mRNA_H-paniculata_contig8395.16401.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8395.16401.1
Unique NamemRNA_H-paniculata_contig8395.16401.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8395.16401.1 vs. uniprot
Match: D7FLW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLW4_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 2.470e-118
Identity = 243/545 (44.59%), Postives = 334/545 (61.28%), Query Frame = 3
Query:   93 FEYISVYGVDAGMHQLEVSPAGSGSSLSFEEDSLSFMVVSTATADEEGLESAEEAAESAWEDFESGAQYTTDVSSGGTATLSDSVVYRLDLATSNNPVILTVSVPIEESGAFALFLEHGSEEFSVSVADPFGEVLVASAVEEGESGHEDHDHXXXXXXXXXXXXXXXXXXXXGNSSATATQWTNALLASLAISLCSLVGIGLVANRKVAHNIDLSYACLVAAGALLATSLMHIVPEALEGLEEEFEGNLHDIGLRTGLALLGGIFFGVVIHVMLAAEHSHNLSSTDHVHHVHDRDVQHGAAANVNDSELSRGRTTSSAPSATAIAPLV-SVAAVPSKNLDSIINAAKDRDFGDLKGLHPVCWTVIAGDLVHNFADGITIGASFISCSPTIGWTVTAAAILHELPHEVADFMALINGGMTVLQACAFNFLSALSAIIGVIVILALHDSLTSAQVATLLLFGGGSFLFIALSELLPEALLPTPTATPVMSNNDGVTDGTNMLKPPRSGMWKGPQLKKIVSFVFGALLIGIPLLWDEHCVAEGHDHSH 1724
            FE  +VY V+AG + L   P G     SFEE++ +FMVV  A+AD +GLE AEE AE+AW+++ SGA+  T ++SG +AT S  VVY++ L    +P++L V V +  +GA+A+FLEHGS+E                     E+G                             +ATA +W NAL+ASL +S CS  GI +VA++ VA+NIDLS+A + A+GALL  +L+HI+PEALEGLEE + G+LHD+GL  GLA++GG+  G+V+H +L + HSH+   +               A      E   G   +SA + T+ A L  S     S NL ++I+A K +   D+KGL PVCW VIAGDLVHNFADG+ IGA+F+SCS T+GWTV A+ +LHE+PHEVADFMAL+NGGM+++QA  +NFLSALSA++G ++ILAL D+L+   +A +LL G GSF+FIAL ELLP AL        +++   G             G     Q+ K+ SF+ GA++IGIPLL+DEHC   GHDH H
Sbjct:   44 FEAAAVYDVEAGTNSLAAYPGGG----SFEEETFAFMVVPAASADLDGLEGAEEDAEAAWDEYTSGAEDATVLASGESATPSADVVYQVTL---EDPLVL-VPVDVTAAGAYAVFLEHGSDEEGXXXXXXXXXXXXXX-----ETG-----------------------------TATAGKWGNALVASLVVSACSFAGIVVVASKHVANNIDLSHAFVFASGALLTAALLHIIPEALEGLEESY-GSLHDLGLYAGLAVMGGMSLGIVLHALLESGHSHSPGESX---------XXXXXAV-----EAGGGGAKASAYTGTSEATLPPSPVESNSDNLQALISARKGKSLLDVKGLEPVCWNVIAGDLVHNFADGVAIGAAFLSCSTTMGWTVAASVVLHEVPHEVADFMALLNGGMSLMQAFVYNFLSALSAVLGTVIILALQDTLSEKDIAIVLLVGAGSFIFIALCELLPGAL----AVAALVAKRGG-------------GAIARSQVLKLGSFLLGAIVIGIPLLFDEHC-GTGHDHDH 513          
BLAST of mRNA_H-paniculata_contig8395.16401.1 vs. uniprot
Match: A0A6H5L662_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L662_9PHAE)

HSP 1 Score: 383 bits (983), Expect = 6.030e-116
Identity = 258/567 (45.50%), Postives = 348/567 (61.38%), Query Frame = 3
Query:   93 FEYISVYGVDAGMHQLEVSPAGSGSSLSFEEDSLSFMVVSTATADEEGLESAEEAAESAWEDFESGAQYTTDVSSGGTATLSDSVVYRLDLATSNNPVILTVSVPIEESGAFALFLEHGSEEFSVSVADPFGEVLVASAVEEGESGHEDHDHXXXXXXXXXXXXXXXXXXXXGNSSATATQWTNALLASLAISLCSLVGIGLVANRKVAHNIDLSYACLVAAGALLATSLMHIVPEALEGLEEEFEGNLHDIGLRTGLALLGGIFFGVVIHVMLAAEHSHNLSSTDHVHHVHDRDVQ-------HGAAANVNDSE-------LSRGRTTSSAP---SATAIAPLVSVAAVPSK------NLDSIINAAKDRDFGDLKGLHPVCWTVIAGDLVHNFADGITIGASFISCSPTIGWTVTAAAILHELPHEVADFMALINGGMTVLQACAFNFLSALSAIIGVIVILALHDSLTSAQVATLLLFGGGSFLFIALSELLPEALLPTPTATPVMSNNDGVTDGTNMLKPPRSGMWKGPQLKKIVSFVFGALLIGIPLLWDEHCVA--EGHDH 1718
            FE  +VY V+ G +     PA       FE+D+L+FMVV  A+AD EGL  AEE AE+AW+ + SGA+  T ++ G  AT S  VVY++ L    +P++L V V +  +GA+A+FLEHG+EE  + +A P G V                            XXXXXXXXXX + SA+ TQW N L+AS  +S+CS  G+ +VAN++VA++I LS+A + A+GALL  +L+HI+PEA+EGL+  ++ NLHD+GL  GL +LGG+   VVIH ++ + HSH+     H  H H    +       HG  A V+D         ++ G   S+ P   S  A+     V   PS       NL ++I     R   D+KGL PVCW V+ GDLVHNFADG+TIGA+F++CS T+GWTVTA+A+LHELPHE+ADFMAL+NGGM++ QA A+NFLSALSA++G I+ILAL D+L+   V+ +LL G GSF+FIALSELLPEAL+     T  +S    V    +             QL K+ SF+ GA+LIGIPLL D+HC A  EGHDH
Sbjct:   38 FEVSAVYDVEPGTNSFIAIPAEGR----FEQDTLAFMVVLAASADTEGLAGAEEDAEAAWDAYTSGAEDATVLAPGEPATPSTVVVYQVAL---EDPLVL-VQVEVTIAGAYAVFLEHGAEEVGIVLASPSGVVXXXXXX----------------------XXXXXXXXXXXSGSASGTQWVNGLVASFVVSVCSFAGLLVVANKRVAYSIGLSHAFIFASGALLTAALVHIIPEAMEGLDSSYD-NLHDLGLYAGLTVLGGLSVSVVIHGLMESGHSHS----PHEGHSHGGGTETVRPGGGHGHHARVSDGAGTTMPLGMAEGDKVSAWPGGNSPHAVQIQADVTQPPSPAESSTDNLRALIAERAGRSLLDVKGLQPVCWNVVIGDLVHNFADGLTIGAAFLTCSATVGWTVTASAVLHELPHEIADFMALLNGGMSLKQAFAYNFLSALSAVLGTIIILALGDTLSDKDVSIVLLLGSGSFIFIALSELLPEALV----VTHAVSEKGAVAVMCS-------------QLLKLGSFLLGAILIGIPLLVDQHCDAAHEGHDH 552          
BLAST of mRNA_H-paniculata_contig8395.16401.1 vs. uniprot
Match: A0A6H5KN39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN39_9PHAE)

HSP 1 Score: 315 bits (807), Expect = 1.240e-91
Identity = 218/551 (39.56%), Postives = 306/551 (55.54%), Query Frame = 3
Query:   93 FEYISVYGVD-AGMHQLEVSPAGSGSSLSFEEDSLSFMVVSTATADEEGLESAEEAAESAWEDFESGAQYTTDVSSGGTATLSDSVVYRLDLATSNNPVILTVSVPIEESGAFALFLEHGSEEFSVSVADPFGEVLVASAVEEGESGHEDHDHXXXXXXXXXXXXXXXXXXXXGNSSATATQWTNALLASLAISLCSLVGIGLVANRKVAHNIDLSYACLVAAGALLATSLMHIVPEALEGLEEEFEGNLHDIGLRTGLALLGGIFFGVVIHVMLAAEHSHNLSSTDHVHHVHDRDVQHGAAANVN----DSELSRGRTTSSAPSATAIAPLVSVAAVPSKNLDSIINAAKDRDFGDLKGLHPVCWTVIAGDLVHNFADGITIGASFISCSPTIGWTVTAAAILHELPHEVADFMALINGGMTVLQACAFNFLSALSAIIGVIVILALHDSLTSAQVATLLLFGGGSFLFIALSELLPEALLPTPTATPVMSNNDGVTDGTNMLKPPRSGMWKGPQLKKIVSFVFGALLIGIPLLWDEHCVA----EGHDH 1718
            FE  +VY ++ AG H +   P  +       E +L+FM+V  A+AD+EGLE AEE AE+AW+ F  G +  T ++ G TA    +VVY+  L  S    I+ V   + ++GA+AL LEHG  E S ++  P G   VA++V EG                 XXXXXXXXXXXX   + +  +W  A++A+      S  GI L+ ++++A+ IDLS+A + A GA+L  +L+HI+PE+ E  E+  E  LHD+G+ TG+ +L GI   ++I  +  A HSH                  GA A       D   SRG TT + P                +NL  ++   K R   D KGL P+CW VI GD VH+F  G TIGA+F+SC  T+GWT+TA+ ++HE+P E+ADF+AL+NGGM++ QA  +N  S + AI+G ++IL L D  T+ Q+A +LL G GSF+FI L+ELLPEAL  T              DG  +          G  L+K+ SF FGAL+IGIPL++  HC A    EGHDH
Sbjct:   40 FEAAAVYSLEEAGTHSVIAVPGEAF------EGTLAFMLVPAASADDEGLEGAEEDAEAAWDAFMDGEEDATVLAFGETAIPDATVVYQTTLDES----IVVVPAEVTDAGAYALLLEHGGGEVSTALVSPSG-TAVAASVSEG--------------MEEXXXXXXXXXXXXXGDTVSGAKWAQAMVATCIACFASFAGIFLLISKRIANGIDLSHAYMFATGAILTAALIHIIPESFERFEDA-ELGLHDLGIHTGVTMLAGITASIIIRAVCTAGHSHT-----------------GAPATAKVVGADGSQSRGPTTPTIP----------------ENLWELVQQRKGRALFDFKGLKPICWNVIVGDAVHSFTCGFTIGAAFLSCGSTMGWTITASTLIHEVPSEMADFVALLNGGMSIKQALTWNLASGIPAILGAVLILGLGDQFTTFQIAIILLLGAGSFIFIGLTELLPEALSST-------------VDGKGL----------GDSLRKLGSFAFGALVIGIPLMFHAHCHADEGHEGHDH 508          
BLAST of mRNA_H-paniculata_contig8395.16401.1 vs. uniprot
Match: D7FRW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW4_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 9.230e-89
Identity = 202/542 (37.27%), Postives = 288/542 (53.14%), Query Frame = 3
Query:   93 FEYISVYGVD-AGMHQLEVSPAGSGSSLSFEEDSLSFMVVSTATADEEGLESAEEAAESAWEDFESGAQYTTDVSSGGTATLSDSVVYRLDLATSNNPVILTVSVPIEESGAFALFLEHGSEEFSVSVADPFGEVLVASAVEEGESGHEDHDHXXXXXXXXXXXXXXXXXXXXGNSSATATQWTNALLASLAISLCSLVGIGLVANRKVAHNIDLSYACLVAAGALLATSLMHIVPEALEGLEEEFEGNLHDIGLRTGLALLGGIFFGVVIHVMLAAEHSHNLSSTDHVHHVHDRDVQHGAAANVN----DSELSRGRTTSSAPSATAIAPLVSVAAVPSKNLDSIINAAKDRDFGDLKGLHPVCWTVIAGDLVHNFADGITIGASFISCSPTIGWTVTAAAILHELPHEVADFMALINGGMTVLQACAFNFLSALSAIIGVIVILALHDSLTSAQVATLLLFGGGSFLFIALSELLPEALLPTPTATPVMSNNDGVTDGTNMLKPPRSGMWKGPQLKKIVSFVFGALLIGIPLLWDEHCVA 1703
            FE  +VY ++ AG H +   P          E +L+FM+V  A+AD EGL  AEE AE+AW+ F  G +  T ++SG T     +VVY+  L  S    I+ V   + ++GA+AL LEHG  E S ++  P G  + AS  E  +   E+                          + +  +W  A++A+      S VGI L+ N+++A+ +DLS+A + A GA+L  SL+HIVPE+ E  E+  E  L+D+G+ TG+ +L GI   V+I  +  A HSH                  GA A       D   SRG TT + P                 NL  ++   K R   D KGL P+CW VI GD VH+F  G TIGA+F+SC  T+GWT+TA+ ++HE+P E+ADF+AL+NGGM++ QA  +N +S + AI+G ++ILAL D  T+ Q+A +LL G GSF+FI L+ELLPEAL  T              DG  +          G  ++K+ SF FGAL+IGIPL++  HC A
Sbjct:   52 FEAAAVYVLEEAGTHSVIAVPGEDF------EGTLAFMLVPAASADYEGLAGAEEDAEAAWDAFMDGEEDATVLASGETVIPDATVVYQTTLDES----IIVVPAEVTDAGAYALLLEHGGGEVSTALISPLGTAVAASVSEFMDEEEEEE-----------------------GDTVSGAKWAQAIVATCIACFTSFVGIFLLINKRIANGVDLSHAYMFATGAILTASLIHIVPESFERFEDS-ELGLYDLGIHTGVTMLAGITASVIIRAVCTAGHSHT-----------------GAPATAKVVEADGGQSRGPTTPTIPD----------------NLLELVEQRKGRALFDFKGLKPICWNVIVGDAVHSFTCGFTIGAAFLSCGSTMGWTITASTLIHEVPSEMADFVALLNGGMSIKQALTWNLVSGIPAILGAVLILALGDQFTNFQIAIILLLGAGSFIFIGLTELLPEALSLT-------------MDGKGL----------GDSIRKLGSFAFGALIIGIPLMFHAHCHA 503          
BLAST of mRNA_H-paniculata_contig8395.16401.1 vs. uniprot
Match: D8LNP7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP7_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 7.550e-87
Identity = 187/443 (42.21%), Postives = 255/443 (57.56%), Query Frame = 3
Query:  390 LTVSVPIEESGAFALFLEHGSEEFSVSVADPFGEVLVASAVEEGESGHEDHDHXXXXXXXXXXXXXXXXXXXXGNSSATATQWTNALLASLAISLCSLVGIGLVANRKVAHNIDLSYACLVAAGALLATSLMHIVPEALEGLEEEFEGNLHDIGLRTGLALLGGIFFGVVIHVMLAAEHSHNLSSTDHVHHVHDRDVQHGAAANVNDSELSRGRTTSSAPSATAIAPLVSVAAVPSKNLDSIINAAKDRDFGDLKGLHPVCWTVIAGDLVHNFADGITIGASFISCSPTIGWTVTAAAILHELPHEVADFMALINGGMTVLQACAFNFLSALSAIIGVIVILALHDSLTSAQVATLLLFGGGSFLFIALSELLPEALLPTPTATPVMSNNDGVTDGTNMLKPPRSGMWKGPQLKKIVSFVFGALLIGIPLLWDEHCVAEGHDH 1718
            + + V + ++GA+AL  EHGS+E   ++    G+VLV ++ EEG+                     XXXXXXX   SATA QW NA+LA++ +SLCS  GI  + N+KVA+ I LS+    A+GALL  SL+HIVPE+LEG+  E++ +LHD GL  GLA+LGGI F ++IH +L + H                            + L+                                   K+R   DLKGL PVCW VIAG+LVHNFADG+TIGA+F++C  ++GWT+TA+ +LHE+P E+ADF+AL+ GGM++ QA  FNFLSAL+ ++G +VIL+L   L+ A V+ +LL G GSF+FIAL+ELLP AL      T   S+  G   G  M            Q+KK+ SFV GA LIG  L++D+HC AEGHDH
Sbjct:    1 MMIPVDVVDTGAYALLFEHGSDEVGTALVSESGDVLVGTS-EEGDEXX------------------XXXXXXXXXXSATAAQWGNAILATVIVSLCSFTGILTIINQKVANAIGLSHTFTFASGALLTASLLHIVPESLEGIAAEYD-HLHDAGLWAGLAILGGIGFSILIHALLESGHXXXXXXXXXXXXXXXXXXXXXXXXXAGTAPLAL--------------------------------TDKERSLFDLKGLKPVCWNVIAGELVHNFADGVTIGAAFLTCGSSMGWTITASTVLHEIPQELADFIALLAGGMSLKQAFLFNFLSALTCVLGAVVILSLRSQLSDADVSVILLLGSGSFIFIALTELLPGAL----EVTKAESDKAG---GAVMCN----------QMKKLGSFVLGAALIGGALIFDQHCEAEGHDH 374          
BLAST of mRNA_H-paniculata_contig8395.16401.1 vs. uniprot
Match: D7FLV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV2_ECTSI)

HSP 1 Score: 293 bits (749), Expect = 1.350e-85
Identity = 175/369 (47.43%), Postives = 238/369 (64.50%), Query Frame = 3
Query:  678 SLVGIGLVANRKVAHNIDLSYACLVAAGALLATSLMHIVPEALEGLEEEFEGNLHDIGLRTGLALLGGIFFGVVIHVMLAAEHSHNLSSTDHVHHVHDRDVQHGAA----ANVNDSE-------LSRGRTTSSAP---SATAIAPLVSVAAVPSK------NLDSIINAAKDRDFGDLKGLHPVCWTVIAGDLVHNFADGITIGASFISCSPTIGWTVTAAAILHELPHEVADFMALINGGMTVLQACAFNFLSALSAIIGVIVILALHDSLTSAQVATLLLFGGGSFLFIALSELLPEALLPTPTATPVMSNNDGVTDGTNMLKPPRSGMWKGPQLKKIVSFVFGALLIGIPLLWDEHCVA--EGHDH 1718
            S  G+ +V N++VA++I LS+A + A+GALL  +L+HI+PEA+EGL+  ++ NLHD+GL   L +L G+F  +VIH ++ + HSH+ +   H H   +  V+ G      A V+D         L+ G   S+ P   S  A+     V   PS       NL ++I   + R   D+KGL PVCW V+ GDLVHNFADG+TIGA+F++CS TIGWTVTA+A+LHELPHE+ADFMAL+NGGM++ QA A+NFLSALSA++G I+IL+L D+L+   V+ +LL G GSF+FIALSELLPEAL      T  +S    V    +             QL K+ SFV GA+LIG+PLL+D+HC A  EGHDH
Sbjct:    5 SFAGLLVVVNKRVAYSIGLSHAFIFASGALLTAALLHIIPEAMEGLDSSYD-NLHDLGLYASLTVLSGLFVSIVIHGLMESGHSHSPNEA-HSHGGGEETVRPGGGNGHHARVSDDASTMMPLGLAEGDKVSAWPGGNSPQAVQIQADVTQPPSPAESSTDNLRALIAEREGRSLLDVKGLQPVCWNVVIGDLVHNFADGVTIGAAFLTCSATIGWTVTASAVLHELPHEIADFMALLNGGMSLKQAFAYNFLSALSAVLGTIIILSLGDTLSDKDVSIVLLLGSGSFIFIALSELLPEAL----AVTHAVSEKGAVAMMCS-------------QLLKLGSFVLGAILIGLPLLFDQHCDAAHEGHDH 354          
BLAST of mRNA_H-paniculata_contig8395.16401.1 vs. uniprot
Match: K3WNM1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WNM1_GLOUD)

HSP 1 Score: 141 bits (356), Expect = 9.980e-32
Identity = 112/387 (28.94%), Postives = 189/387 (48.84%), Query Frame = 3
Query:  384 VILTVSVPIEESGAFALFLEHGS-EEFSVSVADPFGEVLVASAVEEGESGHEDHDHXXXXXXXXXXXXXXXXXXXXGNSSATATQWTNALLASLAISLCSLVGIG-LVANRKVAHNIDLSYACLVAAGALLATSLMHIVPEALEGLEEEFEGNLHDIGLRTGLALLGGIFFGVVIHVMLAAEHSHNLSSTDHVHHVHDRDVQHGAAANVNDSELSR--GRTTSSAPSATAIAPLVSVAAVPSKNLDSIINAAKDRDFGDLK----GLHPVCWTVIAGDLVHNFADGITIGASFISCSPTIGWTVTAAAILHELPHEVADFMALINGGMTVLQACAFNFLSALSAIIGVIVILALHDSLTSAQVATLLLFGGGSFLFIALSELLPEAL 1520
            V+  V++ IEE G FAL ++H + +E+++ + D  G V V S V  G    E  +                        +A+ + W   + A   +++ S++GI  L+    +   +  ++  L +AGAL  T+++HI+PE++E     F      + L      + G    +V+ ++L     H   +    HH H             D E  +    TT S    T+  P    +A+    +D++   +  +    LK     + PV + ++ GDL HNF DG+ I  +F++C   +G  VTA+AILHE P E+ADF+ LI+ G T  QA  FNF+SALS+ +G I+IL+   ++T+  +  LL FG G+ ++I+ ++LLP  L
Sbjct:  102 VLTAVNLTIEEPGHFALHMQHNAVKEYAMRIMDHQG-VAVDSLVLLGSDESESSE------------------TTKATRTASGSVWIKTMGAVAIVTIISVIGIFFLLVKASLLEKLMDAFVAL-SAGALFGTAILHILPESIE-----FHSEYGQMNLTICTVFIAGFMIAMVVEMLLELFIGHFTDTGVEGHHHHQVPAS-------GDKEAMKMVSPTTPSQQERTSHQPFTDASAM---EMDTVGRDSSPQSPWSLKVEWTKIKPVAYIILIGDLFHNFVDGVLIATAFLACDDALGIAVTASAILHEAPQEIADFVVLIDAGFTKFQAVTFNFISALSSFLGAIIILS-SITVTNETMGLLLGFGAGTLVYISATDLLPRVL 452          
BLAST of mRNA_H-paniculata_contig8395.16401.1 vs. uniprot
Match: A0A0P1AM43_PLAHL (Serine threonine protein phosphatase 2a n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AM43_PLAHL)

HSP 1 Score: 144 bits (362), Expect = 4.030e-31
Identity = 122/380 (32.11%), Postives = 190/380 (50.00%), Query Frame = 3
Query:  390 LTVSVPIEESGAFALFLEHGS-EEFSVSVADPFG-EVLVA-SAVEEGESGHEDHDHXXXXXXXXXXXXXXXXXXXXGNSSATATQWTNALLASLAISLCSLVGIGLVANRKVAHNIDLSYACLVAAGALLATSLMHIVPEALEGLEEEFEGNLHDIGLRTGLALLGGIFFGVVIHVMLAAEHSHNLSSTDHVHHVHDRDVQHGAAANVNDSELSRGRTTSSAPSATAIAPLVSVAAVPSKNLDSIINAAKDRDFGDLKGLHPVCWTVIAGDLVHNFADGITIGASFISCSPTIGWTVTAAAILHELPHEVADFMALINGGMTVLQACAFNFLSALSAIIGVIVILALHDSLTSAQVATLLLFGGGSFLFIALSELLPEAL 1520
            +TV++ ++E+G +AL ++H +  EF + V D  G EV VA S  E  E   E                           +ATA  W N L+A   +++ S+VGI L+  R       +     ++AGAL   + +HI+PE++E      + N         L+++  + F V + V +A E   +L   D   H HD    H  A  V D E  +   T       A        ++ S+N  S+   +   D+  +K   P+ + ++ GDL HNF DG+ I  +F++C  ++G +VTA+A+LHELP E ADF+ L++ G T  QA  FNFLSALSA +G IV+LA    +T+  +  LL  G G+ ++IA ++LLP  L
Sbjct:  120 MTVNLVVDEAGYYALHMQHDAVTEFGMQVLDAAGDEVAVALSLAEVAEENAETR----------------------SARNATAAVWINTLVAVAIVTILSIVGIFLLIFRVKFSTKLMDAMIALSAGALFGAAFLHILPESIEFYSAYGQMNFT-------LSMMFTVGFVVAMVVEMALELWVSLVQ-DGESHTHD----HHPATIVLDHETGKQNVTPETGEYNA----ADTVSLSSQNETSVSVFSLKVDWQTIK---PMAYIILLGDLFHNFVDGVLIATAFLACDDSLGISVTASAVLHELPQEFADFIILVDSGFTPFQAVLFNFLSALSAFVGAIVVLAAVP-VTNETMGLLLAVGSGTLVYIAGTDLLPGVL 457          
BLAST of mRNA_H-paniculata_contig8395.16401.1 vs. uniprot
Match: K3WD59_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WD59_GLOUD)

HSP 1 Score: 138 bits (347), Expect = 4.370e-30
Identity = 129/480 (26.88%), Postives = 208/480 (43.33%), Query Frame = 3
Query:  348 VYRLDLATSNNPVILTVSVPIEESGAFALFLEHGSEEFSVSVADPFGEVLVASAVEEGESGHEDHDHXXXXXXXXXXXXXXXXXXXXGNSSATATQWTNALLASLAISLCSLVGIGLVANRKVAHNIDLSYACLVAAGALLATSLMHIVPEALEGLEEEFEGNLHDIGLRTGLALLGGIFFGVVIHVMLAAEHSHNLSSTDHVHHVHDRDVQHGAAANVNDSELSRGRTTSSAPSATA-----------------IAPLVSVAAVPSKNLDSIINAAKDR-----------DFGDLKGLHPVCWTVIAGDLVHNFADGITIGASFISCSPTIGWTVTAAAILHELPHEVADFMALINGGMTVLQACAFNFLSALSAIIGVIVILALHDSLTSAQVATLLLFGGGSFLFIALSELLPEALLPTPTATPVMSNNDGVTDGTNMLKPPRSGMWKGPQLKKIVSFVFGALLIGIPLLWDEHCVA 1703
            +YR++ A+  N   + V +PI  +G + LF EH + +  V++     E   ASA+++        +                        +  A  W   ++ASL ISL S+VG+ +++  K    + + Y    AAG LL   + H+ PE  E L++  E  +  + +  G+ L   I  GV  H+MLA+    + S  D   H H            +  ELS   TT S  S  +                 +A    +A  P      +++++                  L+ + PV W    GD  H F DG+ +  +F SCS ++GW V    +LHE+PH V DF   +  GM+V QA + NFL++L++++GVI++LA   ++++  +  LL  G G+ LFI L+ELLP  L               V D  ++L                  F+ G +LIG+ +L D HC A
Sbjct:  141 LYRVEFASQENSECVHVKLPIAMAGHYMLFTEHDAHDVGVTMLFAPKE---ASALQD--------ERIVSVATCITGCPVPAPPVSDLAFTTRAQSWVGPIVASLVISLTSIVGVVILSFDKGRVEVIVEYMTSFAAGCLLGVVVFHLYPEGSEYLDDVGEWVM-GVFVLVGIVLSMSIEAGV--HMMLASFGVDHCS--DGHSHGHXXXXXXXTMDQKDPRELSPQSTTPSGHSHASHHXXXXXXXXXXXXXXXVALEEGIATQPLSESARLLDSSTGERHHHKQSFWTTHIRPLQFIDPVAWITAIGDFFHAFTDGVVLAVAFKSCSASLGWAVALGIVLHEVPHRVGDFFIFLKAGMSVPQALSVNFLASLASLVGVIILLA-SGAVSNHTLGVLLAIGTGALLFIGLTELLPPML--------------AVRDRQSVLL-------------HFAWFIVGCVLIGLSVLEDTHCDA 576          
BLAST of mRNA_H-paniculata_contig8395.16401.1 vs. uniprot
Match: A0A329SF33_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SF33_9STRA)

HSP 1 Score: 122 bits (307), Expect = 8.150e-25
Identity = 110/380 (28.95%), Postives = 178/380 (46.84%), Query Frame = 3
Query:  390 LTVSVPIEESGAFALFLEHGS-EEFSVSVADPFG-EVLVASAVEEGESGHEDHDHXXXXXXXXXXXXXXXXXXXXGNSSATATQWTNALLASLAISLCSLVGIGLVANRKVAHNIDLSYACLVAAGALLATSLMHIVPEALEGLEEEFEGNLHDIGLRTGLALLGGIFFGVVIHVMLAAEHSHNLSSTDHVHHVH-DRDVQHGAAANVNDSELSRGRTTSSAPSATAIAPLVSVAAVPSKNLDSIINAAKDRDFGDLKGLHPVCWTVIAGDLVHNFADGITIGASFISCSPTIGWTVTAAAILHELPHEVADFMALINGGMTVLQACAFNFLSALSAIIGVIVILALHDSLTSAQVATLLLFGGGSFLFIALSELLPEAL 1520
            +TV++ ++E+G +A  ++H + EEF + V D  G EV VA  + E +   E                           S TA+ W   + A             L+  R       +     ++AGAL   + +H++PE++E   E  + +L        L+++  I F V + V +A E   ++   +   H H    ++  + AN     LS      S    T      +   +    + S+   +   D+  +K   P+ + ++ GDL HNF DG+ I  +F++C  ++G +VT +AILHELP E ADF+ L+  G T  QA  FNFLSALSA IG IV+LA    +T+  +  LL  G G+ ++IA ++LLP  L
Sbjct:  191 MTVNLVVDEAGYYAFHMQHNAIEEFGMQVLDAEGQEVGVALTLAEEQQDEE----------------------TPSARSTTASVWAKTMAAVAIXXXXXXXXXXLLILRINVLTKVMDAMIALSAGALFGAAFLHVLPESIEFYSEYGQMDLT-------LSMMFTIGFVVAMVVEMALELWVSIVGGESHTHAHLPTSMRLSSPANA----LSEAAGKQSGTPETGDYNAENTPTLSRGKMTSVSTFSLKVDWHTIK---PMAYIILLGDLFHNFVDGVLIATAFLACDDSLGVSVTVSAILHELPQEFADFIILVESGFTPFQAVLFNFLSALSAFIGAIVVLAAVP-VTNETMGLLLAVGSGTLVYIAGTDLLPGVL 533          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8395.16401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLW4_ECTSI2.470e-11844.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L662_9PHAE6.030e-11645.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN39_9PHAE1.240e-9139.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRW4_ECTSI9.230e-8937.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNP7_ECTSI7.550e-8742.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLV2_ECTSI1.350e-8547.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3WNM1_GLOUD9.980e-3228.94Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A0P1AM43_PLAHL4.030e-3132.11Serine threonine protein phosphatase 2a n=1 Tax=Pl... [more]
K3WD59_GLOUD4.370e-3026.88Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A329SF33_9STRA8.150e-2528.95Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8395contigH-paniculata_contig8395:2469..9330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score394.4
Seed ortholog evalue8.8e-107
Seed eggNOG ortholog2880.D7FLW4
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.cellular zinc ion homeostasis
EggNOG OGsCOG0428@1,KOG2693@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size3898
Cds size1698
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8395.16401.1prot_H-paniculata_contig8395.16401.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8395 4640..9301 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931054.594585-UTR-H-paniculata_contig8395:2468..46391622931054.594585-UTR-H-paniculata_contig8395:2468..4639Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8395 2469..4639 -
1691481569.153198-UTR-H-paniculata_contig8395:2468..46391691481569.153198-UTR-H-paniculata_contig8395:2468..4639Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8395 2469..4639 -
1622931054.6641693-UTR-H-paniculata_contig8395:9301..93301622931054.6641693-UTR-H-paniculata_contig8395:9301..9330Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8395 9302..9330 -
1691481569.2103155-UTR-H-paniculata_contig8395:9301..93301691481569.2103155-UTR-H-paniculata_contig8395:9301..9330Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8395 9302..9330 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931054.6067305-CDS-H-paniculata_contig8395:4639..50111622931054.6067305-CDS-H-paniculata_contig8395:4639..5011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8395 4640..5011 -
1691481569.1636817-CDS-H-paniculata_contig8395:4639..50111691481569.1636817-CDS-H-paniculata_contig8395:4639..5011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8395 4640..5011 -
1622931054.6203656-CDS-H-paniculata_contig8395:5328..60041622931054.6203656-CDS-H-paniculata_contig8395:5328..6004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8395 5329..6004 -
1691481569.175651-CDS-H-paniculata_contig8395:5328..60041691481569.175651-CDS-H-paniculata_contig8395:5328..6004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8395 5329..6004 -
1622931054.6360729-CDS-H-paniculata_contig8395:7925..83371622931054.6360729-CDS-H-paniculata_contig8395:7925..8337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8395 7926..8337 -
1691481569.1863186-CDS-H-paniculata_contig8395:7925..83371691481569.1863186-CDS-H-paniculata_contig8395:7925..8337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8395 7926..8337 -
1622931054.6490889-CDS-H-paniculata_contig8395:9063..93011622931054.6490889-CDS-H-paniculata_contig8395:9063..9301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8395 9064..9301 -
1691481569.1971216-CDS-H-paniculata_contig8395:9063..93011691481569.1971216-CDS-H-paniculata_contig8395:9063..9301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8395 9064..9301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8395.16401.1

>prot_H-paniculata_contig8395.16401.1 ID=prot_H-paniculata_contig8395.16401.1|Name=mRNA_H-paniculata_contig8395.16401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=566bp
MIRPVGTVAVVVLVGLQVTESFEYISVYGVDAGMHQLEVSPAGSGSSLSF
EEDSLSFMVVSTATADEEGLESAEEAAESAWEDFESGAQYTTDVSSGGTA
TLSDSVVYRLDLATSNNPVILTVSVPIEESGAFALFLEHGSEEFSVSVAD
PFGEVLVASAVEEGESGHEDHDHDEDHDEDHDEDHDEEETSEDGNSSATA
TQWTNALLASLAISLCSLVGIGLVANRKVAHNIDLSYACLVAAGALLATS
LMHIVPEALEGLEEEFEGNLHDIGLRTGLALLGGIFFGVVIHVMLAAEHS
HNLSSTDHVHHVHDRDVQHGAAANVNDSELSRGRTTSSAPSATAIAPLVS
VAAVPSKNLDSIINAAKDRDFGDLKGLHPVCWTVIAGDLVHNFADGITIG
ASFISCSPTIGWTVTAAAILHELPHEVADFMALINGGMTVLQACAFNFLS
ALSAIIGVIVILALHDSLTSAQVATLLLFGGGSFLFIALSELLPEALLPT
PTATPVMSNNDGVTDGTNMLKPPRSGMWKGPQLKKIVSFVFGALLIGIPL
LWDEHCVAEGHDHSH*
back to top

mRNA from alignment at H-paniculata_contig8395:2469..9330-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8395.16401.1 ID=mRNA_H-paniculata_contig8395.16401.1|Name=mRNA_H-paniculata_contig8395.16401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6862bp|location=Sequence derived from alignment at H-paniculata_contig8395:2469..9330- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGCGTTGAGAATCGAACCAAATACGCCATGATTCGACCCGTCGGCACC GTGGCAGTGGTTGTGCTGGTGGGCCTGCAGGTTACAGAGTCATTCGAGTA TATCTCCGTTTATGGCGTAGACGCCGGCATGCACCAACTGGAGGTCAGCC CTGCAGGTAGTGGAAGCAGCCTCTCCTTCGAAGAGGATTCGCTTTCATTC ATGGTCGTGTCAACCGCCACGGCGGATGAGGAAGGGCTAGAGTCGGCGGA AGAGGCAGCAGAGTCGGGTGAGCCCTCATCCACCGCCTGTACCCCCTAAA CAGACTGGTGTTTGCATACAAGAAAGTTATGTAATGTGTGTGCTGCGGTT TACAAAACCTTGCACATATCGTCCTGACTAGGCGTATTCCAGCAAGTGCT TGCGGGAGCTTGTGACGGGGCGCGCTTGCAAGCCTCTCCCCACGAAACGA CGCTTATGATCGCCCTCTACATTTCGAGTTGTTTGCTAGTGACAGCCAGA CTCACTGCACGTGTTCGAGGGTTCCATTTAGAGGCATAAAAACTGCTGAT AATGTTCTGATACATGAGGCACGTATGTTGAAATACCCCCACACACCACA GATGCAAAACTTGTGCCAACGGCCCGAATGCGCGCTTAGATACTCCGACA CTGGCATATCAGCGTTCACCGCATCTAACGAACCTCCTTAGATTCCTAGG CTTGCTTCATGAGAAAGATACACGGAGAATCGACGAGAGGATTGTGTCGT CGATTGTGGCGTTCCGTTCCTTTTAAAATAGGTATTATTGTTTACTTGAG CGACTTGTGCCTAACTTCACCCGCGGACATGCAGAGATGGTAGAGCTCTA AAAAACAAAATTAGGCCATGAATGTTTGACCCTACAAAAGGCAGCAGCGC CTCTGAAACAACGCTCTTCTGATGTGTATGGACGCGTACTTCAGTACAAA GAGGAGGTATATATAAATCTATATCCCCCCGTCCCTCTTACAGCCTGGGA AGACTTCGAGAGCGGCGCTCAATACACTACCGACGTTTCCTCCGGCGGCA CGGCCACCCTCTCCGATTCCGTGGTCTACAGACTAGATCTCGCGACAAGC AACAACCCGGTTATCCTGACTGTCTCCGTCCCAATCGAGGAGTCCGGCGC GTTCGCGCTCTTTCTCGAGCACGGATCCGAAGAGTTTTCAGTTTCCGTAG CTGATCCCTTCGGCGAAGTGCTGGTGGCTTCGGCCGTGGAGGAAGGAGAG TCGGGCCATGAAGATCATGATCACGACGAAGATCATGACGAAGATCACGA CGAGGATCATGATGAGGAGGAGACCAGCGAAGATGGTAACTCTTCGGCGA CGGCGACGCAGTGGACCAACGCGCTTCTCGCTTCACTCGCCATATCGTTA TGCAGGTACATCTGCATATCCTCAACTAATTAAATCGTAATTATTTGGTT GTAATAATCAGGGCGAGACGTATTGTTAGAAATCCTTGGTGGTCGTAAGA GCTGCAACGGCGTTTTTCGGTCTTCTCCGGTGCAGCTTTCGCCTACTTGC ATATTTTTTCGAGATGCCTGTGCACCAACGCGGCGCAGCTGTGAAAACGA AAGTGAAGGGTTCGAGCAGATTTACATGACCCTAACAGACCGAGCGAGAG CGATAATAACAGGTTTTTCAACGGGCCAGAGTCTTGTGGGGTCTTGTCCT CAGTAATGTTTATCCCAGTTCGTGAGGGGAGTTCTGCCCGAGCTCTTTGT CAAAGTTCCATGATTGACTCTTACCGTCTTTGCCAAATCGATTGCCAGGT GATAATGCAACCCCCTCCACTCTAACCCGAACCCTAACTATCAAACCCTC ATTGCTCGTTTTCCAATAAGAACCGTGTGTTGTGCCTTGATCGTCAAAAC CGTTTTGAATCTGGAGATATCTTGCTCGTTCTGATTGTTGTAAAGTGGTC AAGTCCAGCAGGTTGAAGAACGTAAGAAAAGGCAAAGAAGCACCATAGCC ACAGAGTCCCAAAACACCACGCGAAGAAGGCGTCCAACAGAGAGACATGG AGAGACACAGAGGGAGGAAGTATGCACGCGCTTGTGCAGGCGATAATCCT TGCTCAGTCTCACACATCGTGTAGTGGGGAAGCTACAGCAACTTACATTC ATTAGCAATAAAGAAAAAAGGCCGTTTTTCACTGTGTTCGATTTGGCCGA AAATACGTGTTCTTCATAGTTACACTGGCTTTATCTAAACCAATTTATGG GGGTTAGATAATCAAAAGCTCCGACTCGGGCTATGTTTTTCTTTCTGGCG GAAAGATGGTCGCAATCAACGTGTTATGTCTGATCGTCACACTTTGCAAT GCAGCTTCTTCGGTCGCACGAAAGGGATTCTTTGGTCTTGCCTCAGCCCT AACGTTTGAAATCCTGGGCCTTAGCTTGTTCGTTCTTGTGCTCACAACGA CCAAAGTCGTTGCTGAACAAGTTTTGGCGCTTTTCGGGGACATTTTCGTT ACTTTTTTCTATTTTTAAAGCGTAAAAAACGCGACTAGCGCGCAGAGATT GTCCGTCCAGCCCAAAATTGAGTTCTTGGCAAGTCCATGAAACATGCGTT TTTTTCTCTCAATAGTAGTCGACCTTGCACCTAGCCCTTCGCGTGCCAAC ATGAACCCCGGCAGCATCTACGATGGCCCACACGATGCGTCGTTCGACGG TGCGGCAATGGACGAAAGGGAAGGTGAAGGGTATGGGCAGGTACATCCTA CCGTGTCAATTGTGGAATTTCGGCAACGAACTGGACGATTAGTCTCTACT AATCTAGCTCGAACGATAGGGACACAAATTCCGTCGAAAATGGAAGACTT CAGTTTCGTCACGTACACATTTTATTGAAGTTGTATTGCTCCTTGAATCT ATGGTCCATTCCGAGAAGGTTGTGTGTCTTACCGAGACTACAGGCGACTA AGCATTCGTACAATGAATGGATGAAGGTGTTGTTAACCCAGGTCTCCGCA AATTAACAGCACGCAATGTAGTACAACCAACCAGGCGACGCAAGGCTACG GATTGGCGAAAGTCTTGGGCAGCAAGCGCACAGAAAAACTACCCGAGTGT TTTCTCAAGTTTCCATCTTGAAGAGATTGACTTGAACATGTTTGTTTTCT TTCTAAAAAATGTTGACTAAACAATCCGAAACTCCAAAGCCTGAGGAGCG AACTCGTATCAATCGCCAAAGCCACCCCCCTCCTGTGTTGTTCGCTGTTA TCGATACGAGAACCTAGTCCCCTCCCCTCCCCACATGCGCTACCGCCGCC GCCGCTCCCTTGCGCGTTACGCTCAGCTTGGTGGGGATAGGACTGGTCGC AAACCGCAAAGTGGCCCATAATATCGATCTCTCTTACGCGTGTCTGGTCG CTGCGGGCGCACTCCTGGCGACATCCCTTATGCACATCGTTCCCGAAGCC TTGGAAGGACTGGAAGAAGAGTTCGAAGGTAACCTTCACGACATCGGCCT GCGTACGGGCCTAGCGCTCCTCGGCGGAATATTCTTTGGCGTCGTGATAC ACGTCATGTTGGCTGCCGAGCACTCTCACAACCTCTCTTCGACCGACCAC GTCCACCATGTCCATGACCGTGATGTACAACACGGTGCGGCGGCAAATGT GAATGATTCCGAGCTCTCCCGTGGGCGGACTACTTCTTCTGCTCCCTCTG CAACGGCGATTGCTCCGCTTGTATCTGTGGCCGCGGTGCCATCCAAAAAC CTGGACTCCATCATCAATGCTGCGAAGGACAGGGACTTTGGGGACCTGAA GGGCTTGCATCCGGTGTGCTGGACGGTGATCGCCGGGGACCTGGTGCACA ACTTTGCTGATGGGATCACGATCGGGGCGTCGTTTATTAGCTGCAGCCCG ACCATCGGGTGGACTGTTACCGCCGCGGCTATCTTGCACGAACTTCCGCA TGAAGTGGCAGACTTTATGGCCCTCATCAACGGTGGAATGACGGTTCTCC AGGTAGGTTGCTGGCGTGCGCGCGTGGGGGGCGGGTGGTGCGGTGCGGTG CGGTGCGCCGTGTCAGTGTGTTTTAGGGGTTGCAGATGTGCAGTCTTGGT AGCAAGACGTTCAGCGCGCGGGTGTGCGCAGCTTGTCTGGAGTAACAACA TGCGTAACTCAGTAGATTCCAGCGTTATAGTTAGTTTGGCAAATACGTTT GAATCCACCGACCGTTTTTAACGACGGATCCCCCCAACTCTTGAAACTTT CTAAAACACATTTTGCACTGTGATATTACCGGCTCTTCATCGCCCATCAA CTCTCTGTCGCACTCGCAGGCGTGTGCGTTCAACTTTTTGTCCGCCCTCT CGGCTATCATCGGGGTAATCGTAATCCTGGCACTGCACGACAGCCTCACG TCCGCCCAGGTGGCCACTCTACTGCTGTTCGGCGGGGGCTCTTTTTTGTT TATCGCCCTGTCTGAGCTACTACCAGAGGCGCTGCTCCCCACCCCGACAG CGACCCCTGTCATGAGTAACAACGACGGCGTCACTGATGGTACAAACATG CTGAAGCCCCCCCGTTCGGGTATGTGGAAGGGCCCCCAGCTGAAGAAGAT AGTGTCGTTTGTGTTTGGAGCTTTGCTGATCGGAATCCCTCTACTATGGG ACGAGCACTGCGTGGCTGAAGGACACGACCACTCACACTAATGGCATACG CGGTGCGGTGCGGTGCAATGCAGTGGTTGCATCTGCAACGATTGACATAT ATATATTCATGTGTTCGGTATCTCGGTTAGGGTGAGTGGTTTATGGGGCT TGATCTTTATTTTCAGGACTTGTACTGCAGATCTGAATGTTGAGTTTTTT TGTTGCCATTAATAAGGTGCTCTTGGGAGAGGGTTGGGATTTAGAGGGGG GGGAGCGGTTATTGCGACGATATTAATCGATTTGGTCACTTTTGATACAA GACCTCTGCTTCCGGGGGAAGTCGAGGATGTTGGCTATTTCTTCTGGAAT TCATGTTTTACACCCTTGTTGTATTTTTTGCGAATGCCCCGGTTCTGTGT TGGCGTTTCGACTGCCCGCCCTCACCCGCGCCCAGCGGTTGATGTGTCGG AGATATTACACGCAGCGATTTTCGGATTTTGTGGTGTGATTTTTTGTGTT GATGGCCCCTCTGCACGTTCGAAAAAGCCATTCCAAGAGTACAGCGGTAT GACATTATGGTGTACACGTGCATGGGGATACGTTTTTAGATGTTGGTGCG GACCTGCTCGTGACTTTCTGGCGGACAATTCCCTAACACGTCTTTGTGTG GAGGTAAACATGCGGGTCGGTTGCCGTGGCGTATGGATAGAGCAGGCTAG AAGGTCAACCCCCTAACTTTGAAAAACGATTTTCAAGTCAATATGGCAAA TGCAAAGCACTGGGTAATTAATCTCTTGGTCCTCTTCATGTAGTCGATAA CGAGGGACCTCCATACTTGGGGCACGCTTGGAAGGAAATCTCGTGTACTG CTTGCCGTAGATAAAATACTTTCACCACCGTCATCTGCTCATGATCGGGA GGAGGGAAATGTCGACAGGGGTGTGTGTTCGAAAACGCTACATTTTCATG TTTTTCACGTAGTATTGGGCATGTGATTCGTTTTGTACTGTACAATACTT CTCCACTTCATTTACAGTATGCAGAATATGAGCTGACCTGACACTTTTCC CCCTGATTTGAATGAATGCAGGCGTTGTTTTTGTGCCTTGTTCGGTCTGG CGGTATCACGTGTATGAGTTCGATGTATCTCGGGAAGCGTATTGGCTGAC TCTTTTTCTGCGTGAAAAATACGGGGGGAGCTTGATACCGCACGCCGATT TTCGGGTCATTTGTCCCAATTGTTTATTAAGAAAAACGAAAGGTTAGAGT TAGACGCAGAAGAGTCGTGGGATTGTATTCGGTTGTTATTGAAGGTCGGA ATCAGCTCGATCGATAGGCCTCACGCATGGCCCTGTGTAATCAGTTGGTA TTGTTGTGCCCAAGAGAGTCTTGATCCTCAAAACCCGGTGGGTAGAGCGT TTTGGTCAAGTGCGGTTCACCTGTCGATCATTTAACTTTTTGCCCCAAGG CGTTCCGTGTATGCTACAAAATATGCTTCAGTTGGAATTTACTTTGTTTG AGGTACATGACAGTTCTTCCGTCGTTGTTTCGTCTACACCCTGCCCGCTA GGTAGGCTGGAGGACGGCAGTAGTCACTATAGATCATCCCATGTACCAAT ACCCTGTCCAAGGGGATTTTTAAACATCTGTACTGTGGTGGGTGTTGGGC AACAGCGATAACCGCTTGTTGTGGATTAGTATCACTTGGCAACCCCTCTT TATGCCGTTGTTTACATGATATGATATTCCCTCGGTAGGTATTTTTTCAG CTATATTCTCGAAAACTGCGGCGGTGCTCATGAAGCTGCCAGTTGGGCCG CATTCGTTGGTTGGAAAGATTCAGGATCTATTAGTCATTCGATGCACCGG CGCTTTCGACGATAGTGCAAGGTTTTCCTTCCTCGAGAAAATGGCGTTTG AATAAAATGTTGTCGAGGCTATGGATGCTGTAAACTGCGGTTTGGATATT TTGCTTTGCGCGAATTGTCGCTATTACCTGATGGCCTTTGTGAGTCACGA AATATACTACATGCTGTCTAGGTACAATTTTTTCGATGTATACACACTGT GGACTTATGTGCCATGCAGTTGCTTTTTTTACGGCAGGAAGCGTTGTTGT AGTTGCACTAGATATTATCCTAGCTTTTAACTCTGTGGTTGCGCAAGAAT AGCACCACGAACGGGTCGTATCCGGAACCAAAATCTATACTTTTCGCGTG TAGTAATCCGTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8395:2469..9330-

>mRNA_H-paniculata_contig8395.16401.1 ID=mRNA_H-paniculata_contig8395.16401.1|Name=mRNA_H-paniculata_contig8395.16401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3396bp|location=Sequence derived from alignment at H-paniculata_contig8395:2469..9330- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTCGACCCGTCGGCACCGTGGCAGTGGTTGTGCTGGTGGGCCTGCA
GGTTACAGAGTCATTCGAGTATATCTCCGTTTATGGCGTAGACGCCGGCA
TGCACCAACTGGAGGTCAGCCCTGCAGGTAGTGGAAGCAGCCTCTCCTTC
GAAGAGGATTCGCTTTCATTCATGGTCGTGTCAACCGCCACGGCGGATGA
GGAAGGGCTAGAGTCGGCGGAAGAGGCAGCAGAGTCGGATGATTCGACCC
GTCGGCACCGTGGCAGTGGTTGTGCTGGTGGGCCTGCAGGTTACAGAGTC
ATTCGAGTATATCTCCGTTTATGGCGTAGACGCCGGCATGCACCAACTGG
AGGTCAGCCCTGCAGGTAGTGGAAGCAGCCTCTCCTTCGAAGAGGATTCG
CTTTCATTCATGGTCGTGTCAACCGCCACGGCGGATGAGGAAGGGCTAGA
GTCGGCGGAAGAGGCAGCAGAGTCGGCCTGGGAAGACTTCGAGAGCGGCG
CTCAATACACTACCGACGTTTCCTCCGGCGGCACGGCCACCCTCTCCGAT
TCCGTGGTCTACAGACTAGATCTCGCGACAAGCAACAACCCGGTTATCCT
GACTGTCTCCGTCCCAATCGAGGAGTCCGGCGCGTTCGCGCTCTTTCTCG
AGCACGGATCCGAAGAGTTTTCAGTTTCCGTAGCTGATCCCTTCGGCGAA
GTGCTGGTGGCTTCGGCCGTGGAGGAAGGAGAGTCGGGCCATGAAGATCA
TGATCACGACGAAGATCATGACGAAGATCACGACGAGGATCATGATGAGG
AGGAGACCAGCGAAGATGGTAACTCTTCGGCGACGGCGACGCAGTGGACC
AACGCGCTTCTCGCTTCACTCGCCATATCGTTATGCAGCCTGGGAAGACT
TCGAGAGCGGCGCTCAATACACTACCGACGTTTCCTCCGGCGGCACGGCC
ACCCTCTCCGATTCCGTGGTCTACAGACTAGATCTCGCGACAAGCAACAA
CCCGGTTATCCTGACTGTCTCCGTCCCAATCGAGGAGTCCGGCGCGTTCG
CGCTCTTTCTCGAGCACGGATCCGAAGAGTTTTCAGTTTCCGTAGCTGAT
CCCTTCGGCGAAGTGCTGGTGGCTTCGGCCGTGGAGGAAGGAGAGTCGGG
CCATGAAGATCATGATCACGACGAAGATCATGACGAAGATCACGACGAGG
ATCATGATGAGGAGGAGACCAGCGAAGATGGTAACTCTTCGGCGACGGCG
ACGCAGTGGACCAACGCGCTTCTCGCTTCACTCGCCATATCGTTATGCAG
CTTGGTGGGGATAGGACTGGTCGCAAACCGCAAAGTGGCCCATAATATCG
ATCTCTCTTACGCGTGTCTGGTCGCTGCGGGCGCACTCCTGGCGACATCC
CTTATGCACATCGTTCCCGAAGCCTTGGAAGGACTGGAAGAAGAGTTCGA
AGGTAACCTTCACGACATCGGCCTGCGTACGGGCCTAGCGCTCCTCGGCG
GAATATTCTTTGGCGTCGTGATACACGTCATGTTGGCTGCCGAGCACTCT
CACAACCTCTCTTCGACCGACCACGTCCACCATGTCCATGACCGTGATGT
ACAACACGGTGCGGCGGCAAATGTGAATGATTCCGAGCTCTCCCGTGGGC
GGACTACTTCTTCTGCTCCCTCTGCAACGGCGATTGCTCCGCTTGTATCT
GTGGCCGCGGTGCCATCCAAAAACCTGGACTCCATCATCAATGCTGCGAA
GGACAGGGACTTTGGGGACCTGAAGGGCTTGCATCCGGTGTGCTGGACGG
TGATCGCCGGGGACCTGGTGCACAACTTTGCTGATGGGATCACGATCGGG
GCGTCGTTTATTAGCTGCAGCCCGACCATCGGGTGGACTGTTACCGCCGC
GGCTATCTTGCACGAACTTCCGCATGAAGTGGCAGACTTTATGGCCCTCA
TCAACGGTGGAATGACGGTTCTCCAGCTTGGTGGGGATAGGACTGGTCGC
AAACCGCAAAGTGGCCCATAATATCGATCTCTCTTACGCGTGTCTGGTCG
CTGCGGGCGCACTCCTGGCGACATCCCTTATGCACATCGTTCCCGAAGCC
TTGGAAGGACTGGAAGAAGAGTTCGAAGGTAACCTTCACGACATCGGCCT
GCGTACGGGCCTAGCGCTCCTCGGCGGAATATTCTTTGGCGTCGTGATAC
ACGTCATGTTGGCTGCCGAGCACTCTCACAACCTCTCTTCGACCGACCAC
GTCCACCATGTCCATGACCGTGATGTACAACACGGTGCGGCGGCAAATGT
GAATGATTCCGAGCTCTCCCGTGGGCGGACTACTTCTTCTGCTCCCTCTG
CAACGGCGATTGCTCCGCTTGTATCTGTGGCCGCGGTGCCATCCAAAAAC
CTGGACTCCATCATCAATGCTGCGAAGGACAGGGACTTTGGGGACCTGAA
GGGCTTGCATCCGGTGTGCTGGACGGTGATCGCCGGGGACCTGGTGCACA
ACTTTGCTGATGGGATCACGATCGGGGCGTCGTTTATTAGCTGCAGCCCG
ACCATCGGGTGGACTGTTACCGCCGCGGCTATCTTGCACGAACTTCCGCA
TGAAGTGGCAGACTTTATGGCCCTCATCAACGGTGGAATGACGGTTCTCC
AGGCGTGTGCGTTCAACTTTTTGTCCGCCCTCTCGGCTATCATCGGGGTA
ATCGTAATCCTGGCACTGCACGACAGCCTCACGTCCGCCCAGGTGGCCAC
TCTACTGCTGTTCGGCGGGGGCTCTTTTTTGTTTATCGCCCTGTCTGAGC
TACTACCAGAGGCGCTGCTCCCCACCCCGACAGCGACCCCTGTCATGAGT
AACAACGACGGCGTCACTGATGGTACAAACATGCTGAAGCCCCCCCGTTC
GGGTATGTGGAAGGGCCCCCAGCTGAAGAAGATAGTGTCGTTTGTGTTTG
GAGCTTTGCTGATCGGAATCCCTCTACTATGGGACGAGCACTGCGTGGCT
GAAGGACACGACCACTCACACTAAGCGTGTGCGTTCAACTTTTTGTCCGC
CCTCTCGGCTATCATCGGGGTAATCGTAATCCTGGCACTGCACGACAGCC
TCACGTCCGCCCAGGTGGCCACTCTACTGCTGTTCGGCGGGGGCTCTTTT
TTGTTTATCGCCCTGTCTGAGCTACTACCAGAGGCGCTGCTCCCCACCCC
GACAGCGACCCCTGTCATGAGTAACAACGACGGCGTCACTGATGGTACAA
ACATGCTGAAGCCCCCCCGTTCGGGTATGTGGAAGGGCCCCCAGCTGAAG
AAGATAGTGTCGTTTGTGTTTGGAGCTTTGCTGATCGGAATCCCTCTACT
ATGGGACGAGCACTGCGTGGCTGAAGGACACGACCACTCACACTAA
back to top