mRNA_H-paniculata_contig841.16420.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig841.16420.1
Unique NamemRNA_H-paniculata_contig841.16420.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig841.16420.1 vs. uniprot
Match: D8LDX4_ECTSI (Fumarate hydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX4_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 1.030e-57
Identity = 93/108 (86.11%), Postives = 100/108 (92.59%), Query Frame = 1
Query:    1 FGVLKKCAAKYSMGKGKLDKVIGEAIIEAAEEVAQGKLDDHFPLVVFQTGSGTQTNMNCNEVIANRAIEILGGVMGSKSPVHPNDHVNMGQSSNDSFPTAMHIAAVFQ 324
            FGVLKKC A YSM KGKL+K +GEAI+EAA+EV +GKLDDHFPLVVFQTGSGTQTNMNCNEVI+NRAIEILGGV GSK PVHPNDHVNMGQSSNDSFPTAMHIAA+ Q
Sbjct:   65 FGVLKKCCALYSMSKGKLNKDVGEAIVEAADEVIRGKLDDHFPLVVFQTGSGTQTNMNCNEVISNRAIEILGGVKGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAIMQ 172          
BLAST of mRNA_H-paniculata_contig841.16420.1 vs. uniprot
Match: A0A6H5JEX1_9PHAE (Fumarate hydratase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX1_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.130e-55
Identity = 91/110 (82.73%), Postives = 99/110 (90.00%), Query Frame = 1
Query:    1 FGVLKKCAAKYSMGKGKLDKVIGEAIIEAAEEVAQGKLDDHFPLVVFQTGSGTQTNMNCNEVIANR--AIEILGGVMGSKSPVHPNDHVNMGQSSNDSFPTAMHIAAVFQ 324
            FGVLKKC A YSM KGKL++ +GEAI++AA+EV QGKLDDHFPLVVFQTGSGTQTNMNCNEVI+NR  AIEILGG  GSK PVHPNDHVNMGQSSNDSFPTAMHIAA+ Q
Sbjct:    4 FGVLKKCCALYSMSKGKLNQDVGEAIVKAADEVIQGKLDDHFPLVVFQTGSGTQTNMNCNEVISNRHVAIEILGGAKGSKKPVHPNDHVNMGQSSNDSFPTAMHIAAIMQ 113          
BLAST of mRNA_H-paniculata_contig841.16420.1 vs. uniprot
Match: A0A397D1L0_9STRA (Lyase_1 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D1L0_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.350e-54
Identity = 84/108 (77.78%), Postives = 97/108 (89.81%), Query Frame = 1
Query:    4 GVLKKCAAKYSMGKGKLDKVIGEAIIEAAEEVAQGKLDDHFPLVVFQTGSGTQTNMNCNEVIANRAIEILGGVMGSKSPVHPNDHVNMGQSSNDSFPTAMHIAAVFQV 327
            G++KKCAAKY++  GKLDK I E II+AA++V  GKLDDHFPLVVFQTGSGTQ+NMN NEVI+NRAIE +GG +GSKSPVHPNDHVNMGQSSNDSFPTAMHIAAV ++
Sbjct:   73 GIVKKCAAKYNLKLGKLDKAIAENIIKAADDVIAGKLDDHFPLVVFQTGSGTQSNMNTNEVISNRAIEFMGGELGSKSPVHPNDHVNMGQSSNDSFPTAMHIAAVLEI 180          
BLAST of mRNA_H-paniculata_contig841.16420.1 vs. uniprot
Match: A0A835YLQ6_9STRA (Fumarate hydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLQ6_9STRA)

HSP 1 Score: 182 bits (463), Expect = 2.590e-53
Identity = 86/108 (79.63%), Postives = 98/108 (90.74%), Query Frame = 1
Query:    1 FGVLKKCAAKYSMGKGKLDKVIGEAIIEAAEEVAQGKLDDHFPLVVFQTGSGTQTNMNCNEVIANRAIEILGGVMGSKSPVHPNDHVNMGQSSNDSFPTAMHIAAVFQ 324
            FGVLKKCAA+Y+M  GKLD+ +G+AI++A +EV  GK DDHFPLVVFQTGSGTQTNMN NEV++NRAIEILGG +GSK+PVHPNDHVNMGQSSNDSFPTAMHIAAV Q
Sbjct:   75 FGVLKKCAAQYNMSVGKLDRKLGDAIVQACDEVLAGKFDDHFPLVVFQTGSGTQTNMNVNEVVSNRAIEILGGALGSKTPVHPNDHVNMGQSSNDSFPTAMHIAAVAQ 182          
BLAST of mRNA_H-paniculata_contig841.16420.1 vs. uniprot
Match: A0A8J2SCA1_9STRA (Fumarate hydratase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SCA1_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.120e-52
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 1
Query:    1 FGVLKKCAAKYSMGKGKLDKVIGEAIIEAAEEVAQGKLDDHFPLVVFQTGSGTQTNMNCNEVIANRAIEILGGVMGSKSPVHPNDHVNMGQSSNDSFPTAMHIAAVFQVRYR 336
            FGVLKKC+A Y+   G+LD+ I +AI  AA+EVA GKLDDHFPLVV+QTGSGTQTNMNCNEVIANRAIE+LGGV+GSK PVHPNDHVNMGQSSNDSFPTAMHI+AV ++  R
Sbjct:   66 FGVLKKCSALYNKRTGRLDEKIADAIAAAADEVASGKLDDHFPLVVYQTGSGTQTNMNCNEVIANRAIELLGGVIGSKEPVHPNDHVNMGQSSNDSFPTAMHISAVTELENR 177          
BLAST of mRNA_H-paniculata_contig841.16420.1 vs. uniprot
Match: A0A2D4BP08_PYTIN (Fumarate hydratase n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BP08_PYTIN)

HSP 1 Score: 179 bits (454), Expect = 3.810e-52
Identity = 85/109 (77.98%), Postives = 98/109 (89.91%), Query Frame = 1
Query:    1 FGVLKKCAAKYSMGKGKLDKVIGEAIIEAAEEVAQGKLDDHFPLVVFQTGSGTQTNMNCNEVIANRAIEILGGVMGSKSPVHPNDHVNMGQSSNDSFPTAMHIAAVFQV 327
            FGV+KKCAAKY++ KGKLD  I + I++AA++V QGKLD+HFPLVVFQTGSGTQ+NMN NEVIANRAIE  GG +GSKSPVHPNDHVNMGQSSNDSFPTAMHIAAV ++
Sbjct:   60 FGVVKKCAAKYNLQKGKLDAKIADVIVKAADDVIQGKLDEHFPLVVFQTGSGTQSNMNTNEVIANRAIEYAGGELGSKSPVHPNDHVNMGQSSNDSFPTAMHIAAVMEI 168          
BLAST of mRNA_H-paniculata_contig841.16420.1 vs. uniprot
Match: A0A2W4RRY7_9PROT (Class II fumarate hydratase (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4RRY7_9PROT)

HSP 1 Score: 168 bits (425), Expect = 3.310e-51
Identity = 80/110 (72.73%), Postives = 95/110 (86.36%), Query Frame = 1
Query:    4 GVLKKCAAKYSMGKGKLDKVIGEAIIEAAEEVAQGKLDDHFPLVVFQTGSGTQTNMNCNEVIANRAIEILGGVMGSKSPVHPNDHVNMGQSSNDSFPTAMHIAAVFQVRY 333
            G++K+ AA+ +M  G+LD+ IGEAI++AA+EV  GKLDDHFPLVV+QTGSGTQTNMN NEVIANRAIEILGG  GSK PVHPNDHVNM QSSND++PTAMHIAA  Q+ +
Sbjct:   56 GIIKRAAAETNMALGRLDRKIGEAIVKAAQEVIDGKLDDHFPLVVWQTGSGTQTNMNANEVIANRAIEILGGERGSKKPVHPNDHVNMSQSSNDTYPTAMHIAAAEQIHH 165          
BLAST of mRNA_H-paniculata_contig841.16420.1 vs. uniprot
Match: A0A836CH65_9STRA (Fumarate hydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH65_9STRA)

HSP 1 Score: 175 bits (444), Expect = 9.980e-51
Identity = 83/108 (76.85%), Postives = 95/108 (87.96%), Query Frame = 1
Query:    1 FGVLKKCAAKYSMGKGKLDKVIGEAIIEAAEEVAQGKLDDHFPLVVFQTGSGTQTNMNCNEVIANRAIEILGGVMGSKSPVHPNDHVNMGQSSNDSFPTAMHIAAVFQ 324
            FGVLKKCAA+Y+M +GKLD  +G A+  A +E+  GK DDHFPLV+FQTGSGTQTNMN NEVI+NRAIE+LGG +GSK+PVHPNDHVNMGQSSNDSFPTAMHIAAV Q
Sbjct:   49 FGVLKKCAAQYNMQQGKLDAKLGGALTAACDEILAGKFDDHFPLVIFQTGSGTQTNMNVNEVISNRAIEMLGGALGSKTPVHPNDHVNMGQSSNDSFPTAMHIAAVTQ 156          
BLAST of mRNA_H-paniculata_contig841.16420.1 vs. uniprot
Match: W2Q158_PHYPN (Fumarate hydratase n=23 Tax=Peronosporaceae TaxID=4777 RepID=W2Q158_PHYPN)

HSP 1 Score: 176 bits (447), Expect = 1.090e-50
Identity = 83/109 (76.15%), Postives = 98/109 (89.91%), Query Frame = 1
Query:    1 FGVLKKCAAKYSMGKGKLDKVIGEAIIEAAEEVAQGKLDDHFPLVVFQTGSGTQTNMNCNEVIANRAIEILGGVMGSKSPVHPNDHVNMGQSSNDSFPTAMHIAAVFQV 327
            FGV+KKCAAKY++ +GKLD  + + II AA++V  GKLDDHFPLVVFQTGSGTQ+NMN NEVI+NRAIE+ GGV+GSK+PVHPNDHVNMGQSSNDSFPTAMHIAAV ++
Sbjct:  113 FGVVKKCAAKYNLQQGKLDAAVADKIIAAADDVIAGKLDDHFPLVVFQTGSGTQSNMNTNEVISNRAIELAGGVLGSKTPVHPNDHVNMGQSSNDSFPTAMHIAAVQEI 221          
BLAST of mRNA_H-paniculata_contig841.16420.1 vs. uniprot
Match: A0A8H7S7J2_9FUNG (Fumarate hydratase n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S7J2_9FUNG)

HSP 1 Score: 175 bits (443), Expect = 1.270e-50
Identity = 85/109 (77.98%), Postives = 97/109 (88.99%), Query Frame = 1
Query:    1 FGVLKKCAAKYSMGKGKLDKVIGEAIIEAAEEVAQGKLDDHFPLVVFQTGSGTQTNMNCNEVIANRAIEILGGVMGSKSPVHPNDHVNMGQSSNDSFPTAMHIAAVFQV 327
            FG LKK AAK +M  G LDK IG+AII+AA+EV  GKLDDHFPLV++QTGSGTQT+MN NEV++NRAIEILGG MGSK+PVHPNDHVNMGQSSNDSFPTAMHIAAV ++
Sbjct:   53 FGTLKKAAAKVNMSYGILDKQIGDAIIQAADEVISGKLDDHFPLVIWQTGSGTQTHMNVNEVLSNRAIEILGGEMGSKTPVHPNDHVNMGQSSNDSFPTAMHIAAVVEI 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig841.16420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDX4_ECTSI1.030e-5786.11Fumarate hydratase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JEX1_9PHAE1.130e-5582.73Fumarate hydratase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A397D1L0_9STRA2.350e-5477.78Lyase_1 domain-containing protein (Fragment) n=1 T... [more]
A0A835YLQ6_9STRA2.590e-5379.63Fumarate hydratase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A8J2SCA1_9STRA1.120e-5277.68Fumarate hydratase n=1 Tax=Pelagomonas calceolata ... [more]
A0A2D4BP08_PYTIN3.810e-5277.98Fumarate hydratase n=2 Tax=Pythium TaxID=4797 RepI... [more]
A0A2W4RRY7_9PROT3.310e-5172.73Class II fumarate hydratase (Fragment) n=1 Tax=Pro... [more]
A0A836CH65_9STRA9.980e-5176.85Fumarate hydratase n=1 Tax=Tribonema minus TaxID=3... [more]
W2Q158_PHYPN1.090e-5076.15Fumarate hydratase n=23 Tax=Peronosporaceae TaxID=... [more]
A0A8H7S7J2_9FUNG1.270e-5077.98Fumarate hydratase n=1 Tax=Mucor circinatus TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig841contigH-paniculata_contig841:5040..6015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.9
Seed ortholog evalue2e-47
Seed eggNOG ortholog2880.D8LDX4
KEGG rclassRC00443
KEGG koko:K01679
KEGG ReactionR01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211
KEGG ModuleM00009,M00011,M00173,M00376
Hectar predicted targeting categoryother localisation
EggNOG free text desc.fumarate hydratase activity
EggNOG OGsCOG0114@1,KOG1317@2759
EC4.2.1.2
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons3
Model size336
Cds size336
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig841.16420.1prot_H-paniculata_contig841.16420.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig841 5040..6015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.160565-CDS-H-paniculata_contig841:5039..51781622931057.160565-CDS-H-paniculata_contig841:5039..5178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig841 5040..5178 -
1691481570.3146634-CDS-H-paniculata_contig841:5039..51781691481570.3146634-CDS-H-paniculata_contig841:5039..5178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig841 5040..5178 -
1622931057.1750617-CDS-H-paniculata_contig841:5471..55721622931057.1750617-CDS-H-paniculata_contig841:5471..5572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig841 5472..5572 -
1691481570.3262763-CDS-H-paniculata_contig841:5471..55721691481570.3262763-CDS-H-paniculata_contig841:5471..5572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig841 5472..5572 -
1622931057.193863-CDS-H-paniculata_contig841:5919..60151622931057.193863-CDS-H-paniculata_contig841:5919..6015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig841 5920..6015 -
1691481570.337755-CDS-H-paniculata_contig841:5919..60151691481570.337755-CDS-H-paniculata_contig841:5919..6015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig841 5920..6015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig841.16420.1

>prot_H-paniculata_contig841.16420.1 ID=prot_H-paniculata_contig841.16420.1|Name=mRNA_H-paniculata_contig841.16420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
FGVLKKCAAKYSMGKGKLDKVIGEAIIEAAEEVAQGKLDDHFPLVVFQTG
SGTQTNMNCNEVIANRAIEILGGVMGSKSPVHPNDHVNMGQSSNDSFPTA
MHIAAVFQVRYR
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mRNA from alignment at H-paniculata_contig841:5040..6015-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig841.16420.1 ID=mRNA_H-paniculata_contig841.16420.1|Name=mRNA_H-paniculata_contig841.16420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=976bp|location=Sequence derived from alignment at H-paniculata_contig841:5040..6015- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGGCGTGCTGAAGAAGTGTGCTGCGAAGTACAGCATGGGCAAGGGGAA GCTTGACAAGGTTATAGGCGAGGCGATTATTGAGGCCGCTGAAGAGGTAA ACGAGTACACATACATGCTCAATATCTGTTGTCCAACGGCTTTTTCGTTT CGAAGCAGCTTTTGGCGCCATTTTCCATTTTGGGGTTGTCGTCCTTCCAT TCGAAATCCAATAACGACAGCCTACAGTCCAAAGATATGCGCACCCTCGA AAGCACCTGCCGTAGGTGTGACTAAAGGTGAAAGTGCCCACCCCTCCATA ACAACAGCACATCGGCAAACCCCACCCGTTCGCCTTCTTTCTCGATTCCC TGGCTGCCGTTCCCGTTACCGGCTATGTTATTTTCATTGTTTTGCACTAC TACTCGCGGTACACAATCCCACGTGTTGTCAACCCCGCTTCAGGTTGCGC AAGGGAAACTCGACGACCACTTTCCGTTGGTCGTGTTTCAGACCGGCAGT GGCACTCAGACGAACATGAACTGTAATGAGGTCATCGCGAACAGGTGCGC GTTTGGCCTTTTTTTTGTTTTCCTTCATAAGATTTTTTTCCGGTGTGAAA ATGGATGTCAGCAATGGGTCACGCTATGCGTTGCTATTGAATGTTGAGGT GTTGCTCGTGTGGTTTTGTTGTTATTGGTGATAGTAGTGGTGGTGGTACT CCTGCTATTGCTGGTGAGGGTGTTGATTTTATTGCTGTTGTCTACATGCA TGGGAAACAAGAACACACAGTGCATTTTGATATATGTTTTCACCGGAAAT CCACGATACTTGTTTTCTCGTTGATGCCGGAAAAAAGGGCCATCGAAATC TTAGGAGGTGTGATGGGAAGCAAGAGCCCGGTGCACCCAAATGACCACGT GAACATGGGTCAGTCTTCCAACGACAGCTTTCCGACGGCCATGCATATCG CTGCTGTTTTCCAGGTTCGTTATCGT
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Coding sequence (CDS) from alignment at H-paniculata_contig841:5040..6015-

>mRNA_H-paniculata_contig841.16420.1 ID=mRNA_H-paniculata_contig841.16420.1|Name=mRNA_H-paniculata_contig841.16420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig841:5040..6015- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGGCGTGCTGAAGAAGTGTGCTGCGAAGTACAGCATGGGCAAGGGGAA
GCTTGACAAGGTTATAGGCGAGGCGATTATTGAGGCCGCTGAAGAGTTCG
GCGTGCTGAAGAAGTGTGCTGCGAAGTACAGCATGGGCAAGGGGAAGCTT
GACAAGGTTATAGGCGAGGCGATTATTGAGGCCGCTGAAGAGGTTGCGCA
AGGGAAACTCGACGACCACTTTCCGTTGGTCGTGTTTCAGACCGGCAGTG
GCACTCAGACGAACATGAACTGTAATGAGGTCATCGCGAACAGGTTGCGC
AAGGGAAACTCGACGACCACTTTCCGTTGGTCGTGTTTCAGACCGGCAGT
GGCACTCAGACGAACATGAACTGTAATGAGGTCATCGCGAACAGGGCCAT
CGAAATCTTAGGAGGTGTGATGGGAAGCAAGAGCCCGGTGCACCCAAATG
ACCACGTGAACATGGGTCAGTCTTCCAACGACAGCTTTCCGACGGCCATG
CATATCGCTGCTGTTTTCCAGGTTCGTTATCGTGGCCATCGAAATCTTAG
GAGGTGTGATGGGAAGCAAGAGCCCGGTGCACCCAAATGACCACGTGAAC
ATGGGTCAGTCTTCCAACGACAGCTTTCCGACGGCCATGCATATCGCTGC
TGTTTTCCAGGTTCGTTATCGT
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