mRNA_H-paniculata_contig840.16410.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig840.16410.1
Unique NamemRNA_H-paniculata_contig840.16410.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig840.16410.1 vs. uniprot
Match: A0A6H5JTX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTX4_9PHAE)

HSP 1 Score: 607 bits (1564), Expect = 2.360e-211
Identity = 326/520 (62.69%), Postives = 379/520 (72.88%), Query Frame = 1
Query:  112 SSWLPSITRNSLTFAAASFSSSVLCTLFALYSTPVFTSVYQISDRHFYISHVVFAIWNAFNDPAFAWLIDNTTASGASRRLPAIKYGGPLWCLSFLIPWWPWSSEPGSWLVGVHFCFSICIFDSFLTYVLLVHCALLADLTTDNTSRNNYNNVGTLLGVAXXXXXAASYHLYDEENMDPFRLFCLCAAGLSSIGFWYTGTRLDVSRLEGLNVQVRFR-PAVDTTQQENVNLS--LMGRENESRTSSSTWGAGMRTRSP-----PTGST---------AAETAID-----PRKPQLLKASNGGDEGRRELSFWGFAKQLSTHKNFWLYVSMNFVENFHNLFDQSFFVFLDTKMLRQTLPPGVHGVLTALCLYLPKI---------MTQILTPVANHFGVYSVMLYAAAFKVAAGCTTFAFGVQAWPVWAVLFLGNRLAATVWSFYNLSFSDVIDEDTLRNRRPESMSVSVHGVQALFVKPAQSLAPILGMKFLPDGALKTDLVSMSDSQVGVYNTASFYII 1578
            SSWLPS+T N+L F AASF+SSVLCTLF+LY TPVFTSVY+ S  HFY SHVVFAIWNA NDPAFAWLIDNTTASG  RRLPAIKYGGPLWCL+FLIPWWPWSSEPGS+LVG+HFC SIC+FDSFLTYVLLVHCALLADLTTDNT RNNYNNVG+LLGVA     A SY LYD ++M PFR FCL AA  S +GFW+TGTRLDV RL+    +V  + P +++T   ++  +  L G    +  ++     GMR+R+P     P GS          AA   +      P  P+   A   G  G RELSFWGF KQLS+H NFWLYV  +   NF+ LFDQSFFVFLDTK+    +P G HGVLTALCLY PK+         MTQ+LTPVA+ +G Y +++ AA FK+ AG   FA G QAWP+W +LFLGNRLAAT W FYNLSFSDVIDEDTLRN+RPESMSVSVHG+QALFVKPAQSLAP++GM FLP GALKTDLV M+  Q      A+F ++
Sbjct:    6 SSWLPSLTTNALAFGAASFASSVLCTLFSLYVTPVFTSVYKASAVHFYASHVVFAIWNAINDPAFAWLIDNTTASGGDRRLPAIKYGGPLWCLAFLIPWWPWSSEPGSFLVGLHFCVSICMFDSFLTYVLLVHCALLADLTTDNTLRNNYNNVGSLLGVAGGAAGAVSYFLYDGKDMAPFRSFCLGAAAASCLGFWWTGTRLDVGRLDTFRREVPEQDPLLESTPPASITHTAPLDGATKPNSRNNQGAAVGMRSRTPTRDSGPAGSXXXXXXXXXXAAGRGVSLMGNAPLSPKTT-AGGAGARGGRELSFWGFTKQLSSHGNFWLYVPSS---NFNALFDQSFFVFLDTKLFEMVVPRGPHGVLTALCLYAPKVRNTALTRILMTQVLTPVADRYGTYKLIMGAALFKLVAGVLMFACGRQAWPMWTLLFLGNRLAATAWGFYNLSFSDVIDEDTLRNKRPESMSVSVHGLQALFVKPAQSLAPMVGMAFLPAGALKTDLVDMTMRQAEGVQAAAFTLM 521          
BLAST of mRNA_H-paniculata_contig840.16410.1 vs. uniprot
Match: A0A7S4JC94_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4JC94_GUITH)

HSP 1 Score: 300 bits (769), Expect = 2.540e-92
Identity = 170/474 (35.86%), Postives = 253/474 (53.38%), Query Frame = 1
Query:  130 ITRNSLTFAAASFSSSVLCTLFALYSTPVFTSVYQISDRHFYISHVVFAIWNAFNDPAFAWLIDNTTASGASRRLPAIKYGGPLWCLSFLIPWWPWSSEPGSWLVGVHFCFSICIFDSFLTYVLLVHCALLADLTTDNTSRNNYNNVGTLLGVAXXXXXAASYHLYDEENMDPFRLFCLCAAGLSSIGFWYTGTRLDVSRLEGLNVQVRFRPAVDTTQQENVNLSLMGRENESRTSSSTWGAGMRTRSPPTGSTAAETAIDPRKPQLLKASNGGDEGRRELSFWG-----------FAKQLSTHKNFWLYVSMNFVENFHNLFDQSFFVFLDTKMLRQTLPPGVHGVLTALCLYLPKIMTQILTPVANHFGVYSVMLYAAAFKVAAGCTTFAFGVQAWPVWAVLFLGNRLAATVWSFYNLSFSDVIDEDTLRNRRPESMSVSVHGVQALFVKPAQSLAPILGMKFLPDGALKTD 1518
            +++ S+ FA   F+SS++ +LF  +S  +FT V ++    FY  HVV+A+WNA NDP F W+ID   A  + RRLP +KYGGP+W LSF++ W+PWSS+  SW   +HF  S+ ++D FLTYV++  CALLADL  D+  R   N   +  G+        +Y+L+DE+N+DPFR FC   + LS++ ++ +G+ L V                                                   P+  ++  ++  P +  L      G++ R  L   G           FA+QL   KNF LYV MN++ NF+    +SFF+FLD  ++   LPP  H   TAL LYLPKI  Q+LTP+A+ +G++ +M       + +       G+  +  W  L++   L  T W FY+L  +DVIDED ++ RR ES++ SVHGVQ+L VKP+QSLAP++G+  L    L  D
Sbjct:    6 VSKQSVAFALGGFASSIVGSLFGPFSVILFTRVVRLQPSSFYAVHVVYAVWNAINDPLFGWMIDQQ-ADRSHRRLPVLKYGGPMWSLSFMVTWYPWSSDGNSWAAVLHFAMSMMMYDGFLTYVMITKCALLADLCVDSRERLKLNWFSSWFGLVGSCIGTTAYYLWDEDNLDPFRRFCWGCSLLSAMAWYASGSMLVV---------------------------------------------------PSSCSSDPSSHSPSQAMLTDVRTEGEKSRWGLQRLGGCRFGLQRWMEFARQLLQQKNFVLYVCMNWMMNFNVTLSKSFFIFLDKLLMTSLLPPPAHAAFTALVLYLPKIGVQLLTPLASRWGLHLLMWRVTISMLLSCGLALLVGISHYMTWCSLYVLQALLLTSWGFYDLIMADVIDEDAVKWRRRESVATSVHGVQSLLVKPSQSLAPVVGVFILNSFGLSKD 427          
BLAST of mRNA_H-paniculata_contig840.16410.1 vs. uniprot
Match: A0A7S2RVJ6_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RVJ6_9STRA)

HSP 1 Score: 263 bits (673), Expect = 1.190e-78
Identity = 155/462 (33.55%), Postives = 233/462 (50.43%), Query Frame = 1
Query:  136 RNSLTFAAASFSSSVLCTLFALYSTPVFTSVYQISDRHFYISHVVFAIWNAFNDPAFAWLIDNTTASGASRRLPAIKYGGPLWCLSFLIPWWPWSSEPGSWLVGVHFCFSICIFDSFLTYVLLVHCALLADLTTDNTSRNNYNNVGTLLGVAXXXXXAASYHLYDEENMDPFRLFCLCAAGLSSIGFWYTGTRLDVSRLEGLNVQVRFRPAVDTTQQENVNLSLMGRENESRTSSSTWGAGMRTRSPPTGSTAAETAIDPRKPQLLKASNGGDEGRRELSFWG---FAKQLSTHKNFWLYVSMNFVENFHNLFDQSFFVFLDTKMLRQTLPPGVHGVLTALCLYLPKIMTQILTPVANHFGVYSVMLYAAAFKVAAGCTTFAFGVQAWPVWAVLFLGNRLAATVWSFYNLSFSDVIDEDTLRNRRPESMSVSVHGVQALFVKPAQSLAPILGMKFLPDGALK 1512
            R  + ++   F+ S+L TL  L+S  +FT+V +I+  +     V +AIWNA NDP F W+ID++ A  +SRRLP +KYGGP+WC++F+  ++PWS +  S+L   H+ FSI  +D FLTYVL+V CAL ADL  D+  R   N       +A       +Y+ +DEEN+ PFR        LS++  WY    L V        +    PAV+ +  E                                                              FW    FA QL   ++F LYV MN++ NF+     SFFVFLD  ++   +P   + ++T+LCLYLPK   Q+LTPVA+  G+Y  +LY     +  G  +   GV+ +  W ++ +  ++  + W FY+L  +D+IDED++ + R ES++ SVHGVQ+L VKP+ S A + G+  L    L+
Sbjct:   14 RQEIAYSLGGFAQSILGTLHGLFSVILFTNVVKINPSYLIGGQVAYAIWNALNDPVFGWMIDHS-ADTSSRRLPVLKYGGPMWCMTFMGTFYPWSYDGQSYLAAAHYLFSIFCYDGFLTYVLIVKCALFADLCVDSEDRTRLNLYNAWFSLAGSSMATIAYYYWDEENLTPFRTLAFFFCSLSAVA-WYASGSLLVMPEHNKYSEPHVLPAVEKSYVE-------------------------------------------------------------EFWEWFKFAGQLLRQRSFVLYVGMNWMMNFNVSLSGSFFVFLDKYLMVHLMPHRYYILITSLCLYLPKFGIQMLTPVADRLGLYRTILYCTYGLICVGSLSVVAGVEHYFFWGMMVVVQKVLFSSWGFYDLVMADIIDEDSVLHNRKESVATSVHGVQSLLVKPSSSFAAMFGVYLLSSNGLQ 412          
BLAST of mRNA_H-paniculata_contig840.16410.1 vs. uniprot
Match: UPI001BB1641A (transmembrane protein 180-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1641A)

HSP 1 Score: 206 bits (523), Expect = 3.630e-56
Identity = 138/459 (30.07%), Postives = 219/459 (47.71%), Query Frame = 1
Query:  130 ITRNSLTFAAASFSSSVLCTLFALYSTPVFTSVYQISDRHFYISHVVFAIWNAFNDPAFAWLIDNTTASGASRRLPAIKYGGPLWCLSFLIPWWPWSS-EPGSWLVGVHFCFSICIFDSFLTYVLLVHCALLADLTTDNTSRNNYNNVGTLLGVAXXXXXAASYHLYDE-ENMDPFRLFCLCAAGLSSIGFWYTGTRLDVSRLEGLNVQVRFRPAVDTTQQENVNLSLMGRENESRTSSSTWGAGMRTRSPPTGSTAAETAIDPRKPQLLKASNGGDEGRRELSFWGFAKQLSTHKNFWLYVSMNFVENFHNLFDQSFFVFLDTKMLRQT-LPPGVHGVLTALCLYLPKIMTQILTPVANHFGVYSVMLYAAAFKVAAGCTTFAFGVQAWPVWAVLFLGNR-LAATVWSFYNLSFSDVIDEDTLRNRRPESMSVSVHGVQALFVKPAQSLAPILGMKFL 1494
            + RN+  ++  S ++ ++ ++F  Y   +FT  Y IS+  F+++ VV+ IWNA NDP FA+  DN+       R  AI YG PL+ + FL+PW+PW + E   W++GVH   S+C +D+  T+VLL HCAL A+++T +  R      G +  +        S  + D   N   F+L+C+  A LS     YTG           NV+ RF           +  S +G                           A   +   K  L   S    +G   LS+   AKQ+  ++NF ++V +NF + FH  +  +F      +++ +T L   +   L      LP+ +  +L+      G Y +++++  FK+ +    F  G Q   +    F+ +R L   ++SF+NL  SD+IDED LRN R   +S SV G  ALF KPA SLAP++ +  L
Sbjct:   59 VDRNAFAYSMTSLAAVLMNSIFRFYYVRLFTDYYHISESWFHVAQVVYMIWNAVNDPLFAYWQDNSNIKAFRSRRHAIMYGAPLFVVCFLLPWFPWKTYEANEWIIGVHLTVSLCCYDALFTFVLLSHCALFAEISTRHEDRVRLTRYGQVASIVGSTSVLFSQFVSDNLNNFHAFQLWCVFVAFLSWAAMHYTGR----------NVRTRFE----------LQPSGLG---------------------------ASGHLSMEKKSLSPTSQ---DGSLSLSY-SQAKQIIFNRNFLIFVFINFCQIFHMDYGANFLAVFVAQLIPETDLSQFIRKALFGTTFILPQFLVLLLSIFVTRCGYYRIIVWSFYFKICSAILMFLIGAQHTHIMVFFFIMDRSLPDAIFSFFNLCLSDIIDEDQLRNERSSPLSSSVFGYNALFTKPASSLAPMMVVNIL 466          
BLAST of mRNA_H-paniculata_contig840.16410.1 vs. uniprot
Match: UPI001BB1786D (transmembrane protein 180-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1786D)

HSP 1 Score: 205 bits (522), Expect = 4.950e-56
Identity = 137/459 (29.85%), Postives = 221/459 (48.15%), Query Frame = 1
Query:  130 ITRNSLTFAAASFSSSVLCTLFALYSTPVFTSVYQISDRHFYISHVVFAIWNAFNDPAFAWLIDNTTASGASRRLPAIKYGGPLWCLSFLIPWWPWSS-EPGSWLVGVHFCFSICIFDSFLTYVLLVHCALLADLTTDNTSRNNYNNVGTLLGVAXXXXXAASYHLYDE-ENMDPFRLFCLCAAGLSSIGFWYTGTRLDVSRLEGLNVQVRFRPAVDTTQQENVNLSLMGRENESRTSSSTWGAGMRTRSPPTGSTAAETAIDPRKPQLLKASNGGDEGRRELSFWGFAKQLSTHKNFWLYVSMNFVENFHNLFDQSFFVFLDTKMLRQT-LPPGVHGVLTALCLYLPKIMTQILTPVANHFGVYSVMLYAAAFKVAAGCTTFAFGVQAWPVWAVLFLGNR-LAATVWSFYNLSFSDVIDEDTLRNRRPESMSVSVHGVQALFVKPAQSLAPILGMKFL 1494
            + RN+  ++  S ++ ++ ++F  Y   +FT  Y IS+  F ++ VV+ IWNA NDP FA+  DN+       R  AI YG PL+ + FL+PW+PW + E   W++GVH   S+C +D+  T+VLL H AL A+++T +  R      G +  +        S  + D   N   F+++C+  A LS     YTG+          NV+ RF                                       P+G   A   +   K  L  +S    +G   LS+   AKQ+  ++NF ++V +NF + FH  +  +F     T+++ +T L   +   L      LP+ +  +L+     +G Y +++++  FK+ +    F  G Q   +    F+ +R L   ++SF+NL  SD+IDED LRN+R   +S SV G  ALF KPA SLAP++ +  L
Sbjct:   59 VDRNAFAYSMTSLAAVLMNSIFRFYYVRLFTDYYHISESWFNVAQVVYMIWNAVNDPLFAYWQDNSNIKAFRSRRHAIMYGAPLFAICFLLPWFPWKTYEANEWIIGVHLTVSLCCYDALFTFVLLSHGALFAEISTRHEDRVRLTRYGQVASIVGSTSVLFSQFVSDNLNNFHAFQVWCVFVAFLSWAAMHYTGS----------NVRTRFELQ------------------------------------PSGQ-GASGHLSMEKKSLSPSSQ---DGSLSLSY-SQAKQIIFNRNFLIFVFINFCQIFHMNYGANFLAVFVTQLIPETDLSQFIRKALFGTTFILPQFLVLLLSIFVTRYGYYRIIVWSFYFKICSAIFMFLIGAQHTHIMVFFFIMDRSLPDAIFSFFNLCLSDIIDEDQLRNKRSSPLSSSVFGYNALFTKPASSLAPMMVVNIL 466          
BLAST of mRNA_H-paniculata_contig840.16410.1 vs. uniprot
Match: UPI00106A20F1 (transmembrane protein 180-like isoform X1 n=5 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A20F1)

HSP 1 Score: 203 bits (517), Expect = 7.050e-56
Identity = 126/456 (27.63%), Postives = 213/456 (46.71%), Query Frame = 1
Query:  130 ITRNSLTFAAASFSSSVLCTLFALYSTPVFTSVYQISDRHFYISHVVFAIWNAFNDPAFAWLIDNTTASGASRRLPAIKYGGPLWCLSFLIPWWPWSSEPGSWLVGVHFCFSICIFDSFLTYVLLVHCALLADLT---TDNTSRNNYNNVGTLLGVAXXXXXAASYHLYDEENMDPFRLFCLCAAGLSSIGFWYTGTRLDVSRLEGLNVQVRFRPAVDTTQQENVNLSLMGRENESRTSSSTWGAGMRTRSPPTGSTAAETAIDPRKPQLLKASNGGDE--GRRELSFWGFAKQLSTHKNFWLYVSMNFVENFHNLFDQSFFVFLDTKMLRQTLPPGVHGVLTALCLYLPKIMTQILTPVANHFGVYSVMLYAAAFKVAAGCTTFAFGVQAWPVWAVLF-LGNRLAATVWSFYNLSFSDVIDEDTLRNRRPESMSVSVHGVQALFVKPAQSLAPIL 1479
            + +N+L +AAA+F SS++ ++F  +    F ++Y+I+   F  + +++ IWNA NDP F +L D++       R  A+  G PL+ LSFL PW+P  SE   W+VG+H  FS+C FDS  T+VLL HCAL  +++    D      Y+ + +++G +      A Y    ++N   F++ C+  A +S +   Y G  + V +        ++ P +D                                                          GD+  G   +S+W    Q+   KNF  +V MNF++ FH  +  +FF+    +++   LPP V  +L      +P+I+  +  P+   +G Y ++L +   K+      +  G     + AV F L   + +  +S +N+  SD+ID+D  +++R   +S  V G  ALF KPAQS AP+L
Sbjct:    2 VNKNALAYAAATFGSSMINSIFGFFYVKTFLNIYKINGWWFNTAQIIYMIWNAVNDPLFGYLQDSSNIKIFRVRSLAVLVGAPLYALSFLTPWFPLISERPEWMVGLHLLFSLCFFDSLFTFVLLAHCALFTEISPSANDRAQLLKYSQIASIMGSSAVF--VADYVSNSQKNFVNFQILCVIVAIISCVAMCYAGLNVKVDK--------KYEPVIDEK--------------------------------------------------------GDKKNGPTSVSWWSLTFQICKQKNFVCFVIMNFLQIFHTTYSSNFFLIFAEELMGSQLPPFVRSLLAGSTFMIPQIIGLLANPLIVKYGSYHIILSSFYIKLVMAVLLYLSGPNQILILAVFFVLDKSIPSATFSQFNMPLSDIIDDDLAKHKRSSPISSLVFGTNALFTKPAQSFAPML 391          
BLAST of mRNA_H-paniculata_contig840.16410.1 vs. uniprot
Match: A0A7M7HE62_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7HE62_STRPU)

HSP 1 Score: 203 bits (517), Expect = 8.270e-56
Identity = 138/483 (28.57%), Postives = 237/483 (49.07%), Query Frame = 1
Query:  130 ITRNSLTFAAASFSSSVLCTLFALYSTPVFTSVYQISDRHFYISHVVFAIWNAFNDPAFAWLIDNTTASGASRRLPAIKYGGPLWCLSFLIPWWPWSS-EPGSWLVGVHFCFSICIFDSFLTYVLLVHCALLADLTTDNTSR---NNYNNVGTLLGVAXXXXXAASYHLYDEENMDPFRLFCLCAAGLSSIGFWYTGTRLDVSRLEGLNVQVRFRPAVDTTQQENVNLSLMGRENESRTSSSTWGAGMRTRSPPTGSTAAETAIDPRKPQLLKASNGGDEGRRELSFWGFAKQLSTHKNFWLYVSMNFVENFHNLFDQSFFVFLDTKMLRQT-LPPGVHGVLTALCLYLPKIMTQILTPVANHFGVYSVMLYAAAFKVAAGCTTFAFGVQAWPVWAVLFLGNR-LAATVWSFYNLSFSDVIDEDTLRNRRPESMSVSVHGVQALFVKPAQSLAPILGMKFLPDGALKTDLVSMSDSQVGVYNT 1560
            + RN+  ++  S ++ ++ ++F  Y   +FT  Y IS+  F+++ V++ IWNA NDP FA+  DN+       R  AI YG PL+ + FL+PW+PW + E   W++GVH   S+C +D+  T+VLL HCAL A++++ +  R     Y+ V +++G        + +   D  N   F+L+C+  A LS    +YTG           NV+ RF     T  + +  LS+   EN+S                                      +   +G   LSF   AKQ+  ++NF ++V +NF + FH  F  +F     T+++ +  L       +       P+++   L+   + +G Y +++++  FK+ +    F  G Q   +  + F+ +R L   ++SF+NL  SD+IDED L+++R   +S SV G  ALF KPA SLAP++ +  L     K     + D ++ +++T
Sbjct:    5 VDRNAFAYSMTSLAAVLMNSIFRFYYVRLFTDYYHISETWFHMAQVIYMIWNAVNDPLFAYWQDNSNIKAFRSRRHAILYGAPLFVICFLLPWFPWKTYEASEWMIGVHLIVSLCCYDALFTFVLLSHCALYAEISSRHEDRVRLTRYSQVASIVGSTSVLL--SQFVSNDLNNFHAFQLWCVFVAFLSWAAMYYTGR----------NVRTRFE-LQPTALEGSGKLSM---ENKS------------------------------------LGHSKQDGSLSLSFKQ-AKQIICNRNFLIFVFINFCQIFHMDFGANFLAIFVTQLIPEADLSQFFRKAMFGTTFIFPQLLVLFLSIFVSRYGSYRIIIWSFYFKICSAFLMFLIGAQHTHIMVLFFVMDRSLPEAIFSFFNLCLSDIIDEDQLKSQRASPLSSSVFGYNALFTKPASSLAPMMVVSILNKYGYK----ELQDEKLSLHDT 430          
BLAST of mRNA_H-paniculata_contig840.16410.1 vs. uniprot
Match: UPI0018D7A832 (transmembrane protein 180-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D7A832)

HSP 1 Score: 204 bits (519), Expect = 1.090e-55
Identity = 146/458 (31.88%), Postives = 217/458 (47.38%), Query Frame = 1
Query:  139 NSLTFAAASFSSSVLCTLFALYSTPVFTSVYQISDRHFYISHVVFAIWNAFNDPAFAWLIDNTTASGASRRLPAIKYGGPLWCLSFLIPWWPWSSE-PGSWLVGVHFCFSICIFDSFLTYVLLVHCALLADLTTDNTSR---NNYNNVGTLLGVAXXXXXAASYHLYDEENMDPFRLFCLCAAGLSSIGFWYTGTRLDVSRLEGLNVQVRFRPAVDTTQQENVNLSLMGRENESRTSSSTWGAGMRTRSPPTGSTAAETAIDPRKPQLLKASNGGDEGRRELSFWGFAKQLSTHKNFWLYVSMNFVENFHNLFDQSFF-VFLDTKMLRQTLPPGVHGVLTALCLYLPKIMTQILTPVANHFGVYSVMLYAAAFKVAAGCTTFAFGVQAWPVWAVLFLGNRLAA-TVWSFYNLSFSDVIDEDTLRNRRPESMSVSVHGVQALFVKPAQSLAPILGMKFL 1494
            NS  FA  +F + +   +F  Y   +F + Y IS+  F I+ VV+ +WNA NDP FA+  DN+       R  AI YG PL+ + FL+PW+PW +    SWLVG+H   S+C +D+  T+VLL HCA+ A++++ +  R     Y  + ++LG        A +     EN   F++FCL  A +S +  +YTG           NV   +          N +LSL   +  SR+SS                                      EG +    W   KQ+   +NF  +V+MNF + FH +++ +F  +F D  +    LPP    +L      +P+++  IL PVA   G Y V+L +   K+A+G T F  G     + AV FL +      + SF+NL  SD+ID D  +  R   +S SV G  ALF K AQS AP+L +  L
Sbjct:   51 NSFAFALTAFGNKLTSAVFQFYYVKLFLNHYHISESWFSIAQVVYLVWNAVNDPLFAYWQDNSKIRIFRSRRLAILYGAPLFSICFLLPWFPWGNYGANSWLVGIHLMVSLCAYDTLFTFVLLAHCAMYAEISSKHEDRLRLTKYCQIASVLGATSVM--GAEFFSSSLENFRAFQMFCLVLALISWLAMYYTGR----------NVVTMYDNVA------NDDLSLKMNDTASRSSS--------------------------------------EGPKA---WVQFKQIVCERNFLFFVTMNFCQIFHIIYEANFLAIFADQLIPSTDLPPLARRMLYGSAFVIPQVLVLILGPVAGRMGYYKVILLSFIIKIASGATMFMIGQTHTWMLAVFFLIDLCVPDAIGSFFNLPVSDIIDYDKDKYNRRTPISSSVFGYNALFTKAAQSCAPMLILNIL 449          
BLAST of mRNA_H-paniculata_contig840.16410.1 vs. uniprot
Match: UPI000779F96B (transmembrane protein 180-like n=3 Tax=Acropora TaxID=6127 RepID=UPI000779F96B)

HSP 1 Score: 202 bits (515), Expect = 1.540e-55
Identity = 136/462 (29.44%), Postives = 225/462 (48.70%), Query Frame = 1
Query:  130 ITRNSLTFAAASFSSSVLCTLFALYSTPVFTSVYQISDRHFYISHVVFAIWNAFNDPAFAWLIDNTTASGASRRLPAIKYGGPLWCLSFLIPWWPWS--SEPGSWLVGVHFCFSICIFDSFLTYVLLVHCALLADLTTDNTSRNN---YNNVGTLLGVAXXXXXAASYHLYDEENMDPFRLFCLCAAGLSSIGFWYTGTRLDVSRLEGLNVQVRFRPAVDTTQQENVNLSLMGRENESRTSSSTWGAGMRTRSPPTGSTAAETAIDPRKPQLLKASNGGDEGRRELSFWGFAKQLSTHKNFWLYVSMNFVENFHNLFDQSFF-VFLDTKMLRQTLPPGVHGVLTALCLYLPKIMTQILTPVANHFGVYSVMLYAAAFKVAAGCTTFAFGVQ-AWPVWAVLFLGNRLAATVWSFYNLSFSDVIDEDTLRNRRPESMSVSVHGVQALFVKPAQSLAPILGMKFL 1494
            I +N+L ++A + +++++ ++F  Y    F +VY+IS+  F ++ +VF IWNA NDP F +  D++T     +R  AI YG PL+ +SFL PW+PW+     G W+VG+H   S+C++D   T+VLL  C+L A+++T    R     Y  V ++LG       ++ Y   ++ N   F+  C+  A LS +   YTG  ++V+                              E  S TSSS                                 + G   + E+  +   KQ+ T ++F  +V+MNF + FH  F  +FF +F++  +    +P  ++ +LT     LP+I+    +P+   FG Y V+L++   KV+     F  G+   W ++  L + N L    +S +NLS SD+ID+D  +  R   +S  + G  ALF KPAQSLAP++ +  L
Sbjct:    6 INKNALAYSATTLAATMMNSVFNFYYVKTFLNVYKISNYWFNVAQIVFLIWNAINDPLFGYFQDSSTWMVLRKRRLAIFYGAPLFAISFLSPWFPWTWFGFSGDWVVGLHLMTSLCLYDGLFTFVLLAQCSLFAEISTQQEERQTILKYAQVASILGSTALFLTSSVYK-NEDRNFHSFQAVCVVIAILSWLLMRYTGMNIEVAM-----------------------------EASSTTSSSV--------------------------------HDGKSLKDEVPLFTLIKQILTQRSFVCFVAMNFFQVFHTTFCSNFFLIFVEHLIGSDAIPAILYSLLTGSVFILPRILVLATSPLLAKFGSYKVILWSFYVKVSLPALVFLAGLNNIWILYIFLIVDNCLPDATFSLFNLSVSDIIDDDMEKYHRNAPISSMIFGTNALFTKPAQSLAPMMVVHIL 405          
BLAST of mRNA_H-paniculata_contig840.16410.1 vs. uniprot
Match: A0A369SLA8_9METZ (Transmembrane protein 180 n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369SLA8_9METZ)

HSP 1 Score: 201 bits (512), Expect = 3.480e-55
Identity = 131/462 (28.35%), Postives = 230/462 (49.78%), Query Frame = 1
Query:  127 SITRNSLTFAAASFSSSVLCTLFALYSTPVFTSVYQISDRHFYISHVVFAIWNAFNDPAFAWLIDNTTASGASRRLPAIKYGGPLWCLSFLIPWWPWSSEPGS-WLVGVHFCFSICIFDSFLTYVLLVHCALLADLTTDNTSRNN---YNNVGTLLGVAXXXXXAASYHLYDEENMDPFRLFCLCAAGLSSIGFWYTGTRLDVSRLEGLNVQVRFRPAVDTTQQENVNLSLMGRENESRTSSSTWGAGMRTRSPPTGSTAAETAIDPRKPQLLKASNGGDEGRRELSFWGFAKQLSTHKNFWLYVSMNFVENFHNLFDQSFFVFLDTKMLRQTLPPGVHGVLTALCLYLPKIMTQILTPVANHFGVYSVMLYAAAFKVAAGCTTFAFGVQAWPVWAVLF--LGNRLAATVWSFYNLSFSDVIDEDTLRNRRPESMSVSVHGVQALFVKPAQSLAPILGMKFL 1494
            SIT++++ +A+ + ++S++ ++F  Y   +F + Y+I++  FY + +++ +WNA NDP F +L D++  + + RR  AI YG P++ LSFLIPW PW++   S W+VG+H   S+C +D   TYVLL  CAL A++ T  + R     Y+ + +++G +     A  +     +N+  FR F +C   ++SI ++                      A+  T +  +N+S      ++ +S+S                            +L  S   D    +++ +   KQ++T+K F L+V MNF++ FHN    +FF      ++  +L P    ++      LP+I+  + +P+   FG Y  ++ +   K A     F  G     ++ + F  L   L    +S +NLS SD+ID+D  + +R   +S  + G  ALF KPAQSLAP+  + FL
Sbjct:    2 SITKSAIAYASTTLAASMMNSIFQFYYIKLFLNGYRINNTWFYRAQLIYLVWNAINDPLFGYLQDSSKVAFSRRRRTAILYGAPIFALSFLIPWIPWTAFGDSDWVVGMHLITSLCFYDGMFTYVLLAQCALFAEIATKESDRQTVLKYSQIASIIGSS-----AVLFTELISQNLKYFRYFQICCVVIASISYF----------------------AMTYTARYAINIS------DAESSNS----------------------------VLIDSGEDDNPLSDITLYTLFKQITTNKQFALFVLMNFLQIFHNTIGSNFFSIFADNLIGSSLLPQARSIMAGSAFVLPQILVLLFSPLLARFGSYRCIMVSFFVKFALALAMFLSGPSN-MIFLIFFMVLDRSLPEATFSLFNLSVSDIIDDDRAKYKRRAPISSMIFGTNALFTKPAQSLAPMFVVSFL 401          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig840.16410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTX4_9PHAE2.360e-21162.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4JC94_GUITH2.540e-9235.86Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
A0A7S2RVJ6_9STRA1.190e-7833.55Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
UPI001BB1641A3.630e-5630.07transmembrane protein 180-like n=1 Tax=Lytechinus ... [more]
UPI001BB1786D4.950e-5629.85transmembrane protein 180-like n=1 Tax=Lytechinus ... [more]
UPI00106A20F17.050e-5627.63transmembrane protein 180-like isoform X1 n=5 Tax=... [more]
A0A7M7HE62_STRPU8.270e-5628.57Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
UPI0018D7A8321.090e-5531.88transmembrane protein 180-like n=1 Tax=Patiria min... [more]
UPI000779F96B1.540e-5529.44transmembrane protein 180-like n=3 Tax=Acropora Ta... [more]
A0A369SLA8_9METZ3.480e-5528.35Transmembrane protein 180 n=1 Tax=Trichoplax sp. H... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig840contigH-paniculata_contig840:570..9166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score642.5
Seed ortholog evalue1.7e-181
Seed eggNOG ortholog2880.D7FLP1
Preferred nameMFSD13B
Hectar predicted targeting categoryother localisation
EggNOG free text desc.MFS/sugar transport protein
EggNOG OGs2CMK7@1,2QQN2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons10
Model size1580
Cds size1578
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig840.16410.1prot_H-paniculata_contig840.16410.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig840 570..9166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931055.8410826-CDS-H-paniculata_contig840:569..7791622931055.8410826-CDS-H-paniculata_contig840:569..779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 570..779 -
1691481569.698657-CDS-H-paniculata_contig840:569..7791691481569.698657-CDS-H-paniculata_contig840:569..779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 570..779 -
1622931055.8605423-CDS-H-paniculata_contig840:1981..21821622931055.8605423-CDS-H-paniculata_contig840:1981..2182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 1982..2182 -
1691481569.7163763-CDS-H-paniculata_contig840:1981..21821691481569.7163763-CDS-H-paniculata_contig840:1981..2182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 1982..2182 -
1622931055.885707-CDS-H-paniculata_contig840:2406..25511622931055.885707-CDS-H-paniculata_contig840:2406..2551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 2407..2551 -
1691481569.728529-CDS-H-paniculata_contig840:2406..25511691481569.728529-CDS-H-paniculata_contig840:2406..2551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 2407..2551 -
1622931055.9137344-CDS-H-paniculata_contig840:3320..35791622931055.9137344-CDS-H-paniculata_contig840:3320..3579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 3321..3579 -
1691481569.737046-CDS-H-paniculata_contig840:3320..35791691481569.737046-CDS-H-paniculata_contig840:3320..3579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 3321..3579 -
1622931055.932932-CDS-H-paniculata_contig840:4089..42861622931055.932932-CDS-H-paniculata_contig840:4089..4286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 4090..4286 -
1691481569.7488747-CDS-H-paniculata_contig840:4089..42861691481569.7488747-CDS-H-paniculata_contig840:4089..4286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 4090..4286 -
1622931055.9520743-CDS-H-paniculata_contig840:4656..47271622931055.9520743-CDS-H-paniculata_contig840:4656..4727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 4657..4727 -
1691481569.7584102-CDS-H-paniculata_contig840:4656..47271691481569.7584102-CDS-H-paniculata_contig840:4656..4727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 4657..4727 -
1622931055.9661586-CDS-H-paniculata_contig840:5318..54631622931055.9661586-CDS-H-paniculata_contig840:5318..5463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 5319..5463 -
1691481569.775684-CDS-H-paniculata_contig840:5318..54631691481569.775684-CDS-H-paniculata_contig840:5318..5463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 5319..5463 -
1622931055.978743-CDS-H-paniculata_contig840:6696..68121622931055.978743-CDS-H-paniculata_contig840:6696..6812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 6697..6812 -
1691481569.7881494-CDS-H-paniculata_contig840:6696..68121691481569.7881494-CDS-H-paniculata_contig840:6696..6812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 6697..6812 -
1622931055.9984107-CDS-H-paniculata_contig840:7310..75071622931055.9984107-CDS-H-paniculata_contig840:7310..7507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 7311..7507 -
1691481569.7989047-CDS-H-paniculata_contig840:7310..75071691481569.7989047-CDS-H-paniculata_contig840:7310..7507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 7311..7507 -
1622931056.0174453-CDS-H-paniculata_contig840:9129..91661622931056.0174453-CDS-H-paniculata_contig840:9129..9166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 9130..9166 -
1691481569.8084886-CDS-H-paniculata_contig840:9129..91661691481569.8084886-CDS-H-paniculata_contig840:9129..9166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig840 9130..9166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig840.16410.1

>prot_H-paniculata_contig840.16410.1 ID=prot_H-paniculata_contig840.16410.1|Name=mRNA_H-paniculata_contig840.16410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=526bp
GIFGGHRSKAGVGWTAGGEFLQQCTRNMKQQLKRSSWSSWLPSITRNSLT
FAAASFSSSVLCTLFALYSTPVFTSVYQISDRHFYISHVVFAIWNAFNDP
AFAWLIDNTTASGASRRLPAIKYGGPLWCLSFLIPWWPWSSEPGSWLVGV
HFCFSICIFDSFLTYVLLVHCALLADLTTDNTSRNNYNNVGTLLGVAGGA
AGAASYHLYDEENMDPFRLFCLCAAGLSSIGFWYTGTRLDVSRLEGLNVQ
VRFRPAVDTTQQENVNLSLMGRENESRTSSSTWGAGMRTRSPPTGSTAAE
TAIDPRKPQLLKASNGGDEGRRELSFWGFAKQLSTHKNFWLYVSMNFVEN
FHNLFDQSFFVFLDTKMLRQTLPPGVHGVLTALCLYLPKIMTQILTPVAN
HFGVYSVMLYAAAFKVAAGCTTFAFGVQAWPVWAVLFLGNRLAATVWSFY
NLSFSDVIDEDTLRNRRPESMSVSVHGVQALFVKPAQSLAPILGMKFLPD
GALKTDLVSMSDSQVGVYNTASFYII
back to top

mRNA from alignment at H-paniculata_contig840:570..9166-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig840.16410.1 ID=mRNA_H-paniculata_contig840.16410.1|Name=mRNA_H-paniculata_contig840.16410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8597bp|location=Sequence derived from alignment at H-paniculata_contig840:570..9166- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAATATTCGGAGGTCACCGTTCAAAAGCAGGAGTTGGTAAGTGGTACAG ACAAGTTTTGAGATTAAGCTTTGGCCGCGTGCGGTGAGTGGAGGAAAAGC TGTTCATCCCGACCTGCTCCGTGTTCCCTAGTTGTGGGTGGCCTTGAAAT GCTTCGGGAGCCCTATTAGTGCAGGCAGCAAGTTGTACAAATTATTTAGT GCATATGTTCCAACTATCTGGCTACATCAGTGCATAGCCGACAGGAGGCA GCAATCTTCGAAATTCTAGAGGAGAGAAAACGCGTATAGTACTGGTATCC TGATTTTTGTTCTGCCAAATATGTACGGTGGGGGTATTTAGTATTTACAT GTATCCCGAAATCCCTTTTCTCATATATTCGTTTGGTAGTTTAGATGCAT ACGTTACTCACATGCAATTCGTGCTTTGTCTTCGATCCAAAGGCAGCAGC TCGCCGCACGACTCACAACTCCACAACGTCCTTGATGTGACGAAGATTAT CTTTTTGAAGTCGGTTCAGAACAAACTAAAAAAATGTTCCAAAACAACTT TACCTTAGTGTACAACCGAGAGGATCTAAGTTATCGACCCTTCCGGCGCC AATCTAAATTATTCTGAACATTTGGAGTTGACAATCCAGGGGTCTTGTGG GAGAGGCTGGCATACGAAAAGGGGGAGTTTGCGCGGGATCGGTGCGTAGA CGGACCACATATGGACCGTTGTGGCGGTAAATATGCTTTACTCGTTATCA GGTTTCGCTGAGCCGCGACAACGCCGAACCGGTGAGGGTTGCCCATCATC ACTATGACTAGGCTGCTGTGCTCTGATGGAGGGTATGTGTGCCACACAAA GTTGCACACTAGGACATTTAATCAAAAACAACTTGACTATCACAGGGCGC TGTTCCGACACTCGCAGACCAAATAAATGCCGAAAGATTTGTGGTACAGC TGAACTGCGCCTGTGTCATTGTTGGGAACATCGACTGCGGCCACAGTGGC AGGTTGCTCAGGCACATCATGCGCTGCCATCGCTCTCGGCTACGCTGTGG ATGCTGATACTGCCCGTCTTTTGTGCCCACTAAACACCACCAAACCATAA GGACATCGTCGTCGTGAAAAAGCACAGCAGGCCGATAATGAAATGGCGAA GTGAGACTCCACGTTTTTCCCGGACCCCATAAACGGCTGGAGTTTTCGTG TAGGTATTCTGTGACCTCAAAACAACTTGACTAATTTACAGGAGAGGACA CGTTTTTGATTGGCCGTTGTTGGGTCAGCAAACGTGCATGATTGAGCTGA GGCCAGGTATTTTGTGTACAAATACACTACCATACTCAAGCACTACGAGG TCGGACCTCCCACGTTTTCGTGGCGGTTTCGCGGCGGGACAGTTAGGTTC CTCCAATCTTCTTTTTCGATCTCCCGCGGTACAAGGGCTAACTTCGTACC TCTCAAATAATTGTGACATCAATAGAGATACCTTTATGTACGACGTTGAA TGAAGCGGCGAAGTCACCGTGTTAAATAGATACCAATAACTATGCATACG TTGGGAGGTTTTCGCGCACATGCCTGTGCGTCTCTCCCTATATTCGCAGC AATACAGTTACATAGTAACTTGCTGTGTTGTGTCATGATATCGTACCCCC TTGCGCCAGGTTGGACCGCGGGAGGAGAGTTCCTGCAGCAGTGCACAAGA AACATGAAGCAGCAGTTAAAACGTTCGTCATGGTCGTCTTGGTTACCGTC GATCACGAGGAACAGTCTCACGTTCGCCGCCGCAAGCTTCTCGTCGTCTG TACTATGCACCCTGTTCGCCTTGTACTCCACTCCTGTCTTCACCAGCGTT TACCAGGTACGAATAAGCACCGCCTTGGTGACCTGCAGGAAGAACACATC ACGCAGTCACTACCGTTCGACATTAAATAAGCTCTCTTCTTTACCTGCCT CGAAAGTACGCTAACCTTACCGTGGTGCACAGTGGCCGAAACACCGATCA TGCTGTTATCTACCTAACCTTGTTGCGGCTGAACGCGGCGAGAGTTGAGT GTGTTGCAATAATAAATCTTCGCGTTGCCATTGCTAGACATCATGGTGCC TGTCGCGGTAGGAGGATTGGCATACATGGATTGACACCTGTTTCCTGACC CACTTTCTATCTCACACAACAGATTGACACCCCCCTTTGACTTTTTCAAC ATCCATCGTGCCGAGTAACCGTTCGCCACCGGGCCGACGGCGATGTGCTG TGTGGCAGCCGCGTGACAGAGCTCCTTGCTCACCACCATCTAGCGCGGAG GACTTTATGCCGCACCGTTTCGATACTTGTTCGCTCTGCCGCACATGGGC ACAGATCAGTGATCGCCATTTCTACATTAGTCACGTAGTGTTCGCCATTT GGAACGCGTTCAACGACCCTGCGTTCGCCTGGCTTATCGACAATACCACT GCTTCCGGGGCGAGCCGACGGTGAGAAACAACGTACTTTGTAAGCACGAT CTGAATCCCCAATCTTATGTGCGGAGATCGGATGTATGGAAAAGAAGCGA GAGCATGACCAGCGAGTCGTTTCAGCTTCGAGGACATGTTGGCCATGTTG AAACTAGAATAAATCAAGAATGTTCTCCAAGAAATTGGTGGACAAAATAT GCTATATTTGTGTCTGGACTTACACGACAACGCCTGTATGCATATACTGG GAAGTGCAGCCACGCTGCCAGCTATATAAGTAGTGTCTTAATTTAGCACA GCCCACAGTCTGATTGTGTAAAATACAGGCAACCGGTAGAGAGAGAGGTT GTGCTGTATTGCCGTCAGCCGTTGTGATATAAATGTCTGTACCGTGTCTT CACAACACGGCAGTAGAATAGCAGTCGACACCTTTGTGGAACCCATCACT CCATACCCTTCATCAAAGCACATCCTCAGCCTATGCCACCTTGATGATGA GTCATCTTTTTCGGTTGGCGGTTGTTGCGGTTCAGCGAAATTTGTAACAA GAACAACACATTTACCACCATGATGGTCCGTTTGTGGTCTATCTCATACA TTGTATTGTTCATTTTCCAAATTTCACCGACCTGGCGCAGACCCCCCTTT CGTATGGCACCCCCCCGTCAAGAGCTCTGGACTGCTATCTCCACATGTTC GGGATAATTTGGTGTGGCGCCAGAAGGTTTGAGGAAACTTTTCTGTTTCT TCCAAGAAAATCGTCGTTTCGAAAACCTGACTTCATTTTTCTGGCAAAAT GTTGTAAAAATGTTTGATTTTTTTGTGTTAAAGGTCATTGAGGCACTGTT GGTAGGAAAGAAAAACATGAAAAAAGCATTTACCTTACTTTTGTTGCGTT TGATGCCATGGCAACAAACAGAGAGCGTGACGTTTCGGATACTTACGGGT AGATGGCACGTTGATGGTATTCCGCGAGACATGTCTCCGGTCCATAACTC GCTCCCTCTACTCTTTTCGTCCGCGTATGCATCCGTCCCTGGGCCTACCG CATTAAAAAACCAGATGATGAAATGCAACCCACTCGGGCATCGGCATGTC CGGCACGTTTTGTCGTGAAAGAATCAAAACGTTGGAATTGTACCGAAGCC CAAAATCTTGGCGATCTTGTCATGAAACACCACCCGGACACCATCTGGAC GAATACGTGCATCATCAGTCGCTTTCCCCTGTCTGATGGGGTTGACTCGG CAGGCTGCCTGCCATCAAATACGGAGGGCCTTTGTGGTGTCTATCGTTTT TAATCCCCTGGTGGCCATGGTCGAGTGAGCCGGGCTCCTGGCTGGTCGGG GTGCACTTTTGCTTCTCCATCTGCATATTCGACAGCTTTCTCACGTATGT AAGTCTGCAGTAATGCTCGGGGTAGGATTCGAGTTTGGGTATCCTCACGC TCCACTTCTCCAGTAGTTTCGCAGCGGTGAAGCAATTTTGTCCGCAGTGT GATGGATATCTGTAGGGAGAAGCTTTATTCATACGAAGATATCTAAGGTT TCGTGGAGGAGGTTCGGGGGTGATCGGCCCCCACACCTTTTGATTCTCCA CCTGCGTGTGCGACGGCGCATTTTCACCCATGCGCTGTAGCCTTATCGTG AAAACTTTCTGGTTTGTGGTGCTGCAATGAAGTGCGGTATGCGTGGTATA ATTAATAGGTGTGTGTACATGAAGGCTTAGCTCTACCCCAGACCTGGTTT CCGCCTAAAAATTAGACGAGTCTTGTGGAGTTCCCAGGCCACAAAAGCTG TGCGAAATAACAAAAGCGAAGGTTTGCGTACGCATAAAGTTTGGTTCCCA CCTGATGAGGAAGGTCGCATGAACAACATCTAACGCTCAGTTACCGCCCG AATTTCCTACGGTTACTTTTTATCGTTCTGTAACTGTGATCCCCTGTGTT CTTCGTCGCCGCCGCCACCACGACCGTCACCCTGAGCAGGTCCTGTTGGT TCACTGCGCGCTCTTGGCCGACCTGACAACGGACAACACCTCGAGAAACA ACTACAACAAGTGAGGGAGACTGGGCACGACCTCGAGCTTGGATACCGTC ATCTGATGAGCTGCATTTCAGTATACGCGTATGATATCCCTTGTGTTAGC CCGAAGGTGACGGGATTCATTTTGGAGCAGGTGTTCAAAGTTGTACTTTT ATCGCTCCCGTATTTATATTTTTTCGCTGATAAGGGTTTACAACTGAAAT TTAATGTGAGCTGCATTACCTCAACATGGGTACGTGATGTTTTTTTATGA GCGTTATAGATGTTCTTACTGTGGCAAGTGGGGTGGATTTATGAATGAGG CTCCCGGTGAGTGAATTGGGTATATTATTCCTGTCACCCCCCCCCCTCCC GTTTTGTCGATTGGTTGTAATGACATTCAGTGTGGGGACGTTGCTGGGGG TTGCGGGTGGGGCAGCGGGAGCGGCGTCGTATCACCTCTACGACGAAGAA AATATGGACCCGTTTCGTCTGTTCTGCCTGTGTGCGGCGGGGTTATCGTC CATTGGGTTTTGGTACACAGGTACAAGGCTGGACGTTAGCCGACTCGAGG GCTTGAACGTGCAGGTGCGTTTCCGTCGTCGCTGCGCAGAAAGTCTGGAG TAGTGGGGGGTGAGAATCTTGTGAAAATCCCCCTCCCGCCACGAGACATT AGAAGTGCTGTCATTGAGAGTATTTACGATCTACGTATCGGAGATTGATA AGCGTTGGAGCGTAAGTTTCGTTTTGTGCGCAGTAGGAATGTATACAGTG CGGGCAAACGGGACACGACTAAGTGACATCGTATTGTGATGAACGATTAA ATTTAGTAACAAATACACGTAGATGAGACACGCAGTCGGAGGTTTGCATT CACGAGTGGATGCACCCTTGACGTAAGAAACTGAGCTAGAATCCTCCCCT CCCAATCCTCCCCCCCCGATGATTCCGACAACCCTGGCTTGCGTCGGGAC AAGTTGACCCAAAATCAAGATCCAAATCCAAACACGAAACTCGATACCCG AAACCAAAAGAAGAAAAACGACAAAGATGTCCCTTCCCTCTCTCGCTCCC GCTCCTCTCCCTCCCTGGACGCAGGGAACGGGTGAAGCTGCTGTCGACAC AACTCAACAAGAGAACGTAAATTTATCACTGATGGGTCGAGAAAACGAAT CTCGCACTTCTTCCTCCACGTGGGGCGCCGGCATGCGCACGCGCAGTCCA CCAACAGGATCAACGGCAGCCGAGACTGCCATCGACCCGAGAAAACCGCA GTTACTTAAAGCTTCCAATGGTGGTGACGAGGGGCGGCGCGAGTTATCGT TTTGGGGCTTCGCGAAACAGCTTTCTACGCACAAGAATTTTTGGCTGTGA GTTGGTTAGTTTAGGGATACAAGTAGCGGCATTGTAAGGTTTCAAGGTCT GCCTTTTTCTTTCAAGGGGGAAAGGTCGTGGGGGCCATCTTCTGCACGAA GCGTAAGTGTTTCTGGCACCAACGGGCTTTCTGCTTTATGCGTACATCTT ATTGGAGTATTATCGATATTATTAGCAAGACGTTGATCGGCTGGAGTGTT TTTTGTGTTGAGTTGTTCAAGTAAGCGTATTTTTTTTAATGTGAAACCAT CAATGTAATTGAAGCTAGTTTAGAGTCATGACCTACGTGCGCAAGGGTGG TGCAAGGGTATAAAGGGCATACTAAATAGGCCCAACCGCCTAACCCACAT GCTCCTACACGCGTGTTTACCGTTACAAACTGAAACATCTGTTGGTTGAA AAAGCGCCCGTTTTTCCCGTGCGATGCATACTCTCGTCTACCATCTGTAG TAATCTACATACAACGATGACGACTGGTTGTGTAGTAGCCAAGCAGCAAT GGCACATTCCATGCAATCATCATCACACCAGACTAAGACATGAACAATGA AACTCTGCATCGGTGAACAGTCCTCCGACGTTGATTTATTGCTACAAAAC CAAGGGAAAATTATTTGCCTCTTGACGTGAGCACAGCGATGCACGCCCTC TGTCCCTAATGCCCTCCACTTTTTATCCGCCGGCTGTCCCCGCACCCCGC CCAGCAATTCGATTACCTTTTCGCTTTGTCCGTTTGTGCGCGATCGTGCT TGCGTGTTCTGAAAGGTACGTGTCAATGAATTTCGTGGAGAATTTTCATA ATCTTTTCGACCAATCGTTCTTCGTGTTTCTCGACACCAAGATGCTGAGG CAGACGTTGCCTCCAGGTGTCCACGGCGTGCTCACGGCCCTATGTTTATA CTTGCCAAAGGTTGGTGTTGGCGTGACAGGTGGGGGGAAGGGGTGACTGC TTCACTGGGGTAGCTTGATGATCGTCAAGGTGGTGGTGTTGGTGGTTGGG GTGATGATCATTATGATGATGATGATGATGAGGATGATGTGTTTCGAGAG AGTCACTGACATAAAAGTGTTCTGTCCCTCCCTCCGCCCCCCACCCTGTT GTGTTTTGAACAAACCACTCTTTTCTTGAAATAGATCATGACACAAATAC TAACTCCGGTGGCCAACCATTTCGGCGTGTATTCAGTCATGCTTTACGCG GCAGCCTTCAAGGTGGCTGCAGGTTGCACAACATTCGCCTTTGGAGTGCA AGCATGGCCGGTGTGGGCCGTACTCTTCTTGGGCAACCGTCTGGCGGCAA CTGTCTGGAGTTTCTACAATCTGTCGTTTTCCGACGTGAGTCCCGAAACG CCGCTAAATTATTACATTATCGTATTTATCGGGTTTTTTTTTTTAATATT GTTGGCTTCACTGTTTAGTACAGTGGAAGTTCCATCGCTTCAAAGTACTT TTTTTTTCGAAGTACGTGTTCAACTCTGTTCTCGATTAGCTTCTAAGAAA CGAATTTCATAGACATTGGCGTGATTGTGTTTGTGTGAGCGCAGCGAGCC ATCATGTTTGGGATGAGACGATATGAAAGGCCCTTATGTATATATACACG CTGATTAGGGTGATGGTTTGTTCCGAGCTATTGACTGCGATATGTCCACT TGTGATCCGTCTTCGTGGTTGAACTGTTTTCTGTGTTACTGGATAATTAC AAAGGCTGCTCCAGTAGGAAAGCCCCAAAAATGTGTTGCGCAGCATCGGT TACAACCTTCTTGAATTACGTGAGCGCTTTCACTCTTTGATTTTGCCCAA ATCCGGCCGCGAGAGGGTAGCGTAGCGAGAAAATGTGCTACGGGTGATGG TTTATTATTCCGTAGTTTAAAGTTATACCGTACACCGTATAACGTGTATC GCCCCGAGTGAAGACAGTTTTTCCAAGCCCCGTTGTCTCTCGAGATTCGG TTCTTTCCGCTGTCGAAGGAGCACGTCTATCTGAACGATGTGTCCTGACG AGATCTTTTCCAATGGAACAGTGCTGTATGCGCGTGCAAGGGAATGCATT CGTTGTGACGTATCATCATCGTTTTTCAGCATTATGTTCAAGCGATTGCG GCAAGTGGGCTTGTACTAGAGTTCACTTTGAATGTAGTGTTTTTTTTATG AAAATTTTGGTTGGATGAAGATTAATTAATTGCTCGTGATTCACAGAGTG GTAGTTCTGATTTCCAGGACCTTGAACTGAAAGGTGTTTTTTCGAGAAAT TTTGATTATTTAAAAAAATCTAATATAGGAAACTCTATATTTACTACGCT AAGGAGGTGATGGTAGCTGTCTTAGATTTTTTTCAATACTGTATTCAAGT ACTGTTTGCAGAGGAATCTTCAAGGACATTGCGCGTACATGCGAGCGCAG CGAGCCCTTGTGCGTGGGTGATAGATCTGCGATTAGTGACTACGAGGACA AAAATAAGTGTAAAACTGCACGAGAGATACTTAAGCTGTGGCTGTGCTTC CAAAGATTTGTTTTAACGTCGAATGCTATATCCACAGGTTATCGATGAGG ACACTCTGCGCAACAGGCGGCCGGAGAGTATGTCAGTGTCCGTGCATGGC GTACAGGCGCTGTTCGTCAAGCCGGCGCAAAGTCTCGCCCCCATCCTGGG CATGAAGTTCCTGCCCGACGGCGCTTTGAAAACGGACCTAGTCTCCATGT CCGATAGTCAGGTAGGTGTATATAATACAGCATCATTTTATATAATT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig840:570..9166-

>mRNA_H-paniculata_contig840.16410.1 ID=mRNA_H-paniculata_contig840.16410.1|Name=mRNA_H-paniculata_contig840.16410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3156bp|location=Sequence derived from alignment at H-paniculata_contig840:570..9166- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAATATTCGGAGGTCACCGTTCAAAAGCAGGAGTTGGGAATATTCGGAG
GTCACCGTTCAAAAGCAGGAGTTGGTTGGACCGCGGGAGGAGAGTTCCTG
CAGCAGTGCACAAGAAACATGAAGCAGCAGTTAAAACGTTCGTCATGGTC
GTCTTGGTTACCGTCGATCACGAGGAACAGTCTCACGTTCGCCGCCGCAA
GCTTCTCGTCGTCTGTACTATGCACCCTGTTCGCCTTGTACTCCACTCCT
GTCTTCACCAGCGTTTACCAGGTTGGACCGCGGGAGGAGAGTTCCTGCAG
CAGTGCACAAGAAACATGAAGCAGCAGTTAAAACGTTCGTCATGGTCGTC
TTGGTTACCGTCGATCACGAGGAACAGTCTCACGTTCGCCGCCGCAAGCT
TCTCGTCGTCTGTACTATGCACCCTGTTCGCCTTGTACTCCACTCCTGTC
TTCACCAGCGTTTACCAGATCAGTGATCGCCATTTCTACATTAGTCACGT
AGTGTTCGCCATTTGGAACGCGTTCAACGACCCTGCGTTCGCCTGGCTTA
TCGACAATACCACTGCTTCCGGGGCGAGCCGACGATCAGTGATCGCCATT
TCTACATTAGTCACGTAGTGTTCGCCATTTGGAACGCGTTCAACGACCCT
GCGTTCGCCTGGCTTATCGACAATACCACTGCTTCCGGGGCGAGCCGACG
GCTGCCTGCCATCAAATACGGAGGGCCTTTGTGGTGTCTATCGTTTTTAA
TCCCCTGGTGGCCATGGTCGAGTGAGCCGGGCTCCTGGCTGGTCGGGGTG
CACTTTTGCTTCTCCATCTGCATATTCGACAGCTTTCTCACGTATGCTGC
CTGCCATCAAATACGGAGGGCCTTTGTGGTGTCTATCGTTTTTAATCCCC
TGGTGGCCATGGTCGAGTGAGCCGGGCTCCTGGCTGGTCGGGGTGCACTT
TTGCTTCTCCATCTGCATATTCGACAGCTTTCTCACGTATGTCCTGTTGG
TTCACTGCGCGCTCTTGGCCGACCTGACAACGGACAACACCTCGAGAAAC
AACTACAACAAGTCCTGTTGGTTCACTGCGCGCTCTTGGCCGACCTGACA
ACGGACAACACCTCGAGAAACAACTACAACAATGTGGGGACGTTGCTGGG
GGTTGCGGGTGGGGCAGCGGGAGCGGCGTCGTATCACCTCTACGACGAAG
AAAATATGGACCCGTTTCGTCTGTTCTGCCTGTGTGCGGCGGGGTTATCG
TCCATTGGGTTTTGGTACACAGGTACAAGGCTGGACGTTAGCCGACTCGA
GGGCTTGAACGTGCAGGTGCGTTTCCGTCTGTGGGGACGTTGCTGGGGGT
TGCGGGTGGGGCAGCGGGAGCGGCGTCGTATCACCTCTACGACGAAGAAA
ATATGGACCCGTTTCGTCTGTTCTGCCTGTGTGCGGCGGGGTTATCGTCC
ATTGGGTTTTGGTACACAGGTACAAGGCTGGACGTTAGCCGACTCGAGGG
CTTGAACGTGCAGGTGCGTTTCCGTCCTGCTGTCGACACAACTCAACAAG
AGAACGTAAATTTATCACTGATGGGTCGAGAAAACGAATCTCGCACTTCT
TCCTCCACGTGGGGCGCCGGCATGCGCACGCGCAGTCCACCAACAGGATC
AACGGCAGCCGAGACTGCCATCGACCCGAGAAAACCGCAGTTACTTAAAG
CTTCCAATGGTGGTGACGAGGGGCGGCGCGAGTTATCGTTTTGGGGCTTC
GCGAAACAGCTTTCTACGCACAAGAATTTTTGGCTCTGCTGTCGACACAA
CTCAACAAGAGAACGTAAATTTATCACTGATGGGTCGAGAAAACGAATCT
CGCACTTCTTCCTCCACGTGGGGCGCCGGCATGCGCACGCGCAGTCCACC
AACAGGATCAACGGCAGCCGAGACTGCCATCGACCCGAGAAAACCGCAGT
TACTTAAAGCTTCCAATGGTGGTGACGAGGGGCGGCGCGAGTTATCGTTT
TGGGGCTTCGCGAAACAGCTTTCTACGCACAAGAATTTTTGGCTGTACGT
GTCAATGAATTTCGTGGAGAATTTTCATAATCTTTTCGACCAATCGTTCT
TCGTGTTTCTCGACACCAAGATGCTGAGGCAGACGTTGCCTCCAGGTGTC
CACGGCGTGCTCACGGCCCTATGTTTATACTTGCCAAAGGTACGTGTCAA
TGAATTTCGTGGAGAATTTTCATAATCTTTTCGACCAATCGTTCTTCGTG
TTTCTCGACACCAAGATGCTGAGGCAGACGTTGCCTCCAGGTGTCCACGG
CGTGCTCACGGCCCTATGTTTATACTTGCCAAAGATCATGACACAAATAC
TAACTCCGGTGGCCAACCATTTCGGCGTGTATTCAGTCATGCTTTACGCG
GCAGCCTTCAAGGTGGCTGCAGGTTGCACAACATTCGCCTTTGGAGTGCA
AGCATGGCCGGTGTGGGCCGTACTCTTCTTGGGCAACCGTCTGGCGGCAA
CTGTCTGGAGTTTCTACAATCTGTCGTTTTCCGACATCATGACACAAATA
CTAACTCCGGTGGCCAACCATTTCGGCGTGTATTCAGTCATGCTTTACGC
GGCAGCCTTCAAGGTGGCTGCAGGTTGCACAACATTCGCCTTTGGAGTGC
AAGCATGGCCGGTGTGGGCCGTACTCTTCTTGGGCAACCGTCTGGCGGCA
ACTGTCTGGAGTTTCTACAATCTGTCGTTTTCCGACGTTATCGATGAGGA
CACTCTGCGCAACAGGCGGCCGGAGAGTATGTCAGTGTCCGTGCATGGCG
TACAGGCGCTGTTCGTCAAGCCGGCGCAAAGTCTCGCCCCCATCCTGGGC
ATGAAGTTCCTGCCCGACGGCGCTTTGAAAACGGACCTAGTCTCCATGTC
CGATAGTCAGGTAGGTGTATATAATACAGCATCATTTTATATAATTGTTA
TCGATGAGGACACTCTGCGCAACAGGCGGCCGGAGAGTATGTCAGTGTCC
GTGCATGGCGTACAGGCGCTGTTCGTCAAGCCGGCGCAAAGTCTCGCCCC
CATCCTGGGCATGAAGTTCCTGCCCGACGGCGCTTTGAAAACGGACCTAG
TCTCCATGTCCGATAGTCAGGTAGGTGTATATAATACAGCATCATTTTAT
ATAATT
back to top