mRNA_H-paniculata_contig846.16453.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig846.16453.1 vs. uniprot
Match: A0A836C7M7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7M7_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 2.770e-11 Identity = 46/111 (41.44%), Postives = 63/111 (56.76%), Query Frame = 1
Query: 1576 SKEALLHDVCEKWCTRSWR-PGLFLKVL---------------AFDGRSPGQGDAGEVRSPGSGAA-FALLKVVWETPTLAVLHVACFGLNSSRRADMMAELRREIWSAGG 1857
+K+ LL C +WCTR+ GL+LK+L A DG A R PGSG FALLKV+WE P LAV+H+ACFG+ + R ++++L +EIW+ GG
Sbjct: 884 TKDQLLAAACRRWCTRALGLRGLYLKLLPPPPQHAHPRSSSTAAEDGAEVA---AARTRRPGSGCGCFALLKVLWEAPNLAVVHLACFGIPAQDRLSLLSDLAQEIWAGGG 991
BLAST of mRNA_H-paniculata_contig846.16453.1 vs. uniprot
Match: A0A6H5KTQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ7_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 6.700e-9 Identity = 60/198 (30.30%), Postives = 83/198 (41.92%), Query Frame = 1
Query: 313 GVVVVARFALAWRKNVRLDYCVTFKLQALSGPGEQSLASPGTADVTLEVLASIPFLLACRNPRAQYER-----------------------------------SSASSLLEFI--------DLLKKMDTMLEHLWATTPV--------------RFGGRELDERSAYRYRRLGSLSVDVWQRFFNTEYVEVIFRGILA 735
G+ V ARF+LAWR +VR+DYC+ FK + Q+LA PG A V +EV A FL+ R + + A L +F+ ++L K++ + L A+T + F LDER Y LG +SV W RF N EYVEV+F G+LA
Sbjct: 1061 GMEVRARFSLAWRTDVRVDYCLEFKSE------HQALAMPGRATVFIEVHAPAHFLVDLRETTEEAKTRKRNQXXXXXXXXXXXXXXXXXXXXAVQQGAGGDGGGAVRLKDFLKTLEQVGDEMLIKIERTTQSLVASTALPLPSSSAAAAPGASNFPSARLDERLCRPYLWLGRISVPEWLRFLNIEYVEVMFSGLLA 1252 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig846.16453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig846.16453.1 >prot_H-paniculata_contig846.16453.1 ID=prot_H-paniculata_contig846.16453.1|Name=mRNA_H-paniculata_contig846.16453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=925bp PAGSSRGGPSPSGSAGYGYGESPGLSSGEISGGTAEGYGAGSSPEGETASback to top mRNA from alignment at H-paniculata_contig846:148..10770- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig846.16453.1 ID=mRNA_H-paniculata_contig846.16453.1|Name=mRNA_H-paniculata_contig846.16453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10623bp|location=Sequence derived from alignment at H-paniculata_contig846:148..10770- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig846:148..10770- >mRNA_H-paniculata_contig846.16453.1 ID=mRNA_H-paniculata_contig846.16453.1|Name=mRNA_H-paniculata_contig846.16453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5550bp|location=Sequence derived from alignment at H-paniculata_contig846:148..10770- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |