mRNA_H-paniculata_contig842.16426.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig842.16426.1
Unique NamemRNA_H-paniculata_contig842.16426.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig842.16426.1 vs. uniprot
Match: A0A6H5J9F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9F0_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 2.740e-5
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 2 
Query:   44 RETELDLLCGSATNANHGGQLQVIVSGPKGFILNVRNILNELGVPQRALVLL 199
            R   LD L G+ T    GG+LQV+VSGP GF+  V +IL E+GVP  A+V L
Sbjct:   69 RGITLDDLAGTDTE---GGKLQVVVSGPNGFVFYVESILAEMGVPSEAIVFL 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig842.16426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J9F0_9PHAE2.740e-551.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig842contigH-paniculata_contig842:21058..21723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size465
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig842.16426.1prot_H-paniculata_contig842.16426.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig842 21205..21657 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.6915703-UTR-H-paniculata_contig842:21057..212041622931057.6915703-UTR-H-paniculata_contig842:21057..21204Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig842 21058..21204 -
1691481570.5103555-UTR-H-paniculata_contig842:21057..212041691481570.5103555-UTR-H-paniculata_contig842:21057..21204Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig842 21058..21204 -
1622931057.7385461-UTR-H-paniculata_contig842:21657..217231622931057.7385461-UTR-H-paniculata_contig842:21657..21723Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig842 21658..21723 -
1691481570.5371351-UTR-H-paniculata_contig842:21657..217231691481570.5371351-UTR-H-paniculata_contig842:21657..21723Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig842 21658..21723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.712435-CDS-H-paniculata_contig842:21204..214131622931057.712435-CDS-H-paniculata_contig842:21204..21413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig842 21205..21413 -
1691481570.5192597-CDS-H-paniculata_contig842:21204..214131691481570.5192597-CDS-H-paniculata_contig842:21204..21413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig842 21205..21413 -
1622931057.7250032-CDS-H-paniculata_contig842:21614..216571622931057.7250032-CDS-H-paniculata_contig842:21614..21657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig842 21615..21657 -
1691481570.5278528-CDS-H-paniculata_contig842:21614..216571691481570.5278528-CDS-H-paniculata_contig842:21614..21657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig842 21615..21657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig842.16426.1

>prot_H-paniculata_contig842.16426.1 ID=prot_H-paniculata_contig842.16426.1|Name=mRNA_H-paniculata_contig842.16426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MRKCNERKSWWAAAGDRLWPQRVYFERAEHSQRVRSATESFGASTMIGGK
DNEHRSSFEAFLCVKNAGSKCWRDSYRTCAYVT*
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mRNA from alignment at H-paniculata_contig842:21058..21723-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig842.16426.1 ID=mRNA_H-paniculata_contig842.16426.1|Name=mRNA_H-paniculata_contig842.16426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=666bp|location=Sequence derived from alignment at H-paniculata_contig842:21058..21723- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGGCAATGCTCGCCAGGCTTCACGAGCAGGCACCCGCTGGTAGAGAGA
CAGAGCTGGACTTGCTATGCGGAAGTGCAACGAACGCAAATCATGGTGGG
CAGCTGCAGGTATGCAAGTCCATATAGGTTTTTGTGTTCGTCTTGCGGAG
TTGATGGAAAATTAGTTCAACAAAAATGAAACATATAATGCGGGCGCAGC
TCTCTCCGTTCTTTGACAATTCAAGCTATTGTTTAGCTATCACGTGTGCT
TATGCCTTCCGATTCTGTGCCTTCTCTACCCGCCGATTATTTTGTACACG
TCGGTTACAGGTGATCGTCTCTGGCCCCAAAGGGTTTATTTTGAACGTGC
GGAACATTCTCAACGAGTTAGGAGTGCCACAGAGAGCTTTGGTGCTTCTA
CCATGATAGGCGGAAAGGACAACGAGCATCGTTCGTCATTTGAAGCGTTC
TTGTGTGTCAAAAATGCAGGATCTAAGTGTTGGCGTGATTCATATAGGAC
TTGCGCGTATGTAACGTAGCTTCTGGTGCTGACGTTTGCCCAAGGCTGAC
GTTTTGCCGAGGGTAATTTCTTTTGACTAGCTTTCAATTGGGTGAAGATT
AGGCATTTGCAAGTGGGATTGAACTGTGGTGTATGACTTTGTGGGGCATT
TAATGCTTAAATTCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig842:21058..21723-

>mRNA_H-paniculata_contig842.16426.1 ID=mRNA_H-paniculata_contig842.16426.1|Name=mRNA_H-paniculata_contig842.16426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig842:21058..21723- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGAAGTGCAACGAACGCAAATCATGGTGGGCAGCTGCAGATGCGGA
AGTGCAACGAACGCAAATCATGGTGGGCAGCTGCAGGTGATCGTCTCTGG
CCCCAAAGGGTTTATTTTGAACGTGCGGAACATTCTCAACGAGTTAGGAG
TGCCACAGAGAGCTTTGGTGCTTCTACCATGATAGGCGGAAAGGACAACG
AGCATCGTTCGTCATTTGAAGCGTTCTTGTGTGTCAAAAATGCAGGATCT
AAGTGTTGGCGTGATTCATATAGGACTTGCGCGTATGTAACGTAGGTGAT
CGTCTCTGGCCCCAAAGGGTTTATTTTGAACGTGCGGAACATTCTCAACG
AGTTAGGAGTGCCACAGAGAGCTTTGGTGCTTCTACCATGATAGGCGGAA
AGGACAACGAGCATCGTTCGTCATTTGAAGCGTTCTTGTGTGTCAAAAAT
GCAGGATCTAAGTGTTGGCGTGATTCATATAGGACTTGCGCGTATGTAAC
GTAG
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