniculata_contig8468:6094..64411691481573.1704764-UTR-H-paniculata_contig8468:6094..6441Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8468 6095..6441 +
1622931063.615908-UTR-H-paniculata_contig8468:7693..78831622931063.615908-UTR-H-paniculata_contig8468:7693..7883Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8468 7694..7883 +
1691481573.2007668-UTR-H-paniculata_contig8468:7693..78831691481573.2007668-UTR-H-paniculata_contig8468:7693..7883Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8468 7694..7883 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931063.5791655-CDS-H-paniculata_contig8468:6441..66211622931063.5791655-CDS-H-paniculata_contig8468:6441..6621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8468 6442..6621 +
1691481573.180049-CDS-H-paniculata_contig8468:6441..66211691481573.180049-CDS-H-paniculata_contig8468:6441..6621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8468 6442..6621 +
1622931063.5950322-CDS-H-paniculata_contig8468:7228..76931622931063.5950322-CDS-H-paniculata_contig8468:7228..7693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8468 7229..7693 +
1691481573.1898673-CDS-H-paniculata_contig8468:7228..76931691481573.1898673-CDS-H-paniculata_contig8468:7228..7693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8468 7229..7693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8468.16458.1

>prot_H-paniculata_contig8468.16458.1 ID=prot_H-paniculata_contig8468.16458.1|Name=mRNA_H-paniculata_contig8468.16458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=215bp
MTKEIAGAVNDKSIVRFDKTVQAVRDGEPYRSMAYKLCDKDGVEQVEKVV
YLIVDGGYHRWRSLVCPAKEAATREELAWSKYLESVRKNVECIFGILKGR
FRILKLPIIFRESAQVDTVVWTCCILHNMLHSFDGLKLHEPDMDWAGPDG
HIDAWLHDDRTMNFGINGRISSGPPERVDVEDGFFAMRRKLVSHYTNRVE
NNEVAWLRSQPGQK*
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mRNA from alignment at H-paniculata_contig8468:4573..7883+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8468.16458.1 ID=mRNA_H-paniculata_contig8468.16458.1|Name=mRNA_H-paniculata_contig8468.16458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3311bp|location=Sequence derived from alignment at H-paniculata_contig8468:4573..7883+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAATCTCCGCGCGATGATGGTGATGCTGAAGATGAAGAAGATGGGCCACA CCCAAAGAAGTAGAGACGGGTGTATGCTCAGCCGCTGTACAGTGAATCGG GGTGGGGAAGGATGCTGCAGTCCCCCGATCTCACCTACCCATTTCGAGAG ACTCCGGCCGCTTCAGAAGGCGCTTTCGTATACCCTGTCCTTTCTTCGTG GAGCTGATGAAGATGTTGCAAGAAGGGCAATGGTTTCCGAAGAGAGAGGG GCGCGTGGATATCACCGGTCGCCGAATGGTTCCTGTAGAGCTGAAGGTGA GTAGCACGACAAGAGGCAATGTTGCAACCAGCGTTTCACGCTTGTCGTGC TTAATCATGCGCCTGAATAAGTCATCCTTTGTGTTCTACGTGGCAGTCAA TTTCCTTCAGTTTGCTGTTGTATTGATATGCTGTCTTACTCTTGATTTCT TCACCATACAGTGCTGCCTCAGTTGTGCTTGACTGTACAGACAGTAAGAT CTGTATCTGTCACTATGCATGACAAAAGTCGCCATCCAATTTGCAGTCCA TTAAGACTGATAATGCGAAGCTAACTAGTAATGTACATAACTGTAGTGTC TAGCCTCATTCCTGTGCAGTACAACCCATACTGTCCTCGAACATACCGTG GTACAGGAAGTATGGCCCTGCGAAGCTGTAGTACATTGAATAATATGACG TGCTGAGTAATAAAAATAGTGTTGTTTTCAACGAGAATTTTCTCATCCAA GGCTGCCGAATCAGCCAGGGTGCGGGGGATACAAATTGACGCATTTCACC GTCTCGACAACATGCCGTTGGAAAATTCCAAACTGGGCAACCTTCACTTA TCCCGAAAGTTTAACGTTACCCATTAAAAAAATGTGGTATTTATTAGTGC CCATTGTAAATACTGTATTGTCTCTTCTTTCCTGTCGGCAAGGTGTGCTG CGTATACCTGTCGAGAATCGTTGTTTCGTCATTTGTTTAGCTGGGCAAAG AATATCCAGACCACCCAATGGACGCGGTGAGCCGGTACCTTAAGCATGAC GAGCGATGCAATACAGGATCTCCCTAATCGTTTGTTCGATTTTGCTATGG ATGCGTTTGATGCTTTTGTTTGATTATTGGTAAGTTCGATGGGTTACTCT GTTCAATTTTCCTCCTGTTGTTGTCCTTCTCTCTCACGAGGTCACACTGT CAGAGAGGGAAGTACGAATTGTGCACACTGGTCACACACCGCGGAAGAAT ATGTCAGGATGACACCTGTGGTGGATTCTCTTCCGTAGGGGTATCTTAGG CCCATTAGAACAGTGCCACCTTGCGTTGCTGGGAGCGATTGACAGTCGAT AAGCCGAGGTGTGTCGTTGCAAATGTTCGTTTTAAACGAGGCCATCGCAC TGGGAACATGAGCGTCATCAATCAATTTTCTCCTTGATAATATTTCGCCA TTCCAGCCGCCGTCAGTACGGCCAAGTATTTCATGCGATTCCGTTACTCT TTCCATCGCGGCTGTGTCACAGGTTCTGGCGAGCTTGCAGATTCTGGGGA GAGGCAATAGTTTCGATGATATTGGCCAGCTCTCCTTGATGAGCGAGTCG ACTGCCCAAAGTGCGTTCCACACATTTTGCAAGCGTTTCGCTAAAGGTCT TTTTCATGAGTGGATTAACCTCCCTACCGGGGATGCCCTCGCAGCCACGA TGAAGGCGTACGATGCGGTGCGCTTCACCGGGGCAGTAGGCTCGACTGAT GTCACCCACATCGCATAGAGTTGCACCCCGGCATCACATACCCATCTCTA CACCGGCAAGTAAGGATTCCGACTCTCGCATACGAGGCAACGGTAGACCA CTGGGGGCAGGTATTGGGAATGACGAAGGAAATAGCCGGAGCAGTGAACG ATAAATCCATCGTTCGTTTCGACAAGACAGTTCAAGCGGTCAGGGACGGT GAACCGTACAGATCGATGGCTTACAAGCTCTGCGACAAGGACGGCGTGGA ACAGGTGGAGAAGGTTGTTTACCTCATCGTCGACGGAGGATATCACCGGG TGAGTCACCTGCTGTTGTTTGATGGTCATTGCTGCTGCACCACCCTACGG AAATGCGTTGTATAGTTGTACGTTATGCGGCGATAATTTCTTCGTTTCTG ACAAGCATACCTCGTTTAGTGTTGTGTATCAACACTAAACGAGCTACGAT GTACGACTTTGTTGATCCCAACGTCAACGGCTGTCCGAGGTCCTACTCTG TGAGCCGTATCTCTATACTCACCGGACATTTGATTGAAGTATTACCACCA GACGAGGTGCAAACTATGAGATAGCAAGCTTCCTTGACATAGGTGGCAGC TACGCGAAATCCGTAGGTCGTACCACGTGGCGTATCTTGTTTACAGTGCA AGCCATGCCACCTTTGACAAGGACTTTGCTAGGATGATGTGGCGCTTCTA TCTCTTTTTTTATGGTCAGTTTCAACCGTCGGTGTTGTTGATGTCGTCTT CAGCTTCAATTTACTCTGTACCGCTGAGTGATCACTGATCAAGGCTGAGA TGAATCGTACGAGCCGGGCGTTTCAATATCTGACGCCGTTGGCCAGACGT TGCATAAGAACAACGTGTATCGACCACTATTTTCTCGTTTCCCCTCTTGT TTGCAGTGGAGGAGTCTAGTGTGCCCGGCAAAAGAAGCTGCAACTCGAGA GGAATTAGCGTGGAGTAAATATCTCGAGAGCGTTCGAAAGAACGTGGAAT GCATCTTCGGCATTCTCAAGGGCCGCTTCAGAATTTTGAAGCTGCCCATT ATTTTCAGGGAGTCCGCTCAGGTAGACACCGTGGTTTGGACATGCTGTAT CCTTCACAACATGCTGCATTCGTTCGACGGACTGAAGTTGCACGAGCCGG ATATGGACTGGGCCGGGCCGGATGGCCACATTGATGCGTGGCTTCACGAT GATCGCACAATGAACTTTGGCATAAACGGTCGCATTTCGAGCGGGCCGCC AGAGCGTGTCGACGTCGAGGATGGGTTTTTCGCCATGAGAAGGAAGCTAG TCTCGCACTACACAAACAGGGTGGAAAACAACGAAGTGGCTTGGCTGCGG TCGCAACCTGGTCAGAAATGATATGAGAGTGTAGATTGGGCATAGTGCTG TATGGATTTTCATATGTCGCGACGATTTATGTTGTGAGGTTTGAGGGCTT GATTGGCAGCATGAGCTGTAGCAAGCGACGTAATTATCGGCCGTCATGGA TAAATGGCATATAGGCACGGAATGGCCGCCACAGCATTTTACTAGGCATG ATATCGCCCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig8468:4573..7883+

>mRNA_H-paniculata_contig8468.16458.1 ID=mRNA_H-paniculata_contig8468.16458.1|Name=mRNA_H-paniculata_contig8468.16458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at H-paniculata_contig8468:4573..7883+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAAGGAAATAGCCGGAGCAGTGAACGATAAATCCATCGTTCGTTT
CGACAAGACAGTTCAAGCGGTCAGGGACGGTGAACCGTACAGATCGATGG
CTTACAAGCTCTGCGACAAGGACGGCGTGGAACAGGTGGAGAAGGTTGTT
TACCTCATCGTCGACGGAGGATATCACCGGATGACGAAGGAAATAGCCGG
AGCAGTGAACGATAAATCCATCGTTCGTTTCGACAAGACAGTTCAAGCGG
TCAGGGACGGTGAACCGTACAGATCGATGGCTTACAAGCTCTGCGACAAG
GACGGCGTGGAACAGGTGGAGAAGGTTGTTTACCTCATCGTCGACGGAGG
ATATCACCGGTGGAGGAGTCTAGTGTGCCCGGCAAAAGAAGCTGCAACTC
GAGAGGAATTAGCGTGGAGTAAATATCTCGAGAGCGTTCGAAAGAACGTG
GAATGCATCTTCGGCATTCTCAAGGGCCGCTTCAGAATTTTGAAGCTGCC
CATTATTTTCAGGGAGTCCGCTCAGGTAGACACCGTGGTTTGGACATGCT
GTATCCTTCACAACATGCTGCATTCGTTCGACGGACTGAAGTTGCACGAG
CCGGATATGGACTGGGCCGGGCCGGATGGCCACATTGATGCGTGGCTTCA
CGATGATCGCACAATGAACTTTGGCATAAACGGTCGCATTTCGAGCGGGC
CGCCAGAGCGTGTCGACGTCGAGGATGGGTTTTTCGCCATGAGAAGGAAG
CTAGTCTCGCACTACACAAACAGGGTGGAAAACAACGAAGTGGCTTGGCT
GCGGTCGCAACCTGGTCAGAAATGATGGAGGAGTCTAGTGTGCCCGGCAA
AAGAAGCTGCAACTCGAGAGGAATTAGCGTGGAGTAAATATCTCGAGAGC
GTTCGAAAGAACGTGGAATGCATCTTCGGCATTCTCAAGGGCCGCTTCAG
AATTTTGAAGCTGCCCATTATTTTCAGGGAGTCCGCTCAGGTAGACACCG
TGGTTTGGACATGCTGTATCCTTCACAACATGCTGCATTCGTTCGACGGA
CTGAAGTTGCACGAGCCGGATATGGACTGGGCCGGGCCGGATGGCCACAT
TGATGCGTGGCTTCACGATGATCGCACAATGAACTTTGGCATAAACGGTC
GCATTTCGAGCGGGCCGCCAGAGCGTGTCGACGTCGAGGATGGGTTTTTC
GCCATGAGAAGGAAGCTAGTCTCGCACTACACAAACAGGGTGGAAAACAA
CGAAGTGGCTTGGCTGCGGTCGCAACCTGGTCAGAAATGA
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