mRNA_H-paniculata_contig84.16409.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig84.16409.1
Unique NamemRNA_H-paniculata_contig84.16409.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig84.16409.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE)

HSP 1 Score: 289 bits (739), Expect = 2.400e-85
Identity = 172/423 (40.66%), Postives = 231/423 (54.61%), Query Frame = 2
Query:  188 ACALPDNGGLWMLENSVEHRQPAEEYAFFEAGRPANRFYLLLHQRPQATMSTGLGPLGFASAQSKCWSATVGSMCGMLPQIITDSSGPLGERAQAHLPWIPMVRSLGTIVRVLAEQEGVSAQQQAVALPPVLVAWTHRGRSEDGSLPTPDIDALGGLDAPGRNCRWLQGNVGNLVHMAKITTLLSLLDNLPPAGMPPGSDYPFGGIEPADAIRARFRSMSRTRALATQSAQPNDNTRTIPSAEYVLIERRFLGIEPCLAARCPCCG----AEDVTTRHAGTFHRAGAQVDQHQPLLHAVTRLLKRLGIRSTVEDGNPFTAGRDYRMDIVVPAEELRDALINAYRDKGLLIDVTHADPQSTGHLERGSATIDGSAAAISEARKSAHYARRGHASFDECCFKLPPLAVEIFGRLGKCGEELLKQV 1444
            AC   DN  +W+LE ++  R    E  FF+     +RF L  +Q+ QA +STG G LG  +A  + +SA++G++ G LP +I    GPLGE  +  +P   +V  +G  ++ L ++  +S +     LPP  V W      E G    P +  L   D      R  Q  +G  V+  ++   +  L++LP   +PP  D P+GG E  +   AR RS       A   A P D  R IPS E+V   RR LG+E  LA RCP C      E +TT HA T  R GAQV+ H+PL +A++R L  L ++  VE G PFT  R+  MDIV+    L +A    YR+KG L+DVTHADP +  HL  GSAT DG+AA  SEARK  HYAR GH SFDE  FKL  LAVE FGRLG+ G E + ++
Sbjct:  217 ACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPTGETGRR-QPTVAELAAHDGESTTPRKAQHELGKAVNKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGTLLDVTHADPHAQVHLRNGSATSDGTAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDEL 638          
BLAST of mRNA_H-paniculata_contig84.16409.1 vs. uniprot
Match: A0A6H5JQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ53_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 3.250e-84
Identity = 169/430 (39.30%), Postives = 229/430 (53.26%), Query Frame = 2
Query:  215 LWMLENSVEHRQPAEEYAFFEAGRPANRFYLLLHQRPQATMSTGLGPLGFASAQSKCWSATVGSMCGMLPQIITDSSGPLGERAQAHLPWIPMVRSLGTIVRVLAEQEGVSAQQQAVALPPVLVAWTHRGRSEDGSLPTPDIDALGGLDAPGRNCRWLQGNVGNLVHMAKITTLLSLLDNLPPAGMPPGSDYPFGGIEPADAIRARFRSMSRTRALATQSAQPNDNTRTIPSAEYVLIERRFLGIEPCLAARCPCCG----AEDVTTRHAGTFHRAGAQVDQHQPLLHAVTRLLKRLGIRSTVEDGNPFTAGRDYRMDIVVPAEELRDALINAYRDKGLLIDVTHADPQSTGHLERGSATIDGSAAAISEARKSAHYARRGHASFDECCFKLPPLAVEIFGRLGKCGEELLKQVTGDTRDWRSTFLLGLK 1492
            +W+LE ++  R    E  FF+     +RF L  +Q+ QA +STG G LG   A  + +SA++G++ G LP +I    GPLGE  +  +P   +V  +G  ++ L ++ G+S +     LPP  V W      E G    P +  L   D      R  Q  +G  ++  ++   +  L++LP   +PP  D P+GG E  +   AR RS           A   D  R IPS E+V   RR LG+E  LA RCP C      E +TT HA T  R GAQV+ H+PL +A++R L  L ++  VE G PFT  R+  MDIV+    L +A    YR+KG+L+DVTHADPQ+  HL  GSAT DG AA  SEARK  HYA  GH SFDE  FKL  LAVE FGRLG+ G E + ++       R    + LK
Sbjct:    3 MWVLEATMGLRDTEVEEEFFQDDCQPDRFKLRPYQQAQARLSTGAGELGLPEAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGISVEILKGILPPSWVEWALEPTGETGRR-QPTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHTFLRAAATDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCQRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYACPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALK 431          
BLAST of mRNA_H-paniculata_contig84.16409.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 1.400e-82
Identity = 171/423 (40.43%), Postives = 232/423 (54.85%), Query Frame = 2
Query:  188 ACALPDNGGLWMLENSVEHRQPAEEYAFFEAGRPANRFYLLLHQRPQATMSTGLGPLGFASAQSKCWSATVGSMCGMLPQIITDSSGPLGERAQAHLPWIPMVRSLGTIVRVLAEQEGVSAQQQAVALPPVLVAWTHRGRSEDGSLPTPDIDALGGLDAPGRNCRWLQGNVGNLVHMAKITTLLSLLDNLPPAGMPPGSDYPFGGIEPADAIRARFRSMSRTRALATQSAQPNDNTRTIPSAEYVLIERRFLGIEPCLAARCPCCG----AEDVTTRHAGTFHRAGAQVDQHQPLLHAVTRLLKRLGIRSTVEDGNPFTAGRDYRMDIVVPAEELRDALINAYRDKGLLIDVTHADPQSTGHLERGSATIDGSAAAISEARKSAHYARRGHASFDECCFKLPPLAVEIFGRLGKCGEELLKQV 1444
            AC L DN  +W+LE ++  R    E  FF+     +RF +  +Q+ QA +STG G LG  +A  + +SA++G++ G LP +I    GPLGE  +  +P   +V  +G  ++ L ++  +S +     LPP  V W      E G    P +  L   D      R  Q  +G  ++  ++   +  L++LP   +PP  D P+GG E  +   AR RS       A   A P D  R IPS E+V   RR LG+E  LA +CP C      E +TT HA T  R GAQV+ H+PL +A++R L  L ++  VE G PFT  R+  MDIV+    L +A    YR KG+L+DVTHADPQ+  HL  GSAT DG AA  SEARK  HYAR GH SFDE  FKL  LAVE FGRLG+ G E + ++
Sbjct:  698 ACELLDNMVMWVLEATMGLRDTEVEEEFFQDDYQPDRFKIKTYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPAGETGRR-QPTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAEKCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRKKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDEL 1119          
BLAST of mRNA_H-paniculata_contig84.16409.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 285 bits (729), Expect = 5.470e-80
Identity = 172/439 (39.18%), Postives = 234/439 (53.30%), Query Frame = 2
Query:  188 ACALPDNGGLWMLENSVEHRQPAEEYAFFEAGRPANRFYLLLHQRPQATMSTGLGPLGFASAQSKCWSATVGSMCGMLPQIITDSSGPLGERAQAHLPWIPMVRSLGTIVRVLAEQEGVSAQQQAVALPPVLVAWTHRGRSEDGSLPTPDIDALGGLDAPGRNCRWLQGNVGNLVHMAKITTLLSLLDNLPPAGMPPGSDYPFGGIEPADAIRARFRSMSRTRALATQSAQPNDNTRTIPSAEYVLIERRFLGIEPCLAARCPCCG----AEDVTTRHAGTFHRAGAQVDQHQPLLHAVTRLLKRLGIRSTVEDGNPFTAGRDYRMDIVVPAEELRDALINAYRDKGLLIDVTHADPQSTGHLERGSATIDGSAAAISEARKSAHYARRGHASFDECCFKLPPLAVEIFGRLGKCGEELLKQVTGDTRDWRSTFLLGLK 1492
            AC   DN  +W+LE ++  R    E  FF+     +RF L  +Q+ QA +STG G LG  +A  + +SA++G++   LP +I    GPLGE  +  +P   +V  +G  ++ L ++ G+S +     LPP  V W      E G    P +  L   D      R  Q  +G  ++  ++   +  L++LP   +PP  D P+GG E  +   AR RS       A   A P D  R IPS E+V   RR LGIE  LA RCP C      E +TT HA T  R GAQV+ H+PL +A++R L  L ++  VE G PFT  R+  MDIV+    L +A    YR+KG+L+DVTHADPQ+  HL  GSAT DG+    SEARK  HY+R GH S DE  FKL  LAVE FGRLG+ G E + ++       R    + LK
Sbjct:  741 ACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVDTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGISVEILKGILPPSWVEWALEPTGETGRR-QPTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGIEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGTEIQASEARKRQHYSRPGHVSLDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALK 1178          
BLAST of mRNA_H-paniculata_contig84.16409.1 vs. uniprot
Match: A0A6H5LLI3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLI3_9PHAE)

HSP 1 Score: 269 bits (687), Expect = 1.800e-79
Identity = 167/420 (39.76%), Postives = 224/420 (53.33%), Query Frame = 2
Query:  245 RQPAEEYAFFEAGRPANRFYLLLHQRPQATMSTGLGPLGFASAQSKCWSATVGSMCGMLPQIITDSSGPLGERAQAHLPWIPMVRSLGTIVRVLAEQEGVSAQQQAVALPPVLVAWTHRGRSEDGSLPTPDIDALGGLDAPGRNCRWLQGNVGNLVHMAKITTLLSLLDNLPPAGMPPGSDYPFGGIEPADAIRARFRSMSRTRALATQSAQPNDNTRTIPSAEYVLIERRFLGIEPCLAARCPCCG----AEDVTTRHAGTFHRAGAQVDQHQPLLHAVTRLLKRLGIRSTVEDGNPFTAGRDYRMDIVVPAEELRDALINAYRDKGLLIDVTHADPQSTGHLERGSATIDGSAAAISEARKSAHYARRGHASFDECCFKLPPLAVEIFGRLGKCGEELLKQVTGDTRDWRSTFLLGLK 1492
            R    E  FF+     +RF L  +Q+ QA +STG G LG  +A  + +SA++G++ G LP +I     PLGE  +  +P   +V  +G  ++ L ++ GVS +     LPP+ V W  +   E G    P +  L   D      R  Q  +G  ++  ++   +  L++LP   +PP  D P+GG E  +   AR RS       A   A P D  R I S E+    RR L IE  LA RCP C      E +TT HA T  R GAQV+ H+PL +A++R L  L ++  VE G PFT  R+  MDIV+    L +A    YR+KG+L+DVTHADPQ+  HL  GSAT DG AA  SEARK  HYAR GH SFDE  FKL  LAVE FGRLG+ G E + ++       R    + LK
Sbjct:    4 RDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALLVPLGELVRVRIPGTVLVERMGDAIKELNQEHGVSVEILKGILPPLWVEWALQPPGETGRR-QPTVAELAAHDGEYTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHALLRAAPTDRAREIQSNEFGYATRRALEIEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALK 422          
BLAST of mRNA_H-paniculata_contig84.16409.1 vs. uniprot
Match: A0A6H5KTK7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK7_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 6.960e-69
Identity = 145/376 (38.56%), Postives = 201/376 (53.46%), Query Frame = 2
Query:  215 LWMLENSVEHRQPAEEYAFFEAGRPANRFYLLLHQRPQATMSTGLGPLGFASAQSKCWSATVGSMCGMLPQIITDSSGPLGERAQAHLPWIPMVRSLGTIVRVLAEQEGVSAQQQAVALPPVLVAWTHRGRSEDGSLPTPDIDALGGLDAPGRNCRWLQGNVGNLVHMAKITTLLSLLDNLPPAGMPPGSDYPFGGIEPADAIRARFRSMSRTRALATQSAQPNDNTRTIPSAEYVLIERRFLGIEPCLAARCPCCGA----EDVTTRHAGTFHRAGAQVDQHQPLLHAVTRLLKRLGIRSTVEDGNPFTAGRDYRMDIVVPAEELRDALINAYRDKGLLIDVTHADPQSTGHLERGSATIDGSAAAISEARKSAH 1330
            +W+LE ++  R    E  FF+     +RF L  +Q+ QA +STG G LG  +A  + +SA++G++ G LP +I    GPLGE  +  +P   +V  +G  ++ L ++ GVS +     LPP  V W      E G    P +  L   D      R  Q  +G  V + ++   +  L+++P   +PP  D P+GG E  +   AR RS       A   A P D  R IPS E+V   RR LG+E  LA RCP C      E +TT HA T  R G QV+ H+P  +A++R L  L ++  VE G PFT  R+  MDIV+    L +A    YR+KG+L+DVTHADPQ+  HL  GSAT DG+AA  SEARK  H
Sbjct:    3 MWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQSQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGVSVEILKGILPPSWVEWALEPTGETGRR-QPTVAELAAHDGESTTPRKAQHKLGKAVKI-QLEKFMESLEHVPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREREIITTVHARTCPRDGEQVNMHEPSKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGTAAEASEARKRQH 376          
BLAST of mRNA_H-paniculata_contig84.16409.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 6.440e-68
Identity = 167/458 (36.46%), Postives = 228/458 (49.78%), Query Frame = 2
Query:  188 ACALPDNGGLWMLENSVEHRQPAEEYAFFEAGRPANRFYLLLHQ--------RPQATMSTGLGPLGFASAQSKCWSATVGSMCGMLPQIITDSSGPLGERAQAHLPWIPMVRSLGTIVRVLAEQEGVSAQQQAVALPPVLVAWTHRGRSEDGSLPTPDIDALGGLDAPGRNCRWLQGNVGNLVHMAKITTLLSLLDNLPPAGMPPGSDYPFGGIEPADAIRARFRSMSRTRALATQSAQPNDNTRTIPSAEYVLIERRFLGIEPCLAARCPCC--GAED--VTTRHAGTFHRAGAQVDQHQPLL---------------------------HAVTRLLKRLGIRSTVEDGNPFTAGRDYRMDIVVPAEELRDALINAYRDKGLLIDVTHADPQSTGHLERGSATIDGSAAAISEARKSAHYARRGHASFDECCFKLPPLAVEIFGRLGKCGEELLKQV 1444
            AC   DN  +W+LE ++  R   +E  FF+     +RF  L             QA +S G G LG  +A  + +SA++G++ G LP +I    GPLGE  +  +P   +V  +G  ++ L ++  +S +     LPP  V W      E G    P +  L   D      R  Q  +G  ++  ++  L+  L +LP   +PP  D P+GG E  +   AR RS       A   A P D  R IPS E+V   RR LG+E  LA RCP C  G E   +TT  A T  R GAQV+ H+PL                            +A++R L  L ++  VE G PFT  R+  MDIV+    L +A    YR+KG+L+DVT+ADPQ+  HL  GSAT DG+AA  SEARK  HYAR GHA F E   KL  +AVE FGRLG+ G E + ++
Sbjct:  380 ACERLDNMVMWVLEATMGLRDAEDEEEFFQDDCQPDRFKRLAGALVPADAPPAAQARLSAGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPTGETGRR-QPTVAELAAHDGESTTPRKAQHKLGKAINDIQLEKLMESLKHLPQEAVPPTRDNPYGGQEARNMAYARTRSSKGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHKGREGQIITTVQARTCSRDGAQVNMHEPLKXXXXXXXXXXXXXXXXXXXXXXXXXXKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTNADPQAQVHLRNGSATSDGTAAQASEARKRQHYARPGHA-FVERSLKLTTIAVESFGRLGEEGYEFIDEL 835          
BLAST of mRNA_H-paniculata_contig84.16409.1 vs. uniprot
Match: A0A6H5JTC7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC7_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 9.660e-67
Identity = 161/414 (38.89%), Postives = 209/414 (50.48%), Query Frame = 2
Query:  257 EEYAFFEAGRPANRFYLLLHQRPQATMSTGLGPLGFASAQSKCWSATVGSMCGMLPQIITDSSGPLGERAQAHLPWIPMVRSLGTIVRV---LAEQEGVSAQQQAVALPPVLVAWTHRGRSEDGSLPTPDIDALGGLDAPGRNCRWLQGNVGNLVHMAKITTLLSLLDNLPPAGMPPGSDYPFGGIEPADAIRARFRSMSRTRALATQSAQPNDNTRTIPSAEYVLIERRFLGIEPCLAARCPCCG----AEDVTTRHAGTFHRAGAQVDQHQPLLHAVTRLLKRLGIRSTVEDGNPFTAGRDYRMDIVVPAEELRDALINAYRDKGLLIDVTHADPQSTGHLERGSATIDGSAAAISEARKSAHYARRGHASFDECCFKLPPLAVEIFGRLGKCGEELLKQVTGDTRDWRSTF 1477
            +E  FF+     +RF L  +Q+ QA +STG G LG  +A  + +SA++G++ G L  +                                  L  + GVS +     LPP  V W      E G    P +  L   D      R  Q  +G  V+  ++  L+  L +LP   +PP SD P+GG E  +   AR RS       A   A P D  R IPS E+V   RR LG+E  LA RCP C      E +TT HA T  R GAQV+ H+PL +A++R L  L ++  VE G PFT  R+  MD+V+    L +A    YR+KG+L+DVTHADPQ+  HL  GSAT DG+AA  SEARK  HYAR GH SFDE  FKL  LAVE FGRLG+ G +      G T D +  F
Sbjct:  392 DEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLFAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNREHGVSVKILKGILPPSWVEWAFEPPGETGRR-QPTVAELAAYDGESTTPRKAQHKLGKAVNKIQLEKLIESLGHLPQEAVPPTSDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDLVIRPGALTNASSPGYRNKGVLLDVTHADPQAQVHLRNGSATSDGTAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYD------GGTMDLKGVF 798          
BLAST of mRNA_H-paniculata_contig84.16409.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 2.990e-61
Identity = 136/334 (40.72%), Postives = 175/334 (52.40%), Query Frame = 2
Query:  503 LGTIVRVLAEQEGVSAQQQAVALPPVLVAWTHRGRSEDGSLPTPDIDALGGLDAPGRNCRWLQGNVGNLVHMAKITTLLSLLDNLPPAGMPPGSDYPFGGIEPADAIRARFRSMSRTRALATQSAQPNDNTRTIPSAEYVLIERRFLGIEPCLAARCPCCG----AEDVTTRHAGTFHRAGAQVDQHQPLLHAVTRLLKRLGIRSTVEDGNPFTAGRDYRMDIVVPAEELRDALINAYRDKGLLIDVTHADPQSTGHLERGSATIDGSAAAISEARKSAHYARRGHASFDECCFKLPPLAVEIFGRLGKCGEELLKQVTGDTRDWRSTFLLGLK 1492
            +G  ++ L ++ GVS +     LPP  V W      E      P +  L   D      R  Q  +G  V   ++   +  L++LP   +P   D P+GG E  +   AR RS       A   A P +  R IP  E+V   RR LG+E  LA RCP C      E +TT HA T  R GAQV+ H+PL +A++R L  L ++  VE G PFT  R+  MDIV+    L +A    YR+KG+L+DVTHADPQ+  HL  GSAT DG AA  SEARK  HYAR GH SFDE  FKL  LAVE FGRLG+ G E + ++       R    + LK
Sbjct:    1 MGDAIKELNQEHGVSVEILKGILPPSWVEWALEPAGETRRR-QPTVAELAAHDEESTTPRKAQHKLGKAVSKIQLEKFMESLEHLPQEAVPHTRDNPYGGQEARNMAYARTRSSQGQGEHAFLKAAPTERAREIPLNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALK 333          
BLAST of mRNA_H-paniculata_contig84.16409.1 vs. uniprot
Match: A0A6H5KUZ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ8_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 5.030e-61
Identity = 133/365 (36.44%), Postives = 191/365 (52.33%), Query Frame = 2
Query:  188 ACALPDNGGLWMLENSVEHRQPAEEYAFFEAGRPANRFYLLLHQRPQATMSTGLGPLGFASAQSKCWSATVGSMCGMLPQIITDSSGPLGERAQAHLPWIPMVRSLGTIVRVLAEQEGVSAQQQAVALPPVLVAWTHRGRSEDGSLPTPDIDALGGLDAPGRNCRWLQGNVGNLVHMAKITTLLSLLDNLPPAGMPPGSDYPFGGIEPADAIRARFRSMSRTRALATQSAQPNDNTRTIPSAEYVLIERRFLGIEPCLAARCPCCG----AEDVTTRHAGTFHRAGAQVDQHQPLLHAVTRLLKRLGIRSTVEDGNPFTAGRDYRMDIVVPAEELRDALINAYRDKGLLIDVTHADPQSTGHLER 1270
            AC   DN  +W+LE ++  R    E  FF+     +RF L  +Q+ QA +STG G LG  +A  + +SA++G++ G LP +I    GPLGE  +  +P   +V  +G  ++ L ++  +S +     +PP  V W      E G    P +  L   D      R  Q  +G  ++  ++   +  L++LP   +PP  D P+GG E  +   AR RS       A   A P D  R IPS E+V   RR LG+E  LA RCP C      E +TT HA T  R GAQV+ H+PL +A++R L  L ++  VE G PFT  R+  MDIV+    L +A    YR+KG+L+DVTHADPQ+   + R
Sbjct:  287 ACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGIIPPSWVEWALEPTGETGRR-QPTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVAISR 650          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig84.16409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHZ7_9PHAE2.400e-8540.66Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JQ53_9PHAE3.250e-8439.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K195_9PHAE1.400e-8240.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMQ2_9PHAE5.470e-8039.18Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LLI3_9PHAE1.800e-7939.76Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTK7_9PHAE6.960e-6938.56Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLG6_9PHAE6.440e-6836.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JTC7_9PHAE9.660e-6738.89Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDZ4_9PHAE2.990e-6140.72Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUZ8_9PHAE5.030e-6136.44Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig84contigH-paniculata_contig84:51186..53070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1885
Cds size1281
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig84.16409.1prot_H-paniculata_contig84.16409.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig84 51406..52686 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931055.1322706-UTR-H-paniculata_contig84:51185..514051622931055.1322706-UTR-H-paniculata_contig84:51185..51405Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig84 51186..51405 +
1691481569.357064-UTR-H-paniculata_contig84:51185..514051691481569.357064-UTR-H-paniculata_contig84:51185..51405Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig84 51186..51405 +
1622931055.1631196-UTR-H-paniculata_contig84:52686..530701622931055.1631196-UTR-H-paniculata_contig84:52686..53070Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig84 52687..53070 +
1691481569.3778698-UTR-H-paniculata_contig84:52686..530701691481569.3778698-UTR-H-paniculata_contig84:52686..53070Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig84 52687..53070 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931055.1482227-CDS-H-paniculata_contig84:51405..526861622931055.1482227-CDS-H-paniculata_contig84:51405..52686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig84 51406..52686 +
1691481569.3663423-CDS-H-paniculata_contig84:51405..526861691481569.3663423-CDS-H-paniculata_contig84:51405..52686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig84 51406..52686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig84.16409.1

>prot_H-paniculata_contig84.16409.1 ID=prot_H-paniculata_contig84.16409.1|Name=mRNA_H-paniculata_contig84.16409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=427bp
MLENSVEHRQPAEEYAFFEAGRPANRFYLLLHQRPQATMSTGLGPLGFAS
AQSKCWSATVGSMCGMLPQIITDSSGPLGERAQAHLPWIPMVRSLGTIVR
VLAEQEGVSAQQQAVALPPVLVAWTHRGRSEDGSLPTPDIDALGGLDAPG
RNCRWLQGNVGNLVHMAKITTLLSLLDNLPPAGMPPGSDYPFGGIEPADA
IRARFRSMSRTRALATQSAQPNDNTRTIPSAEYVLIERRFLGIEPCLAAR
CPCCGAEDVTTRHAGTFHRAGAQVDQHQPLLHAVTRLLKRLGIRSTVEDG
NPFTAGRDYRMDIVVPAEELRDALINAYRDKGLLIDVTHADPQSTGHLER
GSATIDGSAAAISEARKSAHYARRGHASFDECCFKLPPLAVEIFGRLGKC
GEELLKQVTGDTRDWRSTFLLGLKFR*
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mRNA from alignment at H-paniculata_contig84:51186..53070+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig84.16409.1 ID=mRNA_H-paniculata_contig84.16409.1|Name=mRNA_H-paniculata_contig84.16409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1885bp|location=Sequence derived from alignment at H-paniculata_contig84:51186..53070+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGATTGCGGCGTCGCGTTCGTTCAGCAATACGCCGTCACAGTAGTTGAG GAAAAGAGAATAAAGCATCTTGCGTGTCTACTAGCGCATATGCCCGACAA ACAAGCGGCGATGCTAATCGCCACAAAGTCCGACGTCCTGAAGACCTGCT TCCTGGGGAGGATGATGGATGCCGAACTTCCGACCAAGCCTGCGCACTAC CCGACAATGGCGGGCTATGGATGTTGGAGAACAGCGTGGAACACCGGCAA CCAGCCGAAGAATACGCTTTCTTCGAAGCCGGCCGCCCGGCGAACCGTTT TTACCTCCTGCTCCACCAGAGACCGCAGGCCACCATGTCCACCGGATTGG GGCCGTTGGGATTCGCCTCGGCACAGAGCAAGTGCTGGTCAGCAACGGTG GGGAGTATGTGCGGCATGCTGCCGCAGATAATCACGGACTCGTCGGGACC GTTGGGGGAGCGGGCGCAGGCACACCTCCCCTGGATACCGATGGTGCGCT CATTAGGGACAATTGTCCGCGTGTTGGCAGAACAGGAGGGAGTTAGCGCC CAACAGCAAGCTGTGGCGTTGCCGCCCGTGCTGGTCGCGTGGACCCACAG AGGAAGGAGCGAAGACGGATCGCTGCCAACGCCGGACATCGACGCTCTAG GAGGTCTCGACGCACCAGGAAGAAACTGTCGTTGGCTGCAAGGGAATGTT GGCAATCTGGTCCACATGGCCAAGATAACGACCTTGCTCTCGCTGCTTGA CAACCTACCCCCGGCTGGTATGCCACCTGGCTCAGATTACCCATTCGGAG GGATCGAGCCGGCCGACGCGATTAGAGCGAGATTCCGTAGCATGTCGAGA ACTCGAGCTCTCGCGACCCAAAGTGCACAGCCCAATGATAACACCAGGAC TATACCATCAGCAGAGTACGTGCTCATCGAGCGGAGGTTCCTTGGCATTG AGCCCTGCCTAGCCGCGCGATGCCCATGCTGCGGAGCGGAGGACGTAACC ACGCGCCACGCCGGCACTTTCCATCGAGCGGGGGCGCAGGTAGACCAACA CCAGCCGCTCCTACACGCGGTCACGCGACTCCTTAAGCGACTGGGCATCA GAAGCACGGTGGAGGATGGAAACCCGTTTACGGCGGGCCGGGACTACCGG ATGGACATCGTCGTCCCGGCAGAAGAGCTCCGAGATGCTCTCATCAACGC CTACCGCGACAAGGGCCTCCTTATCGACGTCACGCACGCAGATCCCCAGT CGACAGGGCACCTCGAGCGGGGGAGCGCTACCATCGACGGCTCAGCCGCG GCCATTTCCGAGGCGCGCAAAAGCGCGCACTACGCTCGAAGAGGACACGC ATCCTTCGACGAGTGTTGTTTCAAACTTCCCCCCCTCGCGGTGGAAATCT TTGGGCGTCTCGGAAAGTGCGGGGAGGAGCTGCTTAAGCAGGTAACAGGC GATACTCGGGATTGGAGATCAACTTTCTTGTTGGGATTGAAGTTCCGTTG AATTTGAATGGAATACTTCGAAAATGGTGCTGGGGAAAGGCACTTTCCGT GCACACTTTCAATGAAACTTCAATCCCAACAAAAATGTCAATCCTCGATC TCGAGTATGGCCTGTTTGGTGGCATCCAGCGTGGTGAGAGAACAAGAGGG GGATGAGGTTTCGCAGAATGGAGTACTGCTAGAGCGGACATAAAAGTAAT TTCGGTGACAACACAGATAGCCAGGCATCTCGAGACGGGTGCAGAAGGGG GCCTCAATCCTCCAGCATGGGGATGGAGTTTTGGTGGCGCCGTCGTTTTC GATTACTGCATCTTACAGTCACCGTGTACTTAAAGTCTAGGGTGGCTTTT TCTTTAGGATGATTATTTTTCAGAAATAATTTGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig84:51186..53070+

>mRNA_H-paniculata_contig84.16409.1 ID=mRNA_H-paniculata_contig84.16409.1|Name=mRNA_H-paniculata_contig84.16409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2562bp|location=Sequence derived from alignment at H-paniculata_contig84:51186..53070+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGAGAACAGCGTGGAACACCGGCAACCAGCCGAAGAATACGCTTT
CTTCGAAGCCGGCCGCCCGGCGAACCGTTTTTACCTCCTGCTCCACCAGA
GACCGCAGGCCACCATGTCCACCGGATTGGGGCCGTTGGGATTCGCCTCG
GCACAGAGCAAGTGCTGGTCAGCAACGGTGGGGAGTATGTGCGGCATGCT
GCCGCAGATAATCACGGACTCGTCGGGACCGTTGGGGGAGCGGGCGCAGG
CACACCTCCCCTGGATACCGATGGTGCGCTCATTAGGGACAATTGTCCGC
GTGTTGGCAGAACAGGAGGGAGTTAGCGCCCAACAGCAAGCTGTGGCGTT
GCCGCCCGTGCTGGTCGCGTGGACCCACAGAGGAAGGAGCGAAGACGGAT
CGCTGCCAACGCCGGACATCGACGCTCTAGGAGGTCTCGACGCACCAGGA
AGAAACTGTCGTTGGCTGCAAGGGAATGTTGGCAATCTGGTCCACATGGC
CAAGATAACGACCTTGCTCTCGCTGCTTGACAACCTACCCCCGGCTGGTA
TGCCACCTGGCTCAGATTACCCATTCGGAGGGATCGAGCCGGCCGACGCG
ATTAGAGCGAGATTCCGTAGCATGTCGAGAACTCGAGCTCTCGCGACCCA
AAGTGCACAGCCCAATGATAACACCAGGACTATACCATCAGCAGAGTACG
TGCTCATCGAGCGGAGGTTCCTTGGCATTGAGCCCTGCCTAGCCGCGCGA
TGCCCATGCTGCGGAGCGGAGGACGTAACCACGCGCCACGCCGGCACTTT
CCATCGAGCGGGGGCGCAGGTAGACCAACACCAGCCGCTCCTACACGCGG
TCACGCGACTCCTTAAGCGACTGGGCATCAGAAGCACGGTGGAGGATGGA
AACCCGTTTACGGCGGGCCGGGACTACCGGATGGACATCGTCGTCCCGGC
AGAAGAGCTCCGAGATGCTCTCATCAACGCCTACCGCGACAAGGGCCTCC
TTATCGACGTCACGCACGCAGATCCCCAGTCGACAGGGCACCTCGAGCGG
GGGAGCGCTACCATCGACGGCTCAGCCGCGGCCATTTCCGAGGCGCGCAA
AAGCGCGCACTACGCTCGAAGAGGACACGCATCCTTCGACGAGTGTTGTT
TCAAACTTCCCCCCCTCGCGGTGGAAATCTTTGGGCGTCTCGGAAAGTGC
GGGGAGGAGCTGCTTAAGCAGGTAACAGGCGATACTCGGGATTGGAGATC
AACTTTCTTGTTGGGATTGAAGTTCCGTTGAATGTTGGAGAACAGCGTGG
AACACCGGCAACCAGCCGAAGAATACGCTTTCTTCGAAGCCGGCCGCCCG
GCGAACCGTTTTTACCTCCTGCTCCACCAGAGACCGCAGGCCACCATGTC
CACCGGATTGGGGCCGTTGGGATTCGCCTCGGCACAGAGCAAGTGCTGGT
CAGCAACGGTGGGGAGTATGTGCGGCATGCTGCCGCAGATAATCACGGAC
TCGTCGGGACCGTTGGGGGAGCGGGCGCAGGCACACCTCCCCTGGATACC
GATGGTGCGCTCATTAGGGACAATTGTCCGCGTGTTGGCAGAACAGGAGG
GAGTTAGCGCCCAACAGCAAGCTGTGGCGTTGCCGCCCGTGCTGGTCGCG
TGGACCCACAGAGGAAGGAGCGAAGACGGATCGCTGCCAACGCCGGACAT
CGACGCTCTAGGAGGTCTCGACGCACCAGGAAGAAACTGTCGTTGGCTGC
AAGGGAATGTTGGCAATCTGGTCCACATGGCCAAGATAACGACCTTGCTC
TCGCTGCTTGACAACCTACCCCCGGCTGGTATGCCACCTGGCTCAGATTA
CCCATTCGGAGGGATCGAGCCGGCCGACGCGATTAGAGCGAGATTCCGTA
GCATGTCGAGAACTCGAGCTCTCGCGACCCAAAGTGCACAGCCCAATGAT
AACACCAGGACTATACCATCAGCAGAGTACGTGCTCATCGAGCGGAGGTT
CCTTGGCATTGAGCCCTGCCTAGCCGCGCGATGCCCATGCTGCGGAGCGG
AGGACGTAACCACGCGCCACGCCGGCACTTTCCATCGAGCGGGGGCGCAG
GTAGACCAACACCAGCCGCTCCTACACGCGGTCACGCGACTCCTTAAGCG
ACTGGGCATCAGAAGCACGGTGGAGGATGGAAACCCGTTTACGGCGGGCC
GGGACTACCGGATGGACATCGTCGTCCCGGCAGAAGAGCTCCGAGATGCT
CTCATCAACGCCTACCGCGACAAGGGCCTCCTTATCGACGTCACGCACGC
AGATCCCCAGTCGACAGGGCACCTCGAGCGGGGGAGCGCTACCATCGACG
GCTCAGCCGCGGCCATTTCCGAGGCGCGCAAAAGCGCGCACTACGCTCGA
AGAGGACACGCATCCTTCGACGAGTGTTGTTTCAAACTTCCCCCCCTCGC
GGTGGAAATCTTTGGGCGTCTCGGAAAGTGCGGGGAGGAGCTGCTTAAGC
AGGTAACAGGCGATACTCGGGATTGGAGATCAACTTTCTTGTTGGGATTG
AAGTTCCGTTGA
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