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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Ubiquitin ligase, Det1/DDB1-complexing |
| Ec32 ortholog | Ec-09_002890.1 |
| Exons | 3 |
| Model size | 2031 |
| Cds size | 1353 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8408.16418.1 >prot_H-paniculata_contig8408.16418.1 ID=prot_H-paniculata_contig8408.16418.1|Name=mRNA_H-paniculata_contig8408.16418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=451bp
MSFLLNMPTVKEANFALLLAGEGGVRAQQQETRYLAFHDTRPPEGQEIGM
CHGHSVLGKNGPISQPCAQQRGLKRPACSSNGGHPVGVNNPWVSTPKRSR
DSSRAVLRHTQEVAASRTTIHTAQPRVYEGQGHGSSASGSTRDNGTSSLL
VGNNRRAKFPADSAEGRVEAFGQQQQSCGGREHLVTKESLVEKIVDHGMV
CVLGKQVAGDQRRKGKPSRVSEAGALTATTGERVTVPRIGEPQDLKPSHD
RIKLPILQSKRSRETIDQGSACQQDEQIADGKHGREGFEAFSREEASAVE
EPIVSSIRGGKARCRREPSTGTEHSAAVGGVGEKTVDRGKRSQKAENIVG
LRKEREGGAEGDMGGRMPMAEVPVIASARTEDAKCRQQPYRRSKRRVAEG
CSIEDSVTRAETCQNKVVISSQEQAVSLTSTQKIAPVMKKRMVTRSTARM
* back to topmRNA from alignment at H-paniculata_contig8408:1150..6543- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8408.16418.1 ID=mRNA_H-paniculata_contig8408.16418.1|Name=mRNA_H-paniculata_contig8408.16418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5394bp|location=Sequence derived from alignment at H-paniculata_contig8408:1150..6543- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTACCTTACCGCCGGAACAAAGTCAGTACAGACAGCACTTGACAGTA
GTACAAGGTCAAGTATTTAGAATGTTGTACTGCACTGAACCCCTCTACAC
CGTGCAGAGCAGCTCCCATATCTTCTCGCTGTAGTTTCCTGTGCCCTATG
TATGGCGGAAGTATTGGCTTCGCTCTACCCGTTTTTGCAAGACTCGCTCA
ACGTGTAAATAGCTCGATCTGTGATGTCGTTTCTTCTCAACATGCCCACT
GTCAAAGAGGCCAACTTCGCTCTGCTTCTCGCTGGCGAGGGTGGTGTACG
GGCACAGCAACAGGAGGTGCGTTGCGTGCGCGTGTATGTGCATGTACATG
TGTGTGATATTATCCGGCAATTACGCTTGTTTTCTCTTTTTTCAGTAGAT
GAACAGAAAGTGGAGCACCTCGAAATCTTGAGGCCGATTCCATCGAGTGG
TTCCTTCACTGTAACCACTGTGTTGACGGTTGGATATTTACGTGAGACCT
CAGAAAGTTGTATGATACAGCTTAGGTACACAGCAGCAATTCAAGACCGC
AGCTGCCCAAGACCTACCCGTGATTGGGGATTTCCATTATGCAGGTTGAA
ATCACAAGCTGGCACAACGTCAGCACAACGGGTGTATTAATTGTACGGGT
CCCCAGGGCTTGAAACTTGTGATTGGGTGCAAGCTGAGTTTTTCGTTATT
TCGCGAGTGCACAACACCGTGGCAGAGATAAGAATTGGAAGTCTCCAGCA
GGCGCCAGTGCACACAGAATCCTAACCTACCTAGACGAGACTCCAGTTCG
TTTAATTTACTGTAATTTGGTGGAAGGATATCATAATGTCTACCTCCAAC
GGTAAAAAAAAATAGGCCAACGGCGAAAGTGAGGTTTTCCTCTGTACTTT
TAGCCATTTCATTATATTAACCCATTCGGGACTGTCCCCTCCCCTGCTCG
GTGCAAACGGTTTGTTACCTTCCCAAAACAATGGAGAAAATTACGACCAA
ACAAACACCAGTGACAACCATTGTGCACAACCGAATATAGTGGGAGCTAG
AACGGGGCAGGCGGGGAAATGATCACCCGACCAATCATGAGCCTCGCTTG
GGATGATGAAGGTGTCCAATGCAATAGTTGCATCCGAAACGACTGAATCC
GAATCGTCAGTCCGTACATTTTACACTATAGTTTCAGTTCCCCAGCAAAA
TTGGGTTTTTTAAAAAGTGTCGTCAGCGTTTATTTATGCGTCATATATCA
AGACATAAACAGCAGTGAGCTTCAATAGAAGCAGACTGCACACATTGGAG
ATACTCGTGGGACACAAAGCTCAACAAGGTCTGCCCGCTCCGGGACTCGT
AAGTATCTAACAATGACGCTAACGCTATTGAAGCTCAGCTCACAGTGGAC
AGTCAGTTTAACAAAATACAGTTCCCCTATATTATTACTACGGACAGTAC
AGACAGCAACAGGATGTAAGATGGTTTTGAGGCATGACAGCGTCGAAATG
TACATAGTACAAAATACAGCACTGACAATTGGAATACCTCTGCCTTGCAA
GTGAGGTAGGCGGTTCGATGTACGCTCAGAACTACGAGCAGACCACGCAC
TACAGTAGATTGTTCTATTTAGTGTTTTAGGTTTTTTTACTTATAGGCGC
GTCCTGGGTGTTTTGATTGAGTGAAAAAAAAAGTGATACTAGGCAAATAA
CAGTAACATGCATGAAAATTTACCGTCATCTTTCCAACCTGAATGCACTT
AGATTGACACCGTTTGGACTGTCGCTACGCGCAGGCATACTATGAAGCAT
CAAGTCGTATGGCACATGCTAAAATGCCTAATGCGTCAACCGTGGACTAC
GATTTCGAGTGTTTCGCCAGCGTTTCAGGTCTGAGAAATCACCTACTTGA
CTTCGTAAAATATAAAGAAAGCTGAAAAATCCAAAATCCGAACCACCCAT
GCCTTGGTCTCAAATGGTCAGTTCCAAATCGTCGGTTTATATATAGCCAG
TTTCACATGGGTTAAGGTACCGGGCAGAGCCACTGCGAGGCGCCCGACGT
ACGCGGGCTTTCGTATCTGTACCCATCCTGTTTTCGTTCACGACTTTTGA
TATTAGCCCTAGATCACCCCCATCACCATTTCCGCGCGGAAAGAAGCGGT
AATACGTTCTTCTGCCGCAAAGCTACAATCATGTGGGTTGGCAACAAGTC
CTGAAGATATAGTTCATCCTTTCTAAATAGTTTGGGCTTCTCTGTTTTTG
CCTGCAGTAGTAGTAGGAGTATCATTTGCTGGGGCGGATGTAGACCTTAC
CCTGGCTAACGGGTGCACTTTTCCTGGCGTCTTGAATCCACCGATTTTAA
ACCAACAGTGCATGGGCGTTTCCTTTTGACATCCCACCGAAGAACCGAAA
GCACCCATTCATCAAATTGACTCCGTATGATCTAACGACGTTAGGAAATA
GTGTGTGCGCATTGAAATTTCTTCATAATCGTTGGCTGCCAGAGCACGAA
AAAAGACTCTCCGTCATGCCTACACTTATGTAGGATCGACCTCTACAAGC
GAACCGACAGGTCATCAGACTCGCCGAGTGTTTGGTACTGGCGCTGCTGT
TGACTTGCAACGACTGCAACTGTTTGGTGATATGTCCCTGCCGCCTCGGG
AACATTCCTTGGGTCGGAAAAATACTCAAGTTATCAGGTTTACTTGGAAG
CCAAAACAAGGTCTATTCGCGCCAACTAACGCACAGATCCATGATACTTG
GCATCATGTGTATACTGCGGCGACAGGTGAGATTAACCGCCGAAACTGCG
TTTGTGCCTCCTAGATAGGGTGTGTTGCCCCTCGCATTCACATTCCTTCC
ACAATCAATCTCATGATAAACCACAAATATTCACCCTGAATCTTCATATT
TCCACTATCTAGATGTAGTATTAATTGGCAAATATGTTGTCTTACGTAAA
TACTACGTCGGCTGTCAACAAGTTAAGCGAAATATTCTGCTTTATCCTCA
ACGCGAAATAGGGATTCCAAGCTTGTATGCACGCCCTCTGATGGTCAACG
TCCGCACCCCTGTTACCTGATCTCTGATTCCCTGCCCACTAACGACAGAC
GCGGTACTTGGCGTTTCACGACACTCGCCCCCCCGAAGGCCAAGGTATGT
CGCTGCATTGAAAATCAAACCCCGCGCTCATTAAAGTAGGCGTTCCTCTA
TAACACACCATGGTACCGACCAGCAATGAACATAGCTGAGGAGTTGGAGC
AGCTCGTTGATTTTCACTTTTTTTGTGCAGACCAAAATAATTGGGTTCGG
TAGCTACTGTTGTCAAAGGGAAACATGTTCTTTATTGCTGCCATATGATC
ATTTAGAGCCTCTTCGGTGCGAGGTGAAGGCTAAATGATGCTAAATTGGT
TCTGTACCCTCTTAAGTGTGTTGTTCTGAATTTGCTCTTCAATTGTTTGT
CCCTGGAAACTGGAAGGATTACATCCGGTTTTCAGTATAACATACTCACA
ACGTGCTTCCCCCCAAGAGCGCAGTCTAGAAGACACGGTTTTTGGCAATC
TTGGGATTTTCTTTATCGCTAAGAGGGTCCTAATTTAAGTTTGCCACGAC
TCGTTTACGATATCATCAGTCCGCGTTCACTCTGGTGTCCGTGTCATCGT
GGTCATCGTCGTCACAATCATCGACGCTTTCATTGAAATCTACCGTTCGT
TTGTGATACTTGCTCCCTTCGCCAGAGATAGGTATGTGCCATGGACACTC
CGTGCTGGGCAAGAATGGGCCAATATCGCAACCGTGTGCTCAACAGAGAG
GACTGAAACGTCCGGCGTGTTCTTCTAACGGCGGGCATCCTGTTGGTGTT
AATAATCCCTGGGTGTCGACCCCCAAGCGCAGTCGCGACAGCTCGCGTGC
GGTTCTACGCCACACCCAAGAAGTCGCCGCAAGCAGGACTACGATCCACA
CAGCGCAGCCTAGAGTGTATGAAGGGCAAGGCCATGGTAGCAGCGCTAGC
GGTAGCACACGCGACAATGGAACGAGTTCTCTCTTGGTGGGTAACAATCG
ACGCGCCAAGTTCCCAGCTGACTCGGCGGAAGGCCGGGTAGAGGCTTTTG
GTCAGCAGCAACAAAGTTGTGGCGGCCGGGAACATCTTGTGACAAAAGAG
AGTTTGGTCGAGAAAATTGTCGATCATGGGATGGTATGTGTGCTGGGCAA
GCAAGTAGCGGGTGATCAACGAAGAAAGGGTAAACCAAGCCGTGTTTCCG
AGGCCGGAGCTCTTACCGCAACAACAGGAGAGCGAGTTACTGTACCTAGG
ATCGGTGAACCCCAAGACCTGAAACCGTCTCACGACAGAATCAAACTTCC
CATCTTGCAATCGAAGAGGAGCAGGGAAACTATCGACCAAGGCTCGGCAT
GTCAACAGGATGAACAGATTGCAGACGGGAAACATGGAAGAGAGGGATTT
GAAGCCTTTTCACGGGAGGAAGCATCGGCAGTCGAAGAACCGATCGTCTC
TAGTATTAGGGGTGGTAAGGCGAGATGCCGACGGGAGCCTTCCACCGGAA
CCGAACACTCCGCCGCAGTAGGAGGTGTGGGTGAGAAAACCGTCGATCGG
GGTAAGAGATCCCAGAAAGCCGAAAATATTGTAGGTCTTCGAAAAGAAAG
GGAGGGGGGTGCCGAGGGAGATATGGGGGGAAGGATGCCGATGGCGGAAG
TGCCGGTCATTGCTAGCGCCAGGACTGAAGATGCGAAATGCCGGCAACAA
CCTTACCGGCGAAGCAAACGTCGCGTAGCAGAAGGTTGCTCAATCGAGGA
TAGCGTCACACGGGCAGAGACATGTCAGAACAAGGTCGTAATTAGTAGCC
AGGAGCAGGCGGTTTCCTTGACCTCTACTCAGAAAATCGCCCCGGTCATG
AAAAAGCGGATGGTTACCAGATCCACGGCTCGTATGTAAGGATTGCTATT
TTGTCAGGATAGGGATAGGGTTCAGAATACCGCTACTGTACCCTTGCTTG
TTGACGTCATGTATTCTAAAAAGCTCATTTGTGACGCACGATGCGGCGCC
AATGTAATTTTGCCTATGACGTGGTACCGTGGTGCCGTGGTGATGTGATA
AGACCAACCTGAGTCAGTTCAAAAATAGCCACCTACGTGGGCCCCAAAGC
GACCACCCGTATTGACGGGTTGTCTTCAAGGTGCGATTATATAGTTGACT
GCTATGCTGCGAGGATGTTGGATAGCTTCTAATATTCACATGGTTGCGAT
GATGCACAAGCCTTTGAGCGAAGGATGGCGGTATATAAAACACAGAGCTA
CACTCTGAGAGGGAAGTACAACACCTGGAGATGATAATAGATGATGACAT
AATAGGACAGGCAAATGCAGTCGGTTTCTTGGTACTTCCTTGAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig8408:1150..6543- >mRNA_H-paniculata_contig8408.16418.1 ID=mRNA_H-paniculata_contig8408.16418.1|Name=mRNA_H-paniculata_contig8408.16418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2706bp|location=Sequence derived from alignment at H-paniculata_contig8408:1150..6543- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTTTCTTCTCAACATGCCCACTGTCAAAGAGGCCAACTTCGCTCT
GCTTCTCGCTGGCGAGGGTGGTGTACGGGCACAGCAACAGGAGATGTCGT
TTCTTCTCAACATGCCCACTGTCAAAGAGGCCAACTTCGCTCTGCTTCTC
GCTGGCGAGGGTGGTGTACGGGCACAGCAACAGGAGACGCGGTACTTGGC
GTTTCACGACACTCGCCCCCCCGAAGGCCAAGACGCGGTACTTGGCGTTT
CACGACACTCGCCCCCCCGAAGGCCAAGAGATAGGTATGTGCCATGGACA
CTCCGTGCTGGGCAAGAATGGGCCAATATCGCAACCGTGTGCTCAACAGA
GAGGACTGAAACGTCCGGCGTGTTCTTCTAACGGCGGGCATCCTGTTGGT
GTTAATAATCCCTGGGTGTCGACCCCCAAGCGCAGTCGCGACAGCTCGCG
TGCGGTTCTACGCCACACCCAAGAAGTCGCCGCAAGCAGGACTACGATCC
ACACAGCGCAGCCTAGAGTGTATGAAGGGCAAGGCCATGGTAGCAGCGCT
AGCGGTAGCACACGCGACAATGGAACGAGTTCTCTCTTGGTGGGTAACAA
TCGACGCGCCAAGTTCCCAGCTGACTCGGCGGAAGGCCGGGTAGAGGCTT
TTGGTCAGCAGCAACAAAGTTGTGGCGGCCGGGAACATCTTGTGACAAAA
GAGAGTTTGGTCGAGAAAATTGTCGATCATGGGATGGTATGTGTGCTGGG
CAAGCAAGTAGCGGGTGATCAACGAAGAAAGGGTAAACCAAGCCGTGTTT
CCGAGGCCGGAGCTCTTACCGCAACAACAGGAGAGCGAGTTACTGTACCT
AGGATCGGTGAACCCCAAGACCTGAAACCGTCTCACGACAGAATCAAACT
TCCCATCTTGCAATCGAAGAGGAGCAGGGAAACTATCGACCAAGGCTCGG
CATGTCAACAGGATGAACAGATTGCAGACGGGAAACATGGAAGAGAGGGA
TTTGAAGCCTTTTCACGGGAGGAAGCATCGGCAGTCGAAGAACCGATCGT
CTCTAGTATTAGGGGTGGTAAGGCGAGATGCCGACGGGAGCCTTCCACCG
GAACCGAACACTCCGCCGCAGTAGGAGGTGTGGGTGAGAAAACCGTCGAT
CGGGGTAAGAGATCCCAGAAAGCCGAAAATATTGTAGGTCTTCGAAAAGA
AAGGGAGGGGGGTGCCGAGGGAGATATGGGGGGAAGGATGCCGATGGCGG
AAGTGCCGGTCATTGCTAGCGCCAGGACTGAAGATGCGAAATGCCGGCAA
CAACCTTACCGGCGAAGCAAACGTCGCGTAGCAGAAGGTTGCTCAATCGA
GGATAGCGTCACACGGGCAGAGACATGTCAGAACAAGGTCGTAATTAGTA
GCCAGGAGCAGGCGGTTTCCTTGACCTCTACTCAGAAAATCGCCCCGGTC
ATGAAAAAGCGGATGGTTACCAGATCCACGGCTCGTATGTAAAGATAGGT
ATGTGCCATGGACACTCCGTGCTGGGCAAGAATGGGCCAATATCGCAACC
GTGTGCTCAACAGAGAGGACTGAAACGTCCGGCGTGTTCTTCTAACGGCG
GGCATCCTGTTGGTGTTAATAATCCCTGGGTGTCGACCCCCAAGCGCAGT
CGCGACAGCTCGCGTGCGGTTCTACGCCACACCCAAGAAGTCGCCGCAAG
CAGGACTACGATCCACACAGCGCAGCCTAGAGTGTATGAAGGGCAAGGCC
ATGGTAGCAGCGCTAGCGGTAGCACACGCGACAATGGAACGAGTTCTCTC
TTGGTGGGTAACAATCGACGCGCCAAGTTCCCAGCTGACTCGGCGGAAGG
CCGGGTAGAGGCTTTTGGTCAGCAGCAACAAAGTTGTGGCGGCCGGGAAC
ATCTTGTGACAAAAGAGAGTTTGGTCGAGAAAATTGTCGATCATGGGATG
GTATGTGTGCTGGGCAAGCAAGTAGCGGGTGATCAACGAAGAAAGGGTAA
ACCAAGCCGTGTTTCCGAGGCCGGAGCTCTTACCGCAACAACAGGAGAGC
GAGTTACTGTACCTAGGATCGGTGAACCCCAAGACCTGAAACCGTCTCAC
GACAGAATCAAACTTCCCATCTTGCAATCGAAGAGGAGCAGGGAAACTAT
CGACCAAGGCTCGGCATGTCAACAGGATGAACAGATTGCAGACGGGAAAC
ATGGAAGAGAGGGATTTGAAGCCTTTTCACGGGAGGAAGCATCGGCAGTC
GAAGAACCGATCGTCTCTAGTATTAGGGGTGGTAAGGCGAGATGCCGACG
GGAGCCTTCCACCGGAACCGAACACTCCGCCGCAGTAGGAGGTGTGGGTG
AGAAAACCGTCGATCGGGGTAAGAGATCCCAGAAAGCCGAAAATATTGTA
GGTCTTCGAAAAGAAAGGGAGGGGGGTGCCGAGGGAGATATGGGGGGAAG
GATGCCGATGGCGGAAGTGCCGGTCATTGCTAGCGCCAGGACTGAAGATG
CGAAATGCCGGCAACAACCTTACCGGCGAAGCAAACGTCGCGTAGCAGAA
GGTTGCTCAATCGAGGATAGCGTCACACGGGCAGAGACATGTCAGAACAA
GGTCGTAATTAGTAGCCAGGAGCAGGCGGTTTCCTTGACCTCTACTCAGA
AAATCGCCCCGGTCATGAAAAAGCGGATGGTTACCAGATCCACGGCTCGT
ATGTAA back to top
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