mRNA_H-paniculata_contig8429.16429.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8429.16429.1
Unique NamemRNA_H-paniculata_contig8429.16429.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8429.16429.1 vs. uniprot
Match: A0A6H5JQ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ31_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 7.340e-39
Identity = 68/116 (58.62%), Postives = 92/116 (79.31%), Query Frame = 1
Query:    4 IAFFRSQAS-TDSQQNNASPLRNPINYATAYLDLDFLYGRTEEQALSLRTLDGGQMNITERGYPHRNSDGTWKMADQRPGKYPVTFALHAVLLLEHNRCCVDVAPGLGFSGDEVCY 348
            I+FFRS+A+ TDS       +RNPINYA++++DLDFLYGR+E+ A +LRT +GG +++ +   P +N+DGTW +ADQR  ++P+TFALH VLLLEHNRCCVDVAPGL ++GDE  Y
Sbjct:   66 ISFFRSEATVTDS-------VRNPINYASSFIDLDFLYGRSEDAADALRTFEGGMLSMADDNMPIKNNDGTWLIADQRTARFPLTFALHIVLLLEHNRCCVDVAPGLNYTGDEDIY 174          
BLAST of mRNA_H-paniculata_contig8429.16429.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.210e-37
Identity = 68/117 (58.12%), Postives = 87/117 (74.36%), Query Frame = 1
Query:    4 IAFFRSQAS-TDSQQNNASPLRNPINYATAYLDLDFLYGRTEEQALSLRTLDG-GQMNITERGYPHRNSDGTWKMADQRPGKYPVTFALHAVLLLEHNRCCVDVAPGLGFSGDEVCY 348
            I+FFRS A  +D    N+   R+P+NYATA++DLDF+YGR+EE A +LR+ DG G M +TE+G P+ N DGTW +ADQR  ++PVTFALH VLL EHNRCCV++APG G   DE  Y
Sbjct:  155 ISFFRSDAGLSDDDGANSVETRSPVNYATAFMDLDFVYGRSEEDAATLRSSDGNGFMAVTEKGLPYLNDDGTWLIADQRTARFPVTFALHVVLLREHNRCCVEIAPGEGAETDEDIY 271          
BLAST of mRNA_H-paniculata_contig8429.16429.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.650e-37
Identity = 67/116 (57.76%), Postives = 89/116 (76.72%), Query Frame = 1
Query:    4 IAFFRSQAS-TDSQQNNASPLRNPINYATAYLDLDFLYGRTEEQALSLRTLDGGQMNITERGYPHRNSDGTWKMADQRPGKYPVTFALHAVLLLEHNRCCVDVAPGLGFSGDEVCY 348
            I FFRSQA+ TDS       +RNPINYA++++DLDF+YGR+++ A +LRT DGG +++ +   P +NSDGTW +ADQR  ++P+TFALH VLLLEHNRCCVDVAP L ++ DE  Y
Sbjct:   81 IPFFRSQATVTDS-------VRNPINYASSFIDLDFVYGRSKDAADALRTFDGGMLSMADDNMPIKNSDGTWLIADQRTARFPLTFALHVVLLLEHNRCCVDVAPALNYTSDEDMY 189          
BLAST of mRNA_H-paniculata_contig8429.16429.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 2.700e-36
Identity = 65/116 (56.03%), Postives = 88/116 (75.86%), Query Frame = 1
Query:    4 IAFFRSQAS-TDSQQNNASPLRNPINYATAYLDLDFLYGRTEEQALSLRTLDGGQMNITERGYPHRNSDGTWKMADQRPGKYPVTFALHAVLLLEHNRCCVDVAPGLGFSGDEVCY 348
            I FFRS+A+ TDS       +RNPINYA++++DLDF+YGR+E+ A +LRT + G +++ +   P +N DGTW +ADQR  ++P+TFALH VLLLEHNRCCVDVAPG  ++GDE  Y
Sbjct:   81 IPFFRSEATVTDS-------VRNPINYASSFIDLDFVYGRSEDAADALRTFEDGMLSMADDNMPIKNDDGTWLIADQRTARFPLTFALHVVLLLEHNRCCVDVAPGENYTGDEDIY 189          
BLAST of mRNA_H-paniculata_contig8429.16429.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.720e-36
Identity = 67/118 (56.78%), Postives = 88/118 (74.58%), Query Frame = 1
Query:    4 IAFFRSQAS-TDSQQNNASPLRNPINYATAYLDLDFLYGRTEEQALSLRT-LDG-GQMNITERGYPHRNSDGTWKMADQRPGKYPVTFALHAVLLLEHNRCCVDVAPGLGFSGDEVCY 348
            I F+RS A+ +D     +   R+P+NYATA++DLDF+YGR+E+ A +LR+  DG G M +TE G P+ N DGTW +ADQR  ++PVTFALH +LLLEHNRCC+D+APG GF GDE  Y
Sbjct:   67 IPFYRSDAALSDDDGALSEETRSPVNYATAFVDLDFVYGRSEDDAAALRSSADGDGFMALTESGLPYVNDDGTWLIADQRSAQFPVTFALHVMLLLEHNRCCIDIAPGEGFEGDEDIY 184          
BLAST of mRNA_H-paniculata_contig8429.16429.1 vs. uniprot
Match: D7FX03_ECTSI (Peroxinectin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX03_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 9.910e-36
Identity = 66/118 (55.93%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    4 IAFFRSQAS-TDSQQNNASPLRNPINYATAYLDLDFLYGRTEEQALSLRT-LDG-GQMNITERGYPHRNSDGTWKMADQRPGKYPVTFALHAVLLLEHNRCCVDVAPGLGFSGDEVCY 348
            I F+RS A+ +D         R+P+NYATA++DLDF+YGR+E++A +LR+  DG G M +TE G P+ N DGTW +ADQR  ++PVTFALH +LLLEHNRCC+D+AP  GF GDE  Y
Sbjct:  231 IPFYRSDAALSDDDGALGEETRSPVNYATAFVDLDFVYGRSEDEAAALRSSADGDGFMALTENGLPYVNDDGTWLIADQRSAQFPVTFALHVMLLLEHNRCCMDIAPSEGFEGDEDIY 348          
BLAST of mRNA_H-paniculata_contig8429.16429.1 vs. uniprot
Match: D8LB73_ECTSI (Peroxinectin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB73_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 2.970e-30
Identity = 61/113 (53.98%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    4 IAFFRSQASTDSQQNNASPLRNPINYATAYLDLDFLYGRTEEQALSLRTLDGGQMNITERGYPHRNSDGTWKMADQRPGKYPVTFALHAVLLLEHNRCCVDVAPGLGFSGDEV 342
            I F RS+A  D+    A   R+PINYATA++DLD++YGR E  + SLRT DGG MN+T    PH   DGTW +ADQRP + PVTFAL  +LL EHNRCC ++AP    + DE 
Sbjct:  157 IPFSRSEAGEDAGGEEA---RSPINYATAFVDLDWMYGRDEATSASLRTEDGGYMNMTNDELPHLLDDGTWLVADQRPARLPVTFALMTLLLREHNRCCDEMAPEWDPANDEA 266          
BLAST of mRNA_H-paniculata_contig8429.16429.1 vs. uniprot
Match: A0A6H5K9L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L2_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 4.260e-30
Identity = 61/115 (53.04%), Postives = 77/115 (66.96%), Query Frame = 1
Query:    4 IAFFRSQASTDSQQNNASPLRNPINYATAYLDLDFLYGRTEEQALSLRTLDGGQMNITERGYPHRNSDGTWKMADQRPGKYPVTFALHAVLLLEHNRCCVDVAPGLGFSGDEVCY 348
            I F RS+A  D+    A   R+PINYATA++DLD+LYGR E  + SLRT DGG MN+T+   PH   DGTW +ADQRP + PVTFAL  +LL  HNRCC ++AP    + DE  +
Sbjct:  127 IPFSRSEAGEDAGGEEA---RSPINYATAFVDLDWLYGRDEATSASLRTEDGGYMNMTDDELPHLLDDGTWLVADQRPARLPVTFALMTLLLRGHNRCCDEMAPEWDPANDEDAF 238          
BLAST of mRNA_H-paniculata_contig8429.16429.1 vs. uniprot
Match: A0A6H5K036_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K036_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.820e-24
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    4 IAFFRSQAS-TDSQQNNASPLRNPINYATAYLDLDFLYGRTEEQALSLRTLDGGQMNITERGYPHRNSDGTWKMADQRPGKYPVTFALHAVLLLEHNRCCVDVAPGLGFSGDEVCY 348
            I+FFRS A  +D    N++  R+P+NYATA++ LDF+YGR+EE A +LR+ DG               +G   + DQR  ++ VTFALH VLL EHNRCCV++ PG G   DE  Y
Sbjct:  211 ISFFRSDAGLSDDDGTNSAETRSPVNYATAFIGLDFVYGRSEEDAATLRSSDG---------------NGFITIPDQRTARFLVTFALHVVLLREHNRCCVEIEPGEGAKTDEDIY 311          
BLAST of mRNA_H-paniculata_contig8429.16429.1 vs. uniprot
Match: A0A6H5JA13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA13_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.640e-16
Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    1 DIAFFRSQASTDSQQNNASPLRNPINYATAYLDLDFLYGRTEEQALSLRTLDGGQMNITERGYPHRNSDGTW--KMADQRPGKYPVTF------ALHAVLLLEHNRCCV 303
            DI F RS A+          +R+PINYA++Y+DLDF+YGR+ E A  LRT++GG MN+T+ G P +N DGTW   + +++  +   T       ++ + LL+   R C+
Sbjct:   85 DIPFSRSDAA-----EGTDGVRSPINYASSYIDLDFVYGRSAEAAELLRTMEGGFMNVTDSGVPFQNEDGTWLVSVGERQAARQRETLVRLCGPSVLSFLLMRLTRACI 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8429.16429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5JQ31_9PHAE7.340e-3958.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFE6_ECTSI1.210e-3758.12Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J2_ECTSI1.650e-3757.76Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J1_ECTSI2.700e-3656.03Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JBL8_9PHAE2.720e-3656.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX03_ECTSI9.910e-3655.93Peroxinectin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
D8LB73_ECTSI2.970e-3053.98Peroxinectin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5K9L2_9PHAE4.260e-3053.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K036_9PHAE2.820e-2446.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA13_9PHAE5.640e-1638.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8429contigH-paniculata_contig8429:867..2446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue1.9e-32
Seed eggNOG ortholog2880.D8LFE6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peroxidase activity
EggNOG OGsKOG2408@1,KOG2408@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size352
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931058.4004312-CDS-H-paniculata_contig8429:866..10851622931058.4004312-CDS-H-paniculata_contig8429:866..1085Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8429 867..1085 +
1691481570.8450894-CDS-H-paniculata_contig8429:866..10851691481570.8450894-CDS-H-paniculata_contig8429:866..1085Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8429 867..1085 +
1622931058.4252052-CDS-H-paniculata_contig8429:2314..24461622931058.4252052-CDS-H-paniculata_contig8429:2314..2446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8429 2315..2446 +
1691481570.856451-CDS-H-paniculata_contig8429:2314..24461691481570.856451-CDS-H-paniculata_contig8429:2314..2446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8429 2315..2446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8429.16429.1prot_H-paniculata_contig8429.16429.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8429 867..2446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8429.16429.1

>prot_H-paniculata_contig8429.16429.1 ID=prot_H-paniculata_contig8429.16429.1|Name=mRNA_H-paniculata_contig8429.16429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
DIAFFRSQASTDSQQNNASPLRNPINYATAYLDLDFLYGRTEEQALSLRT
LDGGQMNITERGYPHRNSDGTWKMADQRPGKYPVTFALHAVLLLEHNRCC
VDVAPGLGFSGDEVCY*
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mRNA from alignment at H-paniculata_contig8429:867..2446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8429.16429.1 ID=mRNA_H-paniculata_contig8429.16429.1|Name=mRNA_H-paniculata_contig8429.16429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1580bp|location=Sequence derived from alignment at H-paniculata_contig8429:867..2446+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACATTGCCTTTTTTCGGTCCCAGGCGTCGACTGACAGCCAACAAAACAA CGCCTCTCCACTTCGAAACCCGATCAACTACGCTACCGCGTACCTGGACC TTGATTTCTTGTACGGGAGGACAGAGGAGCAGGCCCTCTCTTTGCGAACG CTCGATGGAGGACAGATGAATATTACGGAGCGCGGTTACCCTCACCGTAA TTCCGATGGAACCTGGAAGGTATGTATGGATGCTTAATGAGTGGGGAGGC GGTTTCCAAGTGGAACGTAACATTGTTCGATACGATGCATGATTGCTATC TGCTGAAACAGCAGCAGTTTCACCACGAAAAACAGTCAATTTGAGCTGGG TTCGGAATTGCCGCCAAGAATGCCGTTGGACAGCGGTACAAACTGTATTT CAGTTATAGGTGGCATCATTATGCCGCCTTGCTTCCGTTGCCATTCAGCT CGCGCATCAGGTTTGGGACGACCAATGCGTCGGAGTGCAGTAGAACAGAG CTCAATTGACGGATAGTATCTTCTCATCTCTTGCCTTCCGTTTCCTTTCA TGATCATGCGTTACATGAATAGTGACCAACACGGAACCTCTAGAACGCCA TTGATTGTAGTGCTCTGCAAGCGTTTCTTACCCAGCATGTGTGATCTAGA AACAGGCGGCACAAAAGATGTCGGTTGGAAAGTTGACGGTTCGGACTTAC GATATTTTTGTAAACGTCGAGAAGGTAGTCTGGAAAGGACGGGACACACA GTTTTCGAGAGGACGTTCTAGATGCACATTAGAAAGGTGAATGCAGCAGG CGTGGGAGGACTGAGCGAGCCCACCACTTCCACTTCAATTCACTGATTCT TGATTAATTTGCGAGCAACGACAGCGAAGGATAAATAGTACAAGTTTGTA ATTTACATCTTGTGTGAGATACGTTCTGTGTCGCGAGATACTCCTACACG AGACAGAGAGGAATCCATATCACTTCTGCGATAAGAAGCTGAGGTGCACA GCGCCACAAGTACGCGGAATGAACGCATCCTTTAGGAATTCGAATTGTGT TTCGGGTAATTGGGTCGTCAAGCGTCGATACGTGCACGGGAATTAACATT GAACGGGGACCAACGATGTGCCACTCCTTCATCTACCATCGTTGCGATCG CGTACATGGAGTTAGGATACTCATCATCATGAGCTCCTGCAGGATTAATA CCATAAGGTAATGATCGTTTCGTGAATCTTTTCCGCATGACTCGTCAAAC TTCAGCGTTTTCGCGGTGGTGGCTGGCTCTTTTCAACACTTTTTTGCATG GTTTTTCCAAGGCATTTCGCCAAACAGCCGTAGCCTAGTGTGAAGCCAAC CCTACAAGTTGATATTTGATTTCCTTTTGTGGCGCCACCCGTTCCAATGC CCACACGGCTGGTCGACTCGCTCCTCACTTCCCGTTGCCTGTTCTCAGAT GGCCGATCAGCGACCTGGGAAATACCCAGTGACGTTTGCTCTCCACGCCG TACTACTGTTAGAGCATAACCGATGTTGCGTGGACGTGGCGCCAGGTCTG GGCTTCTCCGGAGATGAGGTGTGTTATTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8429:867..2446+

>mRNA_H-paniculata_contig8429.16429.1 ID=mRNA_H-paniculata_contig8429.16429.1|Name=mRNA_H-paniculata_contig8429.16429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig8429:867..2446+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACATTGCCTTTTTTCGGTCCCAGGCGTCGACTGACAGCCAACAAAACAA
CGCCTCTCCACTTCGAAACCCGATCAACTACGCTACCGCGTACCTGGACC
TTGATTTCTTGTACGGGAGGACAGAGGAGCAGGCCCTCTCTTTGCGAACG
CTCGATGGAGGACAGATGAATATTACGGAGCGCGGTTACCCTCACCGTAA
TTCCGATGGAACCTGGAAGGACATTGCCTTTTTTCGGTCCCAGGCGTCGA
CTGACAGCCAACAAAACAACGCCTCTCCACTTCGAAACCCGATCAACTAC
GCTACCGCGTACCTGGACCTTGATTTCTTGTACGGGAGGACAGAGGAGCA
GGCCCTCTCTTTGCGAACGCTCGATGGAGGACAGATGAATATTACGGAGC
GCGGTTACCCTCACCGTAATTCCGATGGAACCTGGAAGATGGCCGATCAG
CGACCTGGGAAATACCCAGTGACGTTTGCTCTCCACGCCGTACTACTGTT
AGAGCATAACCGATGTTGCGTGGACGTGGCGCCAGGTCTGGGCTTCTCCG
GAGATGAGGTGTGTTATTAGATGGCCGATCAGCGACCTGGGAAATACCCA
GTGACGTTTGCTCTCCACGCCGTACTACTGTTAGAGCATAACCGATGTTG
CGTGGACGTGGCGCCAGGTCTGGGCTTCTCCGGAGATGAGGTGTGTTATT
AG
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