|
|
Homology
BLAST of mRNA_H-paniculata_contig8459.16452.1 vs. uniprot
Match: A0A6H5KLJ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLJ1_9PHAE) HSP 1 Score: 105 bits (262), Expect = 5.490e-21 Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = 3
Query: 3 RGKRVGASFGSVAGGGLHETEDETKLRGNHLLESMMMSPRVQMFD-ETGELVGIDPAQVCDLVMEARLGVAQRIRAALESVPADHAAVRRRYLQTKWANSPNDVDFDVREDGGDETQ 350
RGKRV A+FG+ AG G+ T+++ K RGN +LE M+M +VQ FD + +LVG+DPA++ LVM+AR+ VA+RI ALE+VPADH V RRYL+ KW +V +D DE +
Sbjct: 375 RGKRVKAAFGA-AGVGMGGTDEDRKTRGNRMLEEMLMGQKVQTFDFKKNDLVGVDPAEIGQLVMDARIEVARRISTALETVPADHGLVLRRYLEDKWEADRAAGLVNVEDDDADEPE 490
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1271 |
| Cds size | 258 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8459.16452.1 >prot_H-paniculata_contig8459.16452.1 ID=prot_H-paniculata_contig8459.16452.1|Name=mRNA_H-paniculata_contig8459.16452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MMMSPRVQMFDETGELVGIDPAQVCDLVMEARLGVAQRIRAALESVPADH AAVRRRYLQTKWANSPNDVDFDVREDGGDETQSGE* back to topmRNA from alignment at H-paniculata_contig8459:1454..9130- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8459.16452.1 ID=mRNA_H-paniculata_contig8459.16452.1|Name=mRNA_H-paniculata_contig8459.16452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7677bp|location=Sequence derived from alignment at H-paniculata_contig8459:1454..9130- (Halopteris paniculata Hal_grac_a_UBK monoicous) CGAGAGGGAAGCGGGTCGGGGCTTCGTTTGGGTCGGTGGCCGGGGGCGGG
CTGCATGAGACGGAAGACGAGACAAAGCTGAGGTATGGTGTGGTATGGTG
TGGTATGGTGTGGTGTGGTGTGGTCTGGTGTGGTATATGTTTAGGTATAT
TTTCCAAATACCAGTGATTCTGTCCATGCTTGTTTGCTTGTTTGAGGGGG
CAGCCCTGTTTGTACGAGGGGTTTCTTTGTAACAAAAACGCTCGATATTT
CTTATAGAGTATAGAAAAAAAGGTGAAGTTTTACGTACAGGCTAACCTTA
AGGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTG
GTGGTGGTAGTAGTAGTGGTGTTGACCGTTTCGGAACATAAGTTCAACCC
GGTGACCAAGTAAATTCGAAAGCAAAATTGGTTTTCATAGATATTTGTGT
CTACTCATTGTATAAGTGGGCACAGCAGAGTGCAGCGCAGCGCGCCATAG
TTTGGGGGAAAATGGGACGAGAGAGGACAAAACACTGATTGCAAAGGGGC
GGCGCATTGTTGCGGTTGTGCACGGGTGTGGTAGATCAGATCAGATCAGA
ACTGCCAGTTGACCGTTCACGTAGGAGTCGAACGAGTGTTATCGCAGTGT
CTATCTGTTCTACAGTACTTGGCCTTTTGCGCCTCTTTACACATTAAACA
TTGCTGACGCTTACCCCCTCATCTGTTTGATGTGCCATTTTTCAGGTTAA
TGTTGTAAATGGCTGATTTGGAAGTGGCCCCCCACGACTGACTGACTGTC
GGGTAAAACAATCGTGTGTATGTTGGGTACTTGGAATTCAGAATATATTT
TTTGAAGATATCTAGGAGACCAGGGAATAACCTGCTATGATAGTTGTTAC
ACGAGATGGTGATGTCGCAGCTTCCTTACGTACCCGTAACACCTTGATTT
TCAGTACTTTTCAACAAACTTTACTTCCACTTTTTATTTTTTATTTTTTT
ATGCTTCCTTTCTCGTGTCGGTCATGCGTCATAGATGTGCATCATATCCT
AACCACGCCCGAGGAGGCGGATATTGTTGTCAACTCAGGAGTTGTATGGT
ATTCTATGGCATTTTGCCTCGAAAGTGCGATCTTTGTAAGTCGTTGGAAC
GGGCTCTCGGAATAAACGAGTCGCCTCCTTGTGGAAGTCCCCGTACATAC
AGTGTACTACTACACGTACTTGGGTTTTATGGCTGCAGTTTTGTATCTTG
CGCTTGGGCAAGGCTTGGGCACCGAAATGCTGTGCCAAATATGAGATAAC
GTACCGCATGATATTGAGAAGACAAACAGCCATACCTTACCGTACCGTAC
CTTACCGTACCGCGGGGAAGAAACTGAACACCGCTTTTCGCGCCAATACC
GAGAAATATATATATATATATATATATGTATACCGTACCGTGTTACCAAT
TATGCCGAATACCATTTATCCACATGATACCGAGAAAATCATTGACCGTT
TGATCATTTTTTAAATACCGTTACCAAGAACACCCCTGATGAAAGCGATA
TAAATATATACTCCCCCCGGATGTTGTGGTCATTATCCATTAAATGTACA
TATGCTGTAGTCATAATCCAACAACTGAGCATTACGTAATCTTCCGAAGA
GAGAAAGCCAAAACATGTCATTTTTTGGGCTCCTACGGCGAGGCTCCCGT
ACCAGCCTGGGGGGGGGGGCATGGGGCTCGTGGCAAGCCGCTCGCCTGGG
GTTTCTTGCTGCCGGCTTGCTCTGCTGGCACCAATACAGGATAATAGATA
TCGGCACCGATAGGTCGATAGTGCATTGAGTATATTGGCTTCACCAATCG
GCCAACATATTTACATATATTTGAATGATCGATACACAACCCTACCCTTT
GGGGTATTTTGAGGCCAGCGCACACCTTTAGTTGCAACGTAATAGTTTCT
ACGGAGATGCGTTGTAGCAAGTATGCCTGGACATGTTGACAATAAGACCA
GCAAATTTACTACTAGCAATATGACTGTTTCGATTTAATCAAACGTTAAA
ACATGAACAGTGTTGCAATAAATAAGTCATGTTTTAGTTTAAATACTATG
CAGTCGCACGTAAAAAATGAATCTTTATTGCTTTGATACGGTACGGCCGT
CATCGTTTTCCGTCATTTTCGGAACAGTTTTTTTCAATACTATAACAAGT
AGTTTTTGAAGAACGGATCTTCGCGGGCTAGCCGTAGCGTAGCGAGCCGC
TCACTGAGAGCGCAGCGAGATGTTGTGTGCGTGGGTCGAGGGCAATCGAC
TGCAGTGTATGACTTCACGGGCGTAGTAGCTATAGCGTTTTCTGACATGC
ACACTGTTGTACTGTTACCATGTACATGGTATACCCTTTTTCCAGTCTAT
ATCTCCCTTACTCTGTAGTGAGCCGTTGTCTGTGGTTCCCTATACTCTTG
CGGGACGTGGGGGGGGGTAGGGAGCGGGGGGGTACTCATGTTTGGCATGT
CGTAGATGTTCAGATCATTGGCCACGCGTCCTCGGGAGGACGGAGATTCG
TTCCTATTAGAGCGATTTCGTTCTGCATGTCGAAGTTCTATGATAGGAAC
AAAGCTCTGTCCTCCCGAGGATGCGTGGTCAAATGATGTAAACAAGTACA
AAATGCACAAAATGAGGTATGGATTAAAAAAAAAAAAGAAGGGATTTTTT
TTTTTCGAGTTTATATACACATACACACATACACACACACACATACACAC
ACACACATACACACACACACACACACATACACACACACACACACACACAC
GAATGTTCGTATTGAACTTACAAGCAGCCTCAAAATCGCGCGATGGTTCG
TTAAGCTTCTAGAAATCGAGATTATAAAAAAAACAAATGAAAAGAGGACA
AAAAGGAAAAAATGGTGACAAGTGTTATTTCGCTCCTCACCCCATAATAC
ATCGGAATTAATACAACAGCGCGAGATGCTGTTTTTTTTGTATTATCAAT
GTGCCATTTAACTTTTTAACGTTTTTTTTAAAATGAAAGAACTCGAAAAA
ACGACGGAGGAAACGCTTAGAGAAAGAATCTGTTGTTACCGTGTATATAC
AGTATACCTGTTTCTGAATAGTCTAATCCCTTTCTACCGAGTATTGAGCC
GTTTTGCAGGGCTTCCTGGCAAGTATATTAAACTTAGAGCACAACACCAT
TCATTCAGTCAACGTCCAGTAGGATCAGAATTTCAAGATGACCTGCAAGG
ATCATCTAACTTTTTTTTTTTTTCCAGTTTTCGGGGGCTCACCTAAAGTT
TTCACTCATCACCAGGTGGACGTACTCGGCGTGTTTATTGTTTCGCGGAT
TGATATTTTGATTGATTGGTAGCGGGTACTCACATACATTTGGGTGTATG
AGAGAAGAAAAGAAAAAAATTTAGTCGGTTAAGAGCGTCCGACTTGCAAA
TTCACCTTCAAGTCTTGTCTGTAGTAAGCACGTCGTGCGAGACCAGGATA
CTGTCTGTGCGCACGTAGCCTTAGCTGTGCAAGCATGTTTGGACGTGAAT
TCCTCGAGTTAAATAGAGGGAATCAGAACTGGTACGCTGCTAGTCGCGCA
TGGACAGATTCATCGCTGCCGGGTCCTTTTCCTCCTCGGCATCACGGACA
CATGTCACTGTAGTAAGAACGTATAAGCGGAAGGGTGTTCCTTTTTAAAT
CTCTTTTATGACAGATGCAGCACTGCAATCGCTCACAAACAAGTTGGAAC
TTTTGGCCTTACCCCCGTTGAATTTGTGCTCTCATGGCCGCACAGAAGCG
CTACTACCGCGTTACAAAAACGCGCGTTAGTACTCAACTAATGCCCCCCC
CCCCCCCCTCCCCTCCTCCTCGCCCCGTTCAAAACATTCCCGACCCCGAC
CGCACCCCAGACCTCGCGACGCTTAATCTCCGGAGATACTCGTCTTTCGA
TTTGTCTGACTTGCCCGCGCAGTGAATTCGCAAAAAAGTAGCTCCGCGCG
TCTCAAAACTCAAAAATGTGATCTACCGAGCGTGCTACCCCCCCGGCCCT
ACCCCCCGTCCTCCCGCTCCGTCCTCGCGAGCTAGCATGTTTAATGGTCA
ATGGTCTCACAAACAAGTACGGCATGCAAAACATGCATGCACCCCCCCCC
CCCTCCCTCCTGCGCCGGGCGTGTGCGTGCCTATGTTGGGTCGTGGGCTG
TCTTTTCCAGGGGTAACCACCTGCTGGAGTCGATGATGATGAGCCCTCGG
GTTCAGATGTTCGACGAAACGGGCGAGCTTGTCGGCATTGACCCCGCACA
GGTATGTAGTATGCAGTATGTCTATGTAGGATTTTTTGTATGAGAGTCTT
GTGATTTTTCAACAAAAAACTTGGAAAAAGGTTTTCTCTCGCTATGAACT
TGGAAGAAGGTATTTTCTTGAAGAAGGTATAAGCTCGCTCGCGGATGAAT
GAGCAAGCGTATATCGAGTTTTTTTGTTTTGTTTTTTTCAGTTTTTTTAC
TTGAAGCGCACAGGGACGAGAAAAAAATACTTGGTCGAATGAAACCTGGA
ACTGGTCTGTATTCGTACACTAACCCTCCCCCCCCAAAAAAAACAAACAA
ACCAGTATGTACTTCATGAAGAGTTGATGGTTTCTCGGCTATTTCCCGTG
TGTCGATAAAATGCGATGAAAACTTATGAGAGAGACAGGAAAAAAAAAAA
GAAAAAAACATATCGACTGTGAACTTCAAGACTGATACTGTCTGGTACCG
TCCTTTATTTGTTTACGTCATTTTTTCCATGCACGATCCCGGGCGACTAT
GCAGGGCAAAGCTGAGGTGGTAGCTGTTAAAGCAAGTGTTGTTTCCAGCA
GCACCACACAAACATGTATTGTCCAAAGACTACTATTTATTTCTGCGCCC
GAAGCTGGCAACCTCGTATCAACAGGCTTTTGTAGCAGCAGCACCGGCGA
GGTGTTCTCATTGCTCAACGTGTTTTTTTTTTTTACATTTTTGGGTGCGT
ACGCACCTTTACGGCGCCAGGGGTCGATTTATTAGTACCGCTGGTAGCGA
TCAGCGTTATTACAAGTTGGAAGAGGCACATTACCGTACGGCATATTTCT
ACTCGCGACCGACGGGTCTGTGCAGTGATCGGATGGATAATATGAAGAAG
TCACCAACACAAAAAAACAGAGATTGGAGGTCGCTAGATTTTAGCGGCAC
CAAGTATCTCAGCGTTGCTCCTACAGCTGCTGCTGCACTTGCTGTGGCGG
CGGTGCTGGTGCTGGTGCTGGTGTTTCATGTCTGTGGTGGCGATGCCGGT
GGTGATGGTACAGCACCTGTGAACAACCGACTTTTTTGCAACCAACAGAT
CACTTTACACATTGCAAGCTGTAGGAGCCAATCCTCCAGAAGCCATTGCC
GATGCTGGCGTGTGGCGCTTATCACAAGATTAATAATGCTTCAACAACCT
CTTTTTTCTCATGAAGGATAATGACCAAATAATGTTTAGAGGCGAAAAAA
TGCAGTTAATCTTTTCTTGTCGGCAGCTGTGGCAGTACGAAAGGGTGTGT
ACAAAGCCCAAGCCTTGGTCAGAAGAACTAGGCGGAAAGGCGCTTTATAG
AGGGTAATCATTTTTAATCTTTTCGTTATTGAACTGTGGTGGCTCACCCC
TCTGACCGCGAGAGTTAAAGCTAAATTAGTTTGGTGGCTCTATCCATGCC
CATTAGGCTTTTGACGGCGACGTCCGTGCACCTCGTGTTTTAGTCCCCGG
ACCTTTGCTTTCAAAGCCACGGCCCCAGGCATGACCGCTCGCTGCACTCG
CGTGTAGGCACGATGTCCAAGGAGATTTGTTATCTAGAAATCACTTGAGT
TAAAACTGGGAAAAATTAATTCCGAATCAGCCATCAACATCATATTATGC
GCAATTTTCCCAGCAGCGAAGTTCCGAAAGTGAGTTTGCGGTCGGAGAGA
GAGGTTCAATGGAAGGAAGCACGACGGAACCCAACGCCTCGATAGATTTT
CTGAGATCGACAGATATACATCATATATATATATATATATATATTAAATA
GAATATAAGAAGCAACCGCAAAAGTTGAGTGATGTCTAGCTTGTGCGGCG
TTGCAGGCCAACTTTGCAGTGATATTTTTTAGCTTTTACTCCTTCGGGAA
GCGGTGCTTTTTGAGCCTCGTTAAACAGTTAGGTCCGATTCATTCATGTT
GCAAATCAGCCGATTTTCGAGCGTTCCAAAAGGGATGCCTCTACCTACAA
TAGATATGAGTGCCCAAAAGCAGATCTGTGATGGGCTGCGTCCCGAGATC
TGATATTAACGTATTTTCCATTAGTATATGAAGAACGAACCTCTCGAAAA
TAGATATCAGGAAACAGATGTCGGAGGGTCCGGCGTCCCGAAAGGATTTA
AGTCATTCAAACCTTCGATACCTGACTCGGCGCTTTACTTGTTCTGGTTT
CAGCCATGTTGCCTTGTAAGGCGTAGAGTTGCAGCTTGTTTTGGGACCTG
TTCGTTCCTTGTTGAGTTAACAGTTCATATTCTGATAATTTTGTTGTATG
TGTAAATATGTATATCTTGTCGTCTCAAGGTGTGCGATTTGGTGATGGAG
GCACGATTGGGCGTCGCACAGAGAATCCGAGCGGCTTTAGAGAGCGTACC
CGCGGATCACGCGGCCGTTCGGAGGCGTTATCTACAAACGAAATGGGCGA
ACAGCCCTAATGACGTCGACTTTGACGTACGTGAAGACGGCGGAGACGAG
ACTCAGAGTGGAGAATGACGTTTAGGCAGGGAAACAGATGTGCGGTCAGT
TTGACAAGTTGTGTAATTAGTGTGCGATGCCCTCGCTGGAGTGTGCCGTG
ACTTGCAGGTTGGATACTGTAGGGGTGTAAGATATGTTATTTAGACCCGC
TCAAACATCTATATATATATATATATATATATAAATATAAATATATGTTT
AGGCCTTTTTGTGGTGGTTTCTTGGAGGGCGTTCGGATTGGATGTAGCCT
CGTTTTTTTTCTGTCGTGGCTGACTTTTTCTTCGTACGTAAAAGCCAGAA
ACGTTTGAAGGATTCTGTCATACGCCTAGCCGGGTGGTTAGAGTCACAAG
CTCTTTTCAGGGCGGCGCACAGGGGTCCGTCATGGTATCATCACCTGCTT
GTTGCACGGGAGAAGCACAAAATAATCCGGGAGCGAGAAAGAAGATGGAA
TTTTTCGCGGACGTACGTGAGCTTTATAACTTTTTGGCGTAACTATTCCT
GGTCAAAACCACCTGAAGCTGCCCGGTAGTCAGTCAGTAGTCCATAAAAG
CAATGACTATAGTAGTAGCTATTAGCTGCCAAGAAGAGACAAAAGCTTGC
CTATTATATATATATATATATATATATTTCTTTTTCTGCAACGCATGAAT
CAATTCAGGCGCTCAGACCCGCCCAAATCTACTCGAGCAACGCCGAATAC
GATCAGTAGTAATCGGTGTTCACTTCGATGAACAAGTCTCGCGCTAGCGA
CACAACCTTCCTGCGACTAAGGGTATCGACTGGCGTTCCCAAAAACGCGT
GCAACAAGTTCCTGGGGTAGCTGTTATTGTTGTGTTCCCCTCGTAACATT
ATACTTCGACACAGGAGGAGGGGATGTTCATGACGTCACAGCGTTGCGTT
CCTGGAAAATACGCAATTTAGTTGGCA back to topCoding sequence (CDS) from alignment at H-paniculata_contig8459:1454..9130- >mRNA_H-paniculata_contig8459.16452.1 ID=mRNA_H-paniculata_contig8459.16452.1|Name=mRNA_H-paniculata_contig8459.16452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig8459:1454..9130- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGATGATGAGCCCTCGGGTTCAGATGTTCGACGAAACGGGCGAGCTTGT CGGCATTGACCCCGCACAGATGATGATGAGCCCTCGGGTTCAGATGTTCG ACGAAACGGGCGAGCTTGTCGGCATTGACCCCGCACAGGTGTGCGATTTG GTGATGGAGGCACGATTGGGCGTCGCACAGAGAATCCGAGCGGCTTTAGA GAGCGTACCCGCGGATCACGCGGCCGTTCGGAGGCGTTATCTACAAACGA AATGGGCGAACAGCCCTAATGACGTCGACTTTGACGTACGTGAAGACGGC GGAGACGAGACTCAGAGTGGAGAATGAGTGTGCGATTTGGTGATGGAGGC ACGATTGGGCGTCGCACAGAGAATCCGAGCGGCTTTAGAGAGCGTACCCG CGGATCACGCGGCCGTTCGGAGGCGTTATCTACAAACGAAATGGGCGAAC AGCCCTAATGACGTCGACTTTGACGTACGTGAAGACGGCGGAGACGAGAC TCAGAGTGGAGAATGA back to top
|