mRNA_H-paniculata_contig8426.16428.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8426.16428.1
Unique NamemRNA_H-paniculata_contig8426.16428.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8426.16428.1 vs. uniprot
Match: D7FK12_ECTSI (Outer dynein arm docking complex protein like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK12_ECTSI)

HSP 1 Score: 379 bits (974), Expect = 7.130e-126
Identity = 211/246 (85.77%), Postives = 224/246 (91.06%), Query Frame = 1 
Query:    1 MTSTMARSGVVGAVQPQGDPQQQVQDLQQLQREYRHMELNRRAYADESQQLLRKQQANMEKLRRENDSLKTELAMEFRQYRKPVDAGSAERTSQLQEQAGHYVTAIENEKRTIDTVAEQMALMKHKILHQRKIMGGVNAAKENEYMVQKQVRILENRLDKALTKFNEALAHNKTLRQEIDDLRRERVLFDVIYKKMERELSDRKKMMANVIELSNVNYEQRDNFQMEIAAVEQANRREQDDFENQV 738
            M S +ARS   G VQP     Q+VQDLQQLQREYRHMELNRRAYA+ESQQLLRKQQANMEKLRREN+SLKTELAMEFRQ+RKPVD+ SA+R +QLQEQA H++  IE EKR IDTVAEQ  +MKHKILHQRK+MGGVNAA ENEYMVQKQVRILENRLDKALTKFNEALAHNKTLRQEIDDLRRERVLFD IYKKMERELSDRKKMMANVIELSNVNYEQRDNFQMEIAAVEQANRREQDDFENQ+
Sbjct:    1 MASALARSA--GGVQPPQGDAQRVQDLQQLQREYRHMELNRRAYAEESQQLLRKQQANMEKLRRENNSLKTELAMEFRQFRKPVDSSSADRIAQLQEQADHFLALIETEKRAIDTVAEQTGMMKHKILHQRKMMGGVNAAMENEYMVQKQVRILENRLDKALTKFNEALAHNKTLRQEIDDLRRERVLFDTIYKKMERELSDRKKMMANVIELSNVNYEQRDNFQMEIAAVEQANRREQDDFENQM 244
[Close]
BLAST of mRNA_H-paniculata_contig8426.16428.1 vs. uniprot
Match: A0A7S1XXH8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXH8_9STRA)

HSP 1 Score: 267 bits (683), Expect = 8.040e-83
Identity = 144/222 (64.86%), Postives = 183/222 (82.43%), Query Frame = 1 
Query:   73 QDLQQLQREYRHMELNRRAYADESQQLLRKQQANMEKLRRENDSLKTELAMEFRQYRKPVDAGSAERTSQLQEQAGHYVTAIENEKRTIDTVAEQMALMKHKILHQRKIMGGVNAAKENEYMVQKQVRILENRLDKALTKFNEALAHNKTLRQEIDDLRRERVLFDVIYKKMERELSDRKKMMANVIELSNVNYEQRDNFQMEIAAVEQANRREQDDFENQV 738
            +D QQLQREYRHMELNR+AYADES Q++RKQQ N++KLRREN++LK+ +++E RQ  +P+     E+  +LQ++A  Y  A E EKR I  + EQ+  M+ +IL QRK MGGVNAA+EN+ MVQKQVRILENRLDKAL KFNE LA NK LRQ IDDLRRERV+FD IY+K+E++L ++K+ MAN+IELSN++YEQRDNFQMEIAA+EQANR+EQ DFE+Q+
Sbjct:   10 EDFQQLQREYRHMELNRKAYADESHQIMRKQQQNIDKLRRENETLKSSMSLEMRQRTQPLSDAQNEKVMRLQDEADAYTEANEKEKRNIMVLREQITHMRQEILRQRKAMGGVNAARENQAMVQKQVRILENRLDKALVKFNEVLAKNKVLRQTIDDLRRERVVFDNIYRKLEKDLEEKKRQMANIIELSNLSYEQRDNFQMEIAAIEQANRKEQQDFEDQM 231
[Close]
BLAST of mRNA_H-paniculata_contig8426.16428.1 vs. uniprot
Match: A0A7S3GTF5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTF5_9STRA)

HSP 1 Score: 256 bits (653), Expect = 7.740e-78
Identity = 140/228 (61.40%), Postives = 182/228 (79.82%), Query Frame = 1 
Query:   55 DPQQQVQDLQQLQREYRHMELNRRAYADESQQLLRKQQANMEKLRRENDSLKTELAMEFRQYRKPVDAGSAERTSQLQEQAGHYVTAIENEKRTIDTVAEQMALMKHKILHQRKIMGGVNAAKENEYMVQKQVRILENRLDKALTKFNEALAHNKTLRQEIDDLRRERVLFDVIYKKMERELSDRKKMMANVIELSNVNYEQRDNFQMEIAAVEQANRREQDDFENQV 738
            DP+QQ  +LQQLQ EYRHME+NRRAYADESQ LLRKQQAN++KLR++N++LK ++A+  R   +P+     E    L +Q   Y T+IE E+  I T+ EQ+ +M+ K L QR+ MGGVNA+KEN  M+QKQ+ ILENRLDK+L KFNEA++HNK+LR +IDDLRRERV+F+ IY+KMEREL DRKK MA +IE+SN +YEQRD FQME+AA+EQANR+EQ++FE Q+
Sbjct:    9 DPRQQ--ELQQLQHEYRHMEINRRAYADESQALLRKQQANIDKLRKDNETLKNDIAVIMRGSSRPMSTVQQEFIQALTDQGDKYATSIEFERANIQTMEEQIHIMRSKTLQQRRAMGGVNASKENHNMIQKQIHILENRLDKSLIKFNEAISHNKSLRDKIDDLRRERVVFENIYRKMERELQDRKKHMAEIIEISNQSYEQRDTFQMEVAAIEQANRKEQEEFEEQM 234
[Close]
BLAST of mRNA_H-paniculata_contig8426.16428.1 vs. uniprot
Match: A0A812PXP1_SYMMI (ODA1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812PXP1_SYMMI)

HSP 1 Score: 248 bits (633), Expect = 1.340e-77
Identity = 131/223 (58.74%), Postives = 177/223 (79.37%), Query Frame = 1 
Query:   70 VQDLQQLQREYRHMELNRRAYADESQQLLRKQQANMEKLRRENDSLKTELAMEFRQYRKPVDAGSAERTSQLQEQAGHYVTAIENEKRTIDTVAEQMALMKHKILHQRKIMGGVNAAKENEYMVQKQVRILENRLDKALTKFNEALAHNKTLRQEIDDLRRERVLFDVIYKKMERELSDRKKMMANVIELSNVNYEQRDNFQMEIAAVEQANRREQDDFENQV 738
            V +LQQLQREYRHMELNRRAYA+ESQ +LRKQQ+ ++KLR++N+ +K+E+A   R   + +     +  ++LQ+        I+ EKR I T+ EQ+ +MK K+L QRK MGGVNA+KEN +M+QKQ++ILENRLDK+L KFNEA+AHNK LR  IDDLRRERV+F+ IY+KMEREL ++K+ MA +IE+SN +YEQRD +QME+AA+EQANR+EQ++FE Q+
Sbjct:    9 VAELQQLQREYRHMELNRRAYAEESQMVLRKQQSTIDKLRKDNEMIKSEIASMMRSSNRQISTSQQDTINKLQDAGDRLANTIDFEKRNIQTMEEQIHIMKQKVLQQRKAMGGVNASKENFHMIQKQIKILENRLDKSLIKFNEAIAHNKKLRDSIDDLRRERVVFENIYRKMERELQEKKQKMAEIIEVSNASYEQRDAYQMEVAAIEQANRKEQEEFEEQM 231
[Close]
BLAST of mRNA_H-paniculata_contig8426.16428.1 vs. uniprot
Match: A0A7S0XDM7_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDM7_9STRA)

HSP 1 Score: 251 bits (642), Expect = 4.660e-77
Identity = 133/221 (60.18%), Postives = 179/221 (81.00%), Query Frame = 1 
Query:   76 DLQQLQREYRHMELNRRAYADESQQLLRKQQANMEKLRRENDSLKTELAMEFRQYRKPVDAGSAERTSQLQEQAGHYVTAIENEKRTIDTVAEQMALMKHKILHQRKIMGGVNAAKENEYMVQKQVRILENRLDKALTKFNEALAHNKTLRQEIDDLRRERVLFDVIYKKMERELSDRKKMMANVIELSNVNYEQRDNFQMEIAAVEQANRREQDDFENQV 738
            +L QLQREYRHMELNRRAY++E+Q LLRKQQ N++KLR++ND+L+ ++A+  R   KP+  G  E   +L EQ   YV AI+ EK  I  + EQ+ +MK KILHQR+ MGGVN+ ++N+YM++KQ++ILENRL+KAL KFNEA+A NKT R +IDDLRRERV+F+ IY+KME+EL ++KK MA +IE+SN +YEQRD +QMEI+A+EQANR+EQ+DFE Q+
Sbjct:   14 ELLQLQREYRHMELNRRAYSEETQALLRKQQQNIDKLRKDNDTLRNDIAVLMRGTSKPLSLGQQEEIQKLHEQIQKYVYAIDTEKNNIQVMEEQVDIMKQKILHQRRNMGGVNSTRDNQYMIEKQIKILENRLEKALIKFNEAVAQNKTYRDKIDDLRRERVVFENIYRKMEKELYEKKKKMAEIIEVSNQSYEQRDTYQMEISAIEQANRKEQEDFEEQM 234
[Close]
BLAST of mRNA_H-paniculata_contig8426.16428.1 vs. uniprot
Match: A0A1V9YI01_9STRA (Outer Dynein Arm Docking Complex (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YI01_9STRA)

HSP 1 Score: 232 bits (592), Expect = 3.340e-71
Identity = 122/216 (56.48%), Postives = 174/216 (80.56%), Query Frame = 1 
Query:   76 DLQQLQREYRHMELNRRAYADESQQLLRKQQANMEKLRRENDSLKTELAMEFRQYRKPVDAGSAERTSQLQEQAGHYVTAIENEKRTIDTVAEQMALMKHKILHQRKIMGGVNAAKENEYMVQKQVRILENRLDKALTKFNEALAHNKTLRQEIDDLRRERVLFDVIYKKMERELSDRKKMMANVIELSNVNYEQRDNFQMEIAAVEQANRREQDD 723
            D+ QLQREYR+ME+NR++Y DES Q++R+QQ+ +EKL+ +ND +K+ELA+  R   +       E  +++Q+Q   YV  I+NE +  DT+A+Q+ +MKHK+LHQ+K MGGVNAAKEN +M+ KQ+RILENRLDK+L KFNEALA NK LR+EID+LRRER++FD IY+K+E++ ++RKK MAN+IELSN++YEQRD+ Q+E+ A+EQ NR+E ++
Sbjct:    8 DINQLQREYRNMEMNRKSYTDESHQVMRRQQSVIEKLKHDNDDMKSELALATRHVTELNANLQQETINRMQDQIDSYVKRIQNESKHADTLAQQITIMKHKVLHQKKHMGGVNAAKENHHMINKQIRILENRLDKSLIKFNEALAQNKQLREEIDNLRRERMIFDNIYRKLEKDHNERKKQMANIIELSNLSYEQRDSAQVEVKAIEQINRQESEE 223
[Close]
BLAST of mRNA_H-paniculata_contig8426.16428.1 vs. uniprot
Match: A0A1V9YAR6_9STRA (Outer Dynein Arm Docking Complex n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAR6_9STRA)

HSP 1 Score: 234 bits (598), Expect = 1.920e-70
Identity = 124/221 (56.11%), Postives = 175/221 (79.19%), Query Frame = 1 
Query:   76 DLQQLQREYRHMELNRRAYADESQQLLRKQQANMEKLRRENDSLKTELAMEFRQYRKPVDAGSAERTSQLQEQAGHYVTAIENEKRTIDTVAEQMALMKHKILHQRKIMGGVNAAKENEYMVQKQVRILENRLDKALTKFNEALAHNKTLRQEIDDLRRERVLFDVIYKKMERELSDRKKMMANVIELSNVNYEQRDNFQMEIAAVEQANRREQDDFENQV 738
            D  QLQREYR+ME+NR++Y+DES Q++R+QQ+ +EKL+R+N+ +K+ELA+  R   +       E  +++Q+Q   YV  I  E +  +T+A+Q+ +MKHK+LHQRK MGGVNAAKEN +MV KQ+RILENRLDK+L KFNEALA NK LR+EID+LRRER++FD IY+K+E++ ++RKK MAN+IELSN++YEQRD+ QME+ A+EQ NR+E ++   Q+
Sbjct:    8 DFSQLQREYRNMEMNRKSYSDESHQVMRRQQSVIEKLKRDNEDMKSELALATRHVTESSATMQQESINRMQDQIDAYVKKISAETKHCETLAQQITIMKHKVLHQRKFMGGVNAAKENHHMVHKQIRILENRLDKSLVKFNEALAMNKVLREEIDNLRRERMIFDNIYRKLEKDHNERKKQMANIIELSNLSYEQRDSAQMEVKAIEQINRQEAEEHRRQI 228
[Close]
BLAST of mRNA_H-paniculata_contig8426.16428.1 vs. uniprot
Match: A0A067CJB9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJB9_SAPPC)

HSP 1 Score: 234 bits (598), Expect = 2.050e-70
Identity = 124/221 (56.11%), Postives = 175/221 (79.19%), Query Frame = 1 
Query:   76 DLQQLQREYRHMELNRRAYADESQQLLRKQQANMEKLRRENDSLKTELAMEFRQYRKPVDAGSAERTSQLQEQAGHYVTAIENEKRTIDTVAEQMALMKHKILHQRKIMGGVNAAKENEYMVQKQVRILENRLDKALTKFNEALAHNKTLRQEIDDLRRERVLFDVIYKKMERELSDRKKMMANVIELSNVNYEQRDNFQMEIAAVEQANRREQDDFENQV 738
            D  QLQREYR+ME+NR++Y+DES Q++R+QQ+ +EKL+R+ND +K+EL++  R   +      +E  +++Q+Q   YV  I  E +  +T+A+Q+ +MKHK+LHQRK MGGVNAAKEN +MV KQ+RILENRLDK+L KFNEALA NK LR+EID+LRRER++FD IY+K+E++ ++RKK MAN+IELSN++YEQRD  QME+ A+EQ NR+E ++   Q+
Sbjct:    8 DFSQLQREYRNMEMNRKSYSDESHQVMRRQQSVIEKLKRDNDDMKSELSLATRHLTEANANSQSESIARMQDQIDAYVKKIAGEAKHCETLAQQITIMKHKVLHQRKHMGGVNAAKENHHMVHKQIRILENRLDKSLVKFNEALAQNKVLREEIDNLRRERMIFDNIYRKLEKDHNERKKQMANIIELSNLSYEQRDAAQMEVKAIEQINRQEAEEHRRQI 228
[Close]
BLAST of mRNA_H-paniculata_contig8426.16428.1 vs. uniprot
Match: A0A485L6H0_9STRA (Aste57867_16889 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L6H0_9STRA)

HSP 1 Score: 232 bits (592), Expect = 3.410e-69
Identity = 123/221 (55.66%), Postives = 172/221 (77.83%), Query Frame = 1 
Query:   76 DLQQLQREYRHMELNRRAYADESQQLLRKQQANMEKLRRENDSLKTELAMEFRQYRKPVDAGSAERTSQLQEQAGHYVTAIENEKRTIDTVAEQMALMKHKILHQRKIMGGVNAAKENEYMVQKQVRILENRLDKALTKFNEALAHNKTLRQEIDDLRRERVLFDVIYKKMERELSDRKKMMANVIELSNVNYEQRDNFQMEIAAVEQANRREQDDFENQV 738
            D  QLQREYR+ME+NR++Y+DES Q++R+QQ  +EKL+R+N+ +K ELA+  R   +       E  +++Q+Q   Y   I  E +  +T+A+Q+ +MKHK+LHQ+K MGGVNAAKEN +MV KQ+RILENRLDK+L KFNEALA NK LR+EID+LRRER++FD IY+K+E++ ++RKK MAN+IELSN++YEQRD+ QMEI A+EQ NR+E ++   Q+
Sbjct:   19 DFTQLQREYRNMEMNRKSYSDESHQVMRRQQTVIEKLKRDNEDMKNELALATRHITESNATAQQESINRMQDQIDTYAKKIAAEAKQAETLAQQITIMKHKVLHQKKHMGGVNAAKENHHMVNKQIRILENRLDKSLVKFNEALAQNKVLREEIDNLRRERMIFDNIYRKLEKDHNERKKQMANIIELSNLSYEQRDSAQMEIKAIEQVNRQESEEHRRQI 239
[Close]
BLAST of mRNA_H-paniculata_contig8426.16428.1 vs. uniprot
Match: A0A024U2B8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2B8_9STRA)

HSP 1 Score: 231 bits (590), Expect = 4.520e-69
Identity = 123/221 (55.66%), Postives = 173/221 (78.28%), Query Frame = 1 
Query:   76 DLQQLQREYRHMELNRRAYADESQQLLRKQQANMEKLRRENDSLKTELAMEFRQYRKPVDAGSAERTSQLQEQAGHYVTAIENEKRTIDTVAEQMALMKHKILHQRKIMGGVNAAKENEYMVQKQVRILENRLDKALTKFNEALAHNKTLRQEIDDLRRERVLFDVIYKKMERELSDRKKMMANVIELSNVNYEQRDNFQMEIAAVEQANRREQDDFENQV 738
            D  QLQ+EYR+ME+NR++Y+DES Q++R+QQ  +EKL+R+N+ +K ELA+  R   +       E  +++Q+Q   YV  I  E +  +T+A+Q+ +MKHK+LHQ+K MGGVNAAKEN +MV KQ+RILENRLDK+L KFNEALA NK LR+EID+LRRER++FD IY+K+E++ ++RKK MAN+IELSN++YEQRD+ QMEI A+EQ NR+E ++   Q+
Sbjct:   12 DFTQLQKEYRNMEMNRKSYSDESHQVMRRQQTVIEKLKRDNEDMKNELALATRHITESSATAQQESINRMQDQIDTYVKKIAAETKHSETLAQQITIMKHKVLHQKKHMGGVNAAKENHHMVNKQIRILENRLDKSLVKFNEALAQNKILREEIDNLRRERMIFDNIYRKLEKDHNERKKQMANIIELSNLSYEQRDSAQMEIKAIEQVNRQEAEEHRRQI 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8426.16428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK12_ECTSI7.130e-12685.77Outer dynein arm docking complex protein like n=1 ... [more]
A0A7S1XXH8_9STRA8.040e-8364.86Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3GTF5_9STRA7.740e-7861.40Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A812PXP1_SYMMI1.340e-7758.74ODA1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A7S0XDM7_9STRA4.660e-7760.18Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A1V9YI01_9STRA3.340e-7156.48Outer Dynein Arm Docking Complex (Fragment) n=1 Ta... [more]
A0A1V9YAR6_9STRA1.920e-7056.11Outer Dynein Arm Docking Complex n=1 Tax=Achlya hy... [more]
A0A067CJB9_SAPPC2.050e-7056.11Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485L6H0_9STRA3.410e-6955.66Aste57867_16889 protein n=1 Tax=Aphanomyces stella... [more]
A0A024U2B8_9STRA4.520e-6955.66Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8426contigH-paniculata_contig8426:578..5215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score383.3
Seed ortholog evalue8.8e-104
Seed eggNOG ortholog2880.D7FK12
Preferred nameODA1
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036157,GO:0036158,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494
EggNOG free text desc.outer dynein arm assembly
EggNOG OGs28K4A@1,2QSIU@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size738
Cds size738
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8426.16428.1prot_H-paniculata_contig8426.16428.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8426 578..5215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931058.232351-CDS-H-paniculata_contig8426:577..6791622931058.232351-CDS-H-paniculata_contig8426:577..679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8426 578..679 -
1691481570.7719326-CDS-H-paniculata_contig8426:577..6791691481570.7719326-CDS-H-paniculata_contig8426:577..679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8426 578..679 -
1622931058.2508073-CDS-H-paniculata_contig8426:1364..14661622931058.2508073-CDS-H-paniculata_contig8426:1364..1466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8426 1365..1466 -
1691481570.7821584-CDS-H-paniculata_contig8426:1364..14661691481570.7821584-CDS-H-paniculata_contig8426:1364..1466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8426 1365..1466 -
1622931058.2759945-CDS-H-paniculata_contig8426:1992..20761622931058.2759945-CDS-H-paniculata_contig8426:1992..2076Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8426 1993..2076 -
1691481570.7935188-CDS-H-paniculata_contig8426:1992..20761691481570.7935188-CDS-H-paniculata_contig8426:1992..2076Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8426 1993..2076 -
1622931058.2944536-CDS-H-paniculata_contig8426:2629..27971622931058.2944536-CDS-H-paniculata_contig8426:2629..2797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8426 2630..2797 -
1691481570.8042688-CDS-H-paniculata_contig8426:2629..27971691481570.8042688-CDS-H-paniculata_contig8426:2629..2797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8426 2630..2797 -
1622931058.320727-CDS-H-paniculata_contig8426:3606..37201622931058.320727-CDS-H-paniculata_contig8426:3606..3720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8426 3607..3720 -
1691481570.8206823-CDS-H-paniculata_contig8426:3606..37201691481570.8206823-CDS-H-paniculata_contig8426:3606..3720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8426 3607..3720 -
1622931058.340466-CDS-H-paniculata_contig8426:5047..52151622931058.340466-CDS-H-paniculata_contig8426:5047..5215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8426 5048..5215 -
1691481570.8335402-CDS-H-paniculata_contig8426:5047..52151691481570.8335402-CDS-H-paniculata_contig8426:5047..5215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8426 5048..5215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8426.16428.1

>prot_H-paniculata_contig8426.16428.1 ID=prot_H-paniculata_contig8426.16428.1|Name=mRNA_H-paniculata_contig8426.16428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=246bp
MTSTMARSGVVGAVQPQGDPQQQVQDLQQLQREYRHMELNRRAYADESQQ
LLRKQQANMEKLRRENDSLKTELAMEFRQYRKPVDAGSAERTSQLQEQAG
HYVTAIENEKRTIDTVAEQMALMKHKILHQRKIMGGVNAAKENEYMVQKQ
VRILENRLDKALTKFNEALAHNKTLRQEIDDLRRERVLFDVIYKKMEREL
SDRKKMMANVIELSNVNYEQRDNFQMEIAAVEQANRREQDDFENQV
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mRNA from alignment at H-paniculata_contig8426:578..5215-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8426.16428.1 ID=mRNA_H-paniculata_contig8426.16428.1|Name=mRNA_H-paniculata_contig8426.16428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4638bp|location=Sequence derived from alignment at H-paniculata_contig8426:578..5215- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGTCTACCATGGCACGGTCCGGGGTTGTTGGGGCTGTTCAACCCCA
GGGGGATCCGCAGCAGCAGGTTCAGGATTTGCAACAGCTTCAGCGAGAGT
ACCGGCACATGGAACTCAATCGACGAGCCTACGCCGATGAGAGTCAACAA
CTACTCCGGAAGCAGCAGGTAAGCCGTACTTCCATCCATAACCTCGACGA
AATCTAGATACTATGCTATAAGGTGTGGGGTGTCGTGTCTTAGGAGACTC
ACGTTTATGCTGCCGTTTACATGTACACATGTGCCTGGATGATTCGTAGA
GGGTTGGCAGATATTCGAGATCCAGAATGCTAGGCCCTTCCTTCAGAAGG
GTCGCCTGAGATGAAAATAACATTAATTAATGCCGTGTAATCGCGGAGGT
TTGGTCATGAGCGACCCCCCCTTCCCTCCTAACAATAGAATACCTATTCA
ATGCGGTGCACAATTGATCGTTTCCGGTGTGAAGAGGCATAGCGACTGTC
TGCATGACTCTTGCAAACTCTACCTGCTGTTGGAAAGTCGCGACGACCTC
ATCTACGTAAATCAATACACGACATCAACTCTGCGGACAGCTAGTGTCTT
CGCAGATCGGTTGAAACCTACGCAATCGAATCTTACGGTGTAGCGTTTGG
GTAGTTTTCTTGATAACAATACTACTGTCTGTTTTGTACTGCATTCATAA
AAATACCAGTAAAGGTGAACACCATGTTTAAAGATAATGCAGTTGAGTGA
ACCCGACAACACAACCTGCTGTGTATTTCTGATATACCAACTTCACGTAT
TGTCCACTCTATCGTCATTTTCAACCGGGCTCTGCCAACGCACTTTCAGT
CAGATGCGAGCTTCACCAACGCGCGGATACATATACATTTTCTATCTGCT
CATGTACATACTCACGCTCTGTAAATGTAGTAAGGTCAGCTGTAGGCTCT
GTCAAAGCACACACATGCGCGCGCTGCCAACGCAATCTTAACCTCCGCCA
ATGCACACTAGGATCGATGGGTTTGGGTTCAGGATTACCGGTACTGTTAG
AGTTAGACTTGGTGGGGTGACGCCAGTGCAAGTTAGGTTAGATGTGAATT
TTGCCAACGCACACACGAGCCAACTTCTATTCCAACGGCTGCAGGTGGGA
AATAACGATAGGGTGTGTATTACCCGTGGTTGATTTATAAGAAATACCCC
AGCAGTTGTGCAAAACCAGCTCCGTATGTGGAAGCATGTGTCGGATATAA
TCCGTATTTCAAGTTTACTTGCAATTATATCTTGAACGTCATCCAGCTAA
CGTCTGATCAACGAGATTTACGTTTAACCTTCAAGTGCGGTTTATTAGTC
CGGTAGTGCAGGACAATCAATTTGTTATTTTGCATCGCTTGTAGATGTAC
AACATACTTCGAGCTATAAGATTTGTCTCCAAAAAGAATATGCCACATTC
CTTGGCTTCTCATCAACTACATCATCGTGCACTTCTGCGTCGTAGGCGAA
TATGGAGAAACTGAGGCGGGAAAACGACTCCCTGAAGACGGAGCTAGCCA
TGGAATTCAGGCAGTACAGGAAGCCCGTTGATGCGGGTTCGGCAGAGCGC
ACATCGCAGGTAAAATTCCCCAAGGAGGGCATACGTGAAAATTGATTGAA
TTGGGACTTATGCTGGTTTCCGTGACCACGCTTCGCGTTGGTGTGTACCT
CCTGCCCGTATAGTTTACAGTGGCCTGAGGAACGAAGGTTCAGACGACCT
CAATAATCATCAAGATGTAGGCTCTAGGCGGGTACTGTGCCTCGGTTGTT
ATTTTCTTTGCCAAGATTTTTCACGGTGCATGAGGAGAGTTGGGCAGTAT
GCTGGATCTCTTTCGGGATAAGGAATTCACATTGTTCATCGCCCAGCCAA
AACTCTCGGTAATATCATAAAGGTTGGAGACGTGACTATGAAACACAGTT
AATTTGGGATCGTGTGTGTTCATATGGGGCTAACCAGACGCTAGGCATGT
TAAACGGACGGGCTCACTGCATGGTCGCAATATGCGAGTTTGAGTGAGAA
CGCAGTCGAGATTTGATGCAGAATTAAATGTTTGCAGAGTGATCACTAGT
GTATGTGGCGCCATCGAGTGACTTTTGATATCTAACATTAAATGTTTTCT
TAAATATTTAAATGTTCGTACACCTGACCCCTCACTGACCAAATAGCGTG
ACGATCGAGGTCGTAATTCAAATCAACGTATGTTACGCAGCAATTATTCC
ATGAATTCATGTCCAATGAACGGTATGCTGCAGGGTTTTGGGCTCAGGCA
CATGATGGGAGAAAAATCGCGGTGCAATCTTGTACACACATATCACCACG
CACCACTAGCTTCATGTTTCAACTATAGTTTCTCAATGCCAACATCAAAT
TAACCCTGAACGATACAGCTGCAAGAGCAAGCGGGCCACTACGTAACGGC
CATCGAAAACGAGAAACGTACCATCGATACGGTAGCCGAGCAGATGGCAC
TGATGAAACACAAGATTCTACACCAGCGGAAGATTATGGGTGGCGTCAAT
GCAGCCAAGGAAAATGAGTACATGGTGCAGAAACAGGTGCGGTGGCGTGC
GTTTTCGCCCCAACAAAACTCACAGAAAGACTTCGTTCTCGTTGCGTGTG
CGGAGTTGCCCGATACGGATGTAGCTGTCAGCGTTCGATATCTGGTAGAT
ACACGAATAACCTTAGAGTGAGTCGACTGGCAGCGAACGACTGCCCTGGC
ATGGATGAGCAGCTAGACACACACAGGAAAGTAAAGACGCCCTCCACCTG
CCTCTTCATAGACACATCTCGAAATATGGCTAGGGGAAGTCTTGAGTTTT
CGTAGTTTTGAGTGTTGTTGGCGTATCCTTTGTCCTTGTCCGTCGTCTTT
CCGTATGATAACCATCCCGCCATCGAGAACATCTGGGGATAGTTGTTGCC
ATTCACTTGTCATCACGAAGCATGACTCCCGGGAAATATGTAGGATTTCC
CCACCCGTGCGCTCTCAACCCCTTTCTGCGCTACATGTAGGTACTGCCAC
GACGCATGACCAGTATGGGTAACACGCATAACCCCCGTCCTGTTCCTCAA
TCACGTTCCAACTTGGAATATATACCTCTCGTGGAAAAGGTTCGAATCTT
GGAAAATCGACTGGACAAGGCGCTGACTAAATTCAACGAAGCCCTGGCTC
ACAACAAGACTCTTCGACAAGAGGTGAACACAAAACAAGTGCCAGTCGCC
GTGTGGTAGATTCATTCAGCAGTGTAGCCGTGCCGAAGCCAACAATAGGA
CAGTTTCTTTCGGCCGTCGTAATTTGTTTTCTCCACAAGTTTTTGCCACT
TGGTGCTTGCATTCGGCGTGATGCTGAATATATATATATGTGTGTGTGTG
TGTTTGTGTTATAAATACCTTTCGGAAATAGGTTCGCTGTGAGACATACT
CTCCTCCCTGTTAGGTCTGGTTCCCCCGGAGCCTTGGGCAAACATACCCG
CTGTGTTTGACCGCGCGTGTTTTGAAGAAGAAACCTAGATGTTGCCTCGA
CAAAGATCCCTGTATCAACGTCCAACATTTGCTGTTGGTTAGCTCTTCCT
TGAACTTACTCTCCCTCACCTGGACGTATCTTACGTACCCCCCCCAGCCC
CCTCCCTGTGCAATGCCCTCTATGTCGGAATGTTTCCTACTTTTCGGACA
TTTCGCGGCGTTTTTTGTTTCTCATAAAAAATTATCGTGCGCCGAGAAGA
TCGACGATCTTCGACGGGAGCGCGTGCTGTTTGACGTCATCTACAAAAAG
ATGGAGCGGGAGCTGTCCGACAGGAAAAAAATGATGGCCAACGTTATTGA
GGTATCGTACGTATTTTACTCCTTTTATTGCGCACTTGTCGGCGACCATT
GTGTATATCGGAACATGCGCTAGATCGCGGTCAAATAGAGCCACACGTTG
ACCTTTTGTAAAGCACACAGGACATACCCTATGTACGATAGAGAAAGGCT
AGTCGTTTGTTTTGCAGAGGATATTAAGAGTTCCCTGATCTTGCTATCGG
CTATGCGCTGCCAGGATGCATAGCCGGCAGGTTCTGTGTGCGATCGGTAC
ATAAACGGCAAATGCTGATAACGGACAGAGGACAATAAGAGCTAAAAATG
GCCGAGATCTACAGTCAGTCTCCCACAGCATAACGTTGGAAAAAGAAAAT
GTTGTAACAATAGTCAGTGCATTCCGATTTCGTCATATACCGAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCACCACCACCACCACCACCACCACTAGCA
CCACCACCACCATTACTGCCACTACTACTACTTTTTTATTTTATTTTTTT
AACCCCCGGAAGGCTGAGGCAAAAACCTTTTCCGCTGCTTCCACATTCAG
GTATTCACCCAAACATGTGCCACTACTACCTTTACCCCACCCTTATCTTC
CTCTTCATCTTCTCGAATCCTTCGTACGCTAAAGACATCCGTTGATCTTC
GCCCTGAACATCATCATGTGCGCGATTAAACAACAGCTCAGCAACGTTAA
TTATGAACAGCGAGATAATTTCCAGATGGAAATCGCGGCCGTAGAGCAGG
CCAATCGACGCGAGCAAGATGACTTCGAGAACCAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig8426:578..5215-

>mRNA_H-paniculata_contig8426.16428.1 ID=mRNA_H-paniculata_contig8426.16428.1|Name=mRNA_H-paniculata_contig8426.16428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at H-paniculata_contig8426:578..5215- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGTCTACCATGGCACGGTCCGGGGTTGTTGGGGCTGTTCAACCCCA
GGGGGATCCGCAGCAGCAGGTTCAGGATTTGCAACAGCTTCAGCGAGAGT
ACCGGCACATGGAACTCAATCGACGAGCCTACGCCGATGAGAGTCAACAA
CTACTCCGGAAGCAGCAGATGACGTCTACCATGGCACGGTCCGGGGTTGT
TGGGGCTGTTCAACCCCAGGGGGATCCGCAGCAGCAGGTTCAGGATTTGC
AACAGCTTCAGCGAGAGTACCGGCACATGGAACTCAATCGACGAGCCTAC
GCCGATGAGAGTCAACAACTACTCCGGAAGCAGCAGGCGAATATGGAGAA
ACTGAGGCGGGAAAACGACTCCCTGAAGACGGAGCTAGCCATGGAATTCA
GGCAGTACAGGAAGCCCGTTGATGCGGGTTCGGCAGAGCGCACATCGCAG
GCGAATATGGAGAAACTGAGGCGGGAAAACGACTCCCTGAAGACGGAGCT
AGCCATGGAATTCAGGCAGTACAGGAAGCCCGTTGATGCGGGTTCGGCAG
AGCGCACATCGCAGCTGCAAGAGCAAGCGGGCCACTACGTAACGGCCATC
GAAAACGAGAAACGTACCATCGATACGGTAGCCGAGCAGATGGCACTGAT
GAAACACAAGATTCTACACCAGCGGAAGATTATGGGTGGCGTCAATGCAG
CCAAGGAAAATGAGTACATGGTGCAGAAACAGCTGCAAGAGCAAGCGGGC
CACTACGTAACGGCCATCGAAAACGAGAAACGTACCATCGATACGGTAGC
CGAGCAGATGGCACTGATGAAACACAAGATTCTACACCAGCGGAAGATTA
TGGGTGGCGTCAATGCAGCCAAGGAAAATGAGTACATGGTGCAGAAACAG
GTTCGAATCTTGGAAAATCGACTGGACAAGGCGCTGACTAAATTCAACGA
AGCCCTGGCTCACAACAAGACTCTTCGACAAGAGGTTCGAATCTTGGAAA
ATCGACTGGACAAGGCGCTGACTAAATTCAACGAAGCCCTGGCTCACAAC
AAGACTCTTCGACAAGAGATCGACGATCTTCGACGGGAGCGCGTGCTGTT
TGACGTCATCTACAAAAAGATGGAGCGGGAGCTGTCCGACAGGAAAAAAA
TGATGGCCAACGTTATTGAGATCGACGATCTTCGACGGGAGCGCGTGCTG
TTTGACGTCATCTACAAAAAGATGGAGCGGGAGCTGTCCGACAGGAAAAA
AATGATGGCCAACGTTATTGAGCTCAGCAACGTTAATTATGAACAGCGAG
ATAATTTCCAGATGGAAATCGCGGCCGTAGAGCAGGCCAATCGACGCGAG
CAAGATGACTTCGAGAACCAGGTACTCAGCAACGTTAATTATGAACAGCG
AGATAATTTCCAGATGGAAATCGCGGCCGTAGAGCAGGCCAATCGACGCG
AGCAAGATGACTTCGAGAACCAGGTA
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