mRNA_H-paniculata_contig8389.16396.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8389.16396.1
Unique NamemRNA_H-paniculata_contig8389.16396.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8389.16396.1 vs. uniprot
Match: D8LEN9_ECTSI (Membrane acyl-CoA binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN9_ECTSI)

HSP 1 Score: 320 bits (821), Expect = 8.570e-95
Identity = 168/252 (66.67%), Postives = 195/252 (77.38%), Query Frame = 2
Query:    2 IELKKKKVNERLEAERGVEEAKAHPFPREVRFWTVKDVGYFLHSLGLGQYRRAFEEAAVDGEFLLALDASDCADVLGVSHALHSKKLFLAINKLRPLSADEMRKKVVVEREENADNTRGNDRPDVQTVMSQVRNGRMKRVEESLEMGFSVDTKDEHGNTPLIVACQ-------------------NVNLQMSEMLLRRGAKINHRNGGGNTALHYAMAYEPNGLLGEMLISNGADDSIENKDSLSCYDGLGG 700
            I  K K + E++EA+  +EEA AHPFP EVRFWT +DVG+FL +LGL QYR AFEEAAVDG+FLLALDA+DCADVLGV HALHSKKLFLAI+KLRPL A+E RKK VVEREE AD  RG+  PDV+TV SQVRNGR+KRVE+SLE GFS+DT DEHGNT L+VACQ                   ++  Q+ EMLLRRGA +NHRNG GNT LHYAMAY+  G+LGEMLIS G DD++ N+D LSCYDGLGG
Sbjct: 2518 IGRKNKVLQEKMEAQEEMEEANAHPFPPEVRFWTKEDVGFFLTTLGLRQYRAAFEEAAVDGDFLLALDANDCADVLGVEHALHSKKLFLAIDKLRPLGAEERRKKAVVEREEFADQNRGDTAPDVETVFSQVRNGRLKRVEDSLEKGFSIDTTDEHGNTALLVACQAGFAKQWTGDALKPADAVYHIR-QLCEMLLRRGADVNHRNGRGNTPLHYAMAYDTQGVLGEMLISRGGDDTVTNRDGLSCYDGLGG 2768          
BLAST of mRNA_H-paniculata_contig8389.16396.1 vs. uniprot
Match: A0A7S1UK14_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK14_9STRA)

HSP 1 Score: 221 bits (562), Expect = 4.510e-67
Identity = 115/221 (52.04%), Postives = 153/221 (69.23%), Query Frame = 2
Query:   53 VEEAKAHPFPREVRFWTVKDVGYFLHSLGLGQYRRAFEEAAVDGEFLLALDASDCADVLGVSHALHSKKLFLAINKLRPLSADEMRKKVVVEREENADNTR------GNDRPDVQTVMSQVRNGRMKRVEESLEMGFSVDTKDEHGNTPLIVACQNVNLQMSEMLLRRGAKINHRNGGGNTALHYAMAYEPNGLLGEMLISNGADDSIENKDSLSCYDGLG 697
            V++A   PFP +VR WTV+DV  +L +L L QY+RAFE+A+VDG FL+ L  +D ++VLG+ H LH +K+  A  KL PL+ +E  K  VV  E++A+  R      G   P +  V SQ RNGR+KRVEESL +GF +D +D  GNT L+VA Q  N +++ +L+ RGA +NH+N  GNTALHYAMAY+P G++GE LI  GADDS+EN   LSCYDGLG
Sbjct:    3 VKDAMTLPFPEDVRLWTVEDVSRWLDTLRLSQYKRAFEDASVDGNFLIELRETDMSEVLGMEHKLHIRKVVTARAKLMPLNEEEQSKLNVVREEKSAELVRAGQAAPGEGVPKLDAVFSQARNGRIKRVEESLNLGFPIDAEDAKGNTLLMVAVQQTNQKLTAILISRGADLNHQNAAGNTALHYAMAYDPEGVMGEFLIEKGADDSLENVVGLSCYDGLG 223          
BLAST of mRNA_H-paniculata_contig8389.16396.1 vs. uniprot
Match: A0A7S3LK43_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LK43_9STRA)

HSP 1 Score: 220 bits (560), Expect = 9.350e-66
Identity = 111/222 (50.00%), Postives = 158/222 (71.17%), Query Frame = 2
Query:   47 RGVEEAKA---HPFPREVRFWTVKDVGYFLHSLGLGQYRRAFEEAAVDGEFLLALDASDCADVLGVSHALHSKKLFLAINKLRPLSADEMRKKVVVEREENADNTRGNDR---PDVQTVMSQVRNGRMKRVEESLEMGFSVDTKDEHGNTPLIVACQNVNLQMSEMLLRRGAKINHRNGGGNTALHYAMAYEPNGLLGEMLISNGADDSIENKDSLSCYDGL 694
            + +EEA+     PFP ++R W+V+DVG +L +L L QY++AF EA+VDG+FL+ L   D  D+LG+ H+LH +K+ +   KLRPL+  E RKK +VE+EE A   R       P+V+TV SQ+RNGR  RVE++L++G+  +  D HGN+ LI+A QN+N ++ ++LL RGA INH+N  GNTA+HYAM+Y+P G LGE LI  GADD++EN+  LS YDG+
Sbjct:   77 KAIEEAQKLLKKPFPNDIRKWSVEDVGRWLDTLSLSQYKKAFSEASVDGDFLMELRPEDMRDILGMGHSLHVQKVIVTREKLRPLNEMEERKKFMVEQEELARQNRDQPSEPIPEVETVFSQIRNGRYNRVEKALDLGYEANDTDSHGNSALIIAAQNLNKRICDLLLNRGANINHQNSQGNTAMHYAMSYDPEGTLGEFLIGRGADDTLENQLGLSPYDGI 298          
BLAST of mRNA_H-paniculata_contig8389.16396.1 vs. uniprot
Match: A0A7S2FRG1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FRG1_9STRA)

HSP 1 Score: 220 bits (560), Expect = 4.540e-65
Identity = 120/235 (51.06%), Postives = 163/235 (69.36%), Query Frame = 2
Query:    8 LKKKKVNERLEAERGVEE----AKAHPFPREVRFWTVKDVGYFLHSLGLGQYRRAFEEAAVDGEFLLALDASDCADVLGVSHALHSKKLFLAINKLRPLSADEMRKKVVVEREENADNTR-GNDRPDVQTVMSQVRNGRMKRVEESLEMGFSVDTKDEHGNTPLIVACQNVNLQMSEMLLRRGAKINHRNGGGNTALHYAMAYEPNGLLGEMLISNGADDSIENKDSLSCYDGLG 697
            LKK+++   L+A R  EE    +KA PFP+EVR W+V DV  +L +L L QY +AF+EA+VDGEFLL L   D A VLG+ H LH +K+ LA +KLRPLS  E   KV V REE+A   R G   PD++TV SQ RN R++R+E+SL   F VD++D+ GNT L++  QN N ++ E++L RG+ INH+N  GN+ALH+ MAY+ +G LGE LI  GA+D++ N D L+ YDG+G
Sbjct:  119 LKKQQLE--LDAARNAEEQAKQSKAEPFPKEVRLWSVTDVCRWLDTLSLQQYTKAFKEASVDGEFLLELREEDLAQVLGMEHKLHVRKVILARDKLRPLSEQEKMMKVAVVREEDAQKDRAGTGVPDLETVFSQARNSRLRRLEDSLNADFPVDSQDDKGNTLLLIGAQNCNRKLMELVLARGSNINHQNAHGNSALHFVMAYDTDGTLGEFLIQKGANDTLANVDGLTPYDGIG 351          
BLAST of mRNA_H-paniculata_contig8389.16396.1 vs. uniprot
Match: A0A7S1XSI4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSI4_9STRA)

HSP 1 Score: 214 bits (544), Expect = 4.410e-63
Identity = 116/216 (53.70%), Postives = 148/216 (68.52%), Query Frame = 2
Query:   59 EAKAHPFPREVRFWTVKDVGYFLHSLGLGQYRRAFEEAAVDGEFLLALDASDCADVLGVSHALHSKKLFLAINKLRPLSADEMRKKVVVEREENADNTRGNDR---PDVQTVMSQVRNGRMKRVEESLEMGFSVDTKDEHGNTPLIVACQNVNLQMSEMLLRRGAKINHRNGGGNTALHYAMAYEPNGLLGEMLISNGADDSIENKDSLSCYDGLG 697
            EA   PFP E+  W+V DV  +L +L LG Y++AFEEA VDG FLL L   D  +VLG+ H LH +K+ +A  KLRPL   E+ KK VV REE AD  RG+     P +  V SQ RNGR+KR+EESL +GF+ + +D +GNT LIVA Q  N ++ EML+ RGA +NH+N  GNTALH+AMAY+  G +GE LI+ GADDS+EN   L+ YDGLG
Sbjct:  103 EAAKEPFPEEILLWSVHDVSRWLDTLSLGVYKQAFEEARVDGPFLLELRDEDMMEVLGIEHKLHVRKIVVAREKLRPLDEQELIKKDVVTREEAADAGRGDAAGGIPPLDVVFSQCRNGRIKRLEESLLVGFNKEAEDVNGNTLLIVAAQQTNKKVIEMLVNRGANVNHQNKVGNTALHFAMAYDTEGAIGEYLITKGADDSLENLSGLTPYDGLG 318          
BLAST of mRNA_H-paniculata_contig8389.16396.1 vs. uniprot
Match: A0A7S1Y181_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y181_9STRA)

HSP 1 Score: 221 bits (562), Expect = 1.110e-62
Identity = 116/224 (51.79%), Postives = 154/224 (68.75%), Query Frame = 2
Query:   44 ERGVEEAKAHPFPREVRFWTVKDVGYFLHSLGLGQYRRAFEEAAVDGEFLLALDASDCADVLGVSHALHSKKLFLAINKLRPLSADEMRKKVVVEREENADNTR------GNDRPDVQTVMSQVRNGRMKRVEESLEMGFSVDTKDEHGNTPLIVACQNVNLQMSEMLLRRGAKINHRNGGGNTALHYAMAYEPNGLLGEMLISNGADDSIENKDSLSCYDGLG 697
            E  V++A   PFP +VR WTV+DV  +L +L L QY+RAFE+A+VDG FL+ L  +D ++VLG+ H LH +K+  A  KL PL+ +E  K  VV  E++A+  R      G   P +  V SQ RNGR+KRVEESL +GF +D +D  GNT L+VA Q  N +++ +L+ RGA +NH+N  GNTALHYAMAY+P G++GE LI  GADDS+EN   LSCYDGLG
Sbjct:  389 EEEVKDAMNLPFPEDVRLWTVEDVSRWLDTLRLSQYKRAFEDASVDGNFLIELRETDMSEVLGMEHKLHIRKVVTARAKLMPLNEEEQSKLNVVREEKSAELVRAGQAAPGEGVPKLDAVFSQARNGRIKRVEESLNLGFPIDAEDAKGNTLLMVAVQQTNQKLTAILISRGADLNHQNAAGNTALHYAMAYDPEGVMGEFLIEKGADDSLENVVGLSCYDGLG 612          
BLAST of mRNA_H-paniculata_contig8389.16396.1 vs. uniprot
Match: A0A6V1RC42_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RC42_HETAK)

HSP 1 Score: 209 bits (533), Expect = 1.840e-62
Identity = 113/229 (49.34%), Postives = 154/229 (67.25%), Query Frame = 2
Query:   11 KKKKVNERLEAERGVEEAKAHPFPREVRFWTVKDVGYFLHSLGLGQYRRAFEEAAVDGEFLLALDASDCADVLGVSHALHSKKLFLAINKLRPLSADEMRKKVVVEREENADNTRGNDRPDVQTVMSQVRNGRMKRVEESLEMGFSVDTKDEHGNTPLIVACQNVNLQMSEMLLRRGAKINHRNGGGNTALHYAMAYEPNGLLGEMLISNGADDSIENKDSLSCYDGLG 697
            K+  + E   A+R  +EA+   FP ++  WTV+DVG +L +L L QY +AF + +VDG+FL+ L  SD   +LGVSH LH +K+ +   +L PLSA E  K   ++ EE A+  R  + PD  TV SQVRN R+KRVEE+L +G   + +DE GN+ L+VA QN+N +M E+LL RGA +NH+N  GNTALH+AM Y+P G LGE LI +GADD IEN   L+ YDG+G
Sbjct:   16 KRAALAEAQRAKRDADEAELRAFPEDLALWTVEDVGRWLTTLNLPQYVQAFRDGSVDGKFLMDLRDSDIQQMLGVSHPLHVRKITVNRERLLPLSAQEQGKMSRIKEEEKANQDR--ELPDKDTVFSQVRNNRIKRVEEALALGVDPNLEDERGNSLLMVAAQNLNRRMCELLLARGASVNHQNAVGNTALHFAMTYDPEGTLGEFLIMHGADDGIENGQGLTAYDGIG 242          
BLAST of mRNA_H-paniculata_contig8389.16396.1 vs. uniprot
Match: A0A7S4ECN9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECN9_9STRA)

HSP 1 Score: 223 bits (569), Expect = 3.910e-62
Identity = 119/220 (54.09%), Postives = 150/220 (68.18%), Query Frame = 2
Query:   41 AERGVEEAKAHPFPREVRFWTVKDVGYFLHSLGLGQYRRAFEEAAVDGEFLLALDASDCADVLGVSHALHSKKLFLAINKLRPLSADEMRKKVVVEREENADNTR-GNDRPDVQTVMSQVRNGRMKRVEESLEMGFSVDTKDEHGNTPLIVACQNVNLQMSEMLLRRGAKINHRNGGGNTALHYAMAYEPNGLLGEMLISNGADDSIENKDSLSCYDGLG 697
            AE+  + +KA PFP E+R W+V DV  +L +L LGQY+ AF EA+VDG+FLL L   D   VLG+ H LH +K+ L  +KLRPLS  +  KK +V REE+A+  R G   P    V SQ RNGR+KR+ ESL +GF VD +DE GNT L+ A QN+NL+M EML+ R   +NHRN  GNTALH+AMAY+  G L E LI  GADD+IEN    +CYDGLG
Sbjct:  635 AEQEAKRSKAEPFPPEMRLWSVSDVARWLDTLSLGQYKDAFREASVDGDFLLELREEDLVQVLGMEHKLHVRKVILGRDKLRPLSETDHVKKALVLREEHAERERDGVAMPATDVVFSQCRNGRVKRLGESLNLGFPVDKEDEKGNTLLMCAAQNLNLKMCEMLINRNCDVNHRNSSGNTALHFAMAYDSEGTLAEYLIQQGADDTIENAVGCTCYDGLG 854          
BLAST of mRNA_H-paniculata_contig8389.16396.1 vs. uniprot
Match: H3GH99_PHYRM (SAM domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH99_PHYRM)

HSP 1 Score: 226 bits (575), Expect = 5.820e-62
Identity = 124/231 (53.68%), Postives = 154/231 (66.67%), Query Frame = 2
Query:   23 VNERLEAERGVEEAKAHPFPREVRFWTVKDVGYFLHSLGLGQYRRAFEEAAVDGEFLLALDASDCADVLGVSHALHSKKLFLAINKLRPLSADEMRKKVVVEREENADNTRGNDRP-------DVQTVMSQVRNGRMKRVEESLEMGFSVDTKDEHGNTPLIVACQNVNLQMSEMLLRRGAKINHRNGGGNTALHYAMAYEPNGLLGEMLISNGADDSIENKDSLSCYDGL 694
            V  + E E  +   K  P P E+R WTV DVG +L SL L QY+ AF E AVDGEFL+ L A D A+VLGVSH LH +KL  A NKL PL+A E  +   V  E NA   RG +         +V TV SQ RNGRMKR+ ESL+ GF VD++D+ GNT L++ACQNVN +M E+L+ R A +NHRN  GNT LH+AMAY+  G+LGE LI++GADD+IEN   L+ YDGL
Sbjct: 1938 VQRQREEEEALAPGKQQPLPEELRAWTVGDVGRWLDSLSLPQYKAAFSEGAVDGEFLIELRAEDMAEVLGVSHKLHVRKLLTARNKLLPLTAAERSQLDAVNHEANAARARGQEPAAGDEASLEVDTVFSQARNGRMKRLVESLDAGFPVDSEDDKGNTLLLLACQNVNQRMVELLVTRRANLNHRNAQGNTPLHFAMAYDGEGVLGEYLIAHGADDTIENNSGLTAYDGL 2168          
BLAST of mRNA_H-paniculata_contig8389.16396.1 vs. uniprot
Match: A0A3R7IFD5_9STRA (SAM domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IFD5_9STRA)

HSP 1 Score: 216 bits (551), Expect = 2.200e-61
Identity = 116/216 (53.70%), Postives = 149/216 (68.98%), Query Frame = 2
Query:   74 PFPREVRFWTVKDVGYFLHSLGLGQYRRAFEEAAVDGEFLLALDASDCADVLGVSHALHSKKLFLAINKLRPLSADEMRKKVVVEREENADNTRGNDRP---------DVQTVMSQVRNGRMKRVEESLEMGFSVDTKDEHGNTPLIVACQNVNLQMSEMLLRRGAKINHRNGGGNTALHYAMAYEPNGLLGEMLISNGADDSIENKDSLSCYDGL 694
            P P  +R WTV DVG +L SL L QY+ AF+E AVDGEFL+ L A D A+VLGVSH LH +KL +A NKL PL++ E  +   V  E NA   RG  +          +V+TV SQ RNGRMKR+ ESL+ GF +D++D+  NT L++ACQNVN +M E+L+ R A +NHRN  GNT LH+AMAY+  G+LGE LI++GADD+IEN   L+ YDGL
Sbjct:  359 PLPELLRSWTVDDVGRWLDSLSLPQYKAAFKEGAVDGEFLMELSAEDVAEVLGVSHKLHVRKLLIARNKLLPLTSAERTQLDAVNHEVNAARARGRGQEAAPGDDISLEVETVFSQARNGRMKRLVESLDAGFPIDSEDDKANTLLLLACQNVNQRMVELLVTRHANVNHRNAQGNTPLHFAMAYDGEGVLGEYLIAHGADDTIENNSGLTPYDGL 574          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8389.16396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEN9_ECTSI8.570e-9566.67Membrane acyl-CoA binding protein n=1 Tax=Ectocarp... [more]
A0A7S1UK14_9STRA4.510e-6752.04Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3LK43_9STRA9.350e-6650.00Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2FRG1_9STRA4.540e-6551.06Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1XSI4_9STRA4.410e-6353.70Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1Y181_9STRA1.110e-6251.79Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6V1RC42_HETAK1.840e-6249.34Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4ECN9_9STRA3.910e-6254.09Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
H3GH99_PHYRM5.820e-6253.68SAM domain-containing protein n=1 Tax=Phytophthora... [more]
A0A3R7IFD5_9STRA2.200e-6153.70SAM domain-containing protein n=3 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8389contigH-paniculata_contig8389:4886..9383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.3
Seed ortholog evalue2.4e-42
Seed eggNOG ortholog2880.D8LEN9
KEGG koko:K10408,ko:K10413
KEGG Pathwayko04145,ko04962,ko05016,ko05132,map04145,map04962,map05016,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147,ko04812
Exons4
Model size1159
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8389.16396.1prot_H-paniculata_contig8389.16396.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8389 5336..8168 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931053.896546-UTR-H-paniculata_contig8389:4885..53351622931053.896546-UTR-H-paniculata_contig8389:4885..5335Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8389 4886..5335 -
1691481568.7488732-UTR-H-paniculata_contig8389:4885..53351691481568.7488732-UTR-H-paniculata_contig8389:4885..5335Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8389 4886..5335 -
1622931054.0075305-UTR-H-paniculata_contig8389:8168..83161622931054.0075305-UTR-H-paniculata_contig8389:8168..8316Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8389 8169..8316 -
1691481568.829516-UTR-H-paniculata_contig8389:8168..83161691481568.829516-UTR-H-paniculata_contig8389:8168..8316Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8389 8169..8316 -
1622931054.0240204-UTR-H-paniculata_contig8389:9227..93831622931054.0240204-UTR-H-paniculata_contig8389:9227..9383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8389 9228..9383 -
1691481568.843499-UTR-H-paniculata_contig8389:9227..93831691481568.843499-UTR-H-paniculata_contig8389:9227..9383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8389 9228..9383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931053.922896-CDS-H-paniculata_contig8389:5335..55451622931053.922896-CDS-H-paniculata_contig8389:5335..5545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8389 5336..5545 -
1691481568.7619414-CDS-H-paniculata_contig8389:5335..55451691481568.7619414-CDS-H-paniculata_contig8389:5335..5545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8389 5336..5545 -
1622931053.9446309-CDS-H-paniculata_contig8389:7038..72211622931053.9446309-CDS-H-paniculata_contig8389:7038..7221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8389 7039..7221 -
1691481568.7769008-CDS-H-paniculata_contig8389:7038..72211691481568.7769008-CDS-H-paniculata_contig8389:7038..7221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8389 7039..7221 -
1622931053.9933617-CDS-H-paniculata_contig8389:8156..81681622931053.9933617-CDS-H-paniculata_contig8389:8156..8168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8389 8157..8168 -
1691481568.8135488-CDS-H-paniculata_contig8389:8156..81681691481568.8135488-CDS-H-paniculata_contig8389:8156..8168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8389 8157..8168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8389.16396.1

>prot_H-paniculata_contig8389.16396.1 ID=prot_H-paniculata_contig8389.16396.1|Name=mRNA_H-paniculata_contig8389.16396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
MRKKVVVEREENADNTRGNDRPDVQTVMSQVRNGRMKRVEESLEMGFSVD
TKDEHGNTPLIVACQNVNLQMSEMLLRRGAKINHRNGGGNTALHYAMAYE
PNGLLGEMLISNGADDSIENKDSLSCYDGLGGFT*
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mRNA from alignment at H-paniculata_contig8389:4886..9383-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8389.16396.1 ID=mRNA_H-paniculata_contig8389.16396.1|Name=mRNA_H-paniculata_contig8389.16396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4498bp|location=Sequence derived from alignment at H-paniculata_contig8389:4886..9383- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTGAGCTAAAAAAAAAGAAGGTGAACGAGCGGCTCGAAGCCGAACGAG GTGTGGAAGAGGCAAAAGCGCATCCATTCCCTAGGGAAGTAAGGTTTTGG ACCGTCAAAGACGTGGGCTACTTTCTCCACAGCCTTGGGCTTGGTCAGTA TCGAAGGTAAAACGAGGAAGTACGACACGCCGGGTGGGCTGTACCTTGAC GTCAACACTGGAAAAAAAAGGTTCATCCGCACACGTTGTTCTCCACCGAC CGAAAACAGATTACCATGAGTGTATCAGAGTAAAAACTCACCGAAAATGG AAATGGTTATTCGACACGCCGCTCAACCACAAAGTATTAACATTACTGTG TATCGTTTTTTGTTCGTCTTAAAAAGAAGCAATTCTTCCAGTACGTAACT TTTAACTGGCATGAGGTCAAACCTTGCTCGAGAACATGCAGCTTAGCTTC GCCCGAAATCAGACGTCTCCTACATTGATTTTTAATATGTAGGAATTGCC TTGCCTGGATTCTGTAATTTGTAGTTTAGACGCTATAGTACATACTGCGC AAGGCTTCACCGTCCTGTGTTCATGTATCTATGTCGTATTGTAATTTCTC TCTTTTCGTTAGCACGTGATTCGGCCAACGGTAGGGAGGCGAGTAGTTTG GCCTTTTGTTTTCAAGTGTTGGACCGCTTTGCCGAGCGGCTAAGCAAAAT GTATATTTCCCTCGTAAACAGCATAGCCATTTCGACCCTTTAGTTTATTC ATCGTTACGGATACCTGAATGTATGCCATTGAATGAATTTTGACGTTTTT TTGTTTTGTTTAGCCGCTTGGCGGAGCGGCGCTCGTTAACCCCCCCCCCC CCCCTCTACCGTAGCCCTGTTCATGTCGATTTCGCTTGTTTTTCTCTTCT TCTGGCACATGACGGAGTCTACATCTTGTCGGAAGGAGATTGTACAATGA CTCGTTGGTATGGTGCCACAATTTGAGCTTGATCACGAACTACGCTGTTT TTTTTCAAGTACATAGTGTTGCGTACTGTACTCTTGTACTGTCCCGCCGC ACTGTTCGCTCACTCAGAGCGTTCGAAGAAGCAGCCGTAGACGGAGAGTT CTTGCTGGCACTCGATGCCAGCGATTGCGCGGATGTTCTCGGGGTGAGCC ACGCTCTACACTCCAAGAAATTGTTCCTGGCGATCAACAAGCTAAGGCCT TTGAGTGCTGATGAAATGAGGAAGAAGGTGTGCGGGTGTGTGTGACTGCT ACATGCATTGAGCATGTACAAGCCGGTACATGGTGGGGGAGGGGTTAATT GGTGACGTTGCACGACATGGGGTGTAAGTGGTGATGGTGATGGTGGTGGA GTAGAGAGTAGAGGCAACAGTATTGTACTGACATTATATGGCGGGACGAA GCAAATCATTCCTCTTGCGCAATAATGAAAATAAATAACGCAGGACTATA GTATTGTGTTTCCATGTGCCGTGAGCTTGCGCTGGGTTTCTCCCTGTCCC TCTGTATTACTTGGCGTAATCTCTCTATTCCTCGCATAAGCCGTTGCTTG CTTTCATTGAATATCGCTTCCAGGTATCAATAACATCACACACGCATGAT AATGCGATTGGTCGTTATGGTAACTTTGTGACAAAAGCTTATAGGTATGT TCCAAACATTAGGATACTACCGTCACCATCTCCACCCCCTACCTCTTGAT CACGCCGAATGAATATGAAAAATTTCTCTTTCCATGGAAAATCCGAGTCG ATGTAGCAACAGAGCCGACCGCGAACGCACTGGTTATGGAAAAGAGGTCA TTTGCCAGAGTCCTACCGTACCGCGAACTGGTTCTGGTTCTGGTTCTGGC CGTGTGTAAAGGAGAACGACAGTCAGACACGGTCGTCAGAGGAGATAGTA TATTATATGTTATTGCGGGTCACTGTGTAAAAACGCTGTGGCAATATAAC GATCACTACACCGGAATTCGATTACAAAGTGATGAATCGCTTCCAATTAT CATTGAGAATATATATCTGAATACACCTAAACAATGATGAATCAACTGGT TGTTGTCCTAATATGTACGCGTCACGAGTTATAAAAGTCGCCCCCCCTAT CCCCCACCGTGCCCCCCATCATCCCTTGCCTCTCGACACACACGCACCGC CTACAACACTAGGTCGTAGTGGAGCGGGAAGAGAACGCAGATAATACTCG AGGTAACGACCGTCCGGACGTGCAGACGGTTATGAGCCAGGTTAGGAACG GCCGCATGAAGCGGGTCGAGGAGTCACTGGAAATGGGCTTCTCCGTCGAC ACGAAGGACGAGCATGGCAACACGCCCTTGATCGTGGCTTGTCAGGTACA AAACAGTCCCTATCTCAGCGCGTTATTCCTTTTTGATTCAGGAAATATTG CGTGTACCATGAACGTTTCAGTCACGGATGAAGCAAACGGATGGTGGCCG AGTAGCGCGCCAGGGGCTAATGAATCAGCATAGCGACACGCTATCAGATC TTGCGTGCTGAGAGCTGTTGTTGTAGAAACAAAGAGTAGTTAGATGATGA AATAACACATACACAGGGAGGGAGAGAGAGAGAGATAGAGACAGACAGAC AGACAGACAGACAGACAGAAAGCCAGATTGAAAAAAACAAAAAGAACGGA ACTTCTACTGCGTTTCAACTATGTACTTCATGAATTATAAAGACACCATA GATAATACGGCGATGAACGCCTTAGGGGGAACAGAAGGGGAGAAGAGCAA AAGGGAAACGGAATCCAACGGCTCGGGGGGTAGAGCTAGAGAGTCGATGT GCCATGAAGATACCTGTAGTCCTTAAATAGTATATATTTCAAGTTGTTTC CAATAGATGGTAGATTGGTATTCAAGCGAAGGGGTACCTTATGCTTTCGG CTTGTTTGACTCTCTTCTTGTGCTGAGACCTCTGCCTGTGAGTTTCAAGA GTCAAGACACGGCTACTACCACCGTCAATGGGGACTTCGTACCCTCGACA TGACATTATCGTGTTCCTCCTTTACTACATTCCAAAAGACGTTCCGAGGG AATCGGTACAATTTGGCAGGCAAGCTAGCTATGTAGATACAGACACCACG CCCAGGTGAGTATGAACTTTAGGTGAACCCCATAAAAATTGCAGAAACAG GTCAGACGATATTTGCAGGTCAAGGAAATTGCAGGTCTGATTCTATCAGA GAATGTTAGCTGAATGGTGTTGTTATGCTTTCCTTTTTTTAATATATGGA GTAGAGTACGGAGGATGGACTACAAGTGGGAGGAAATCGTTCCTGGTGAA AAGGACTAAAAGCATACGCTATTTGAGGATGCACGGATATTTAGAGCTTG TTTGATGTTATATTAATTTCAACCCCCCCCACCCCGCCTAGTGGTCAATT TGTTAGTAAGTATTCTTCCCCCCCCCCGGCCCCTATCGCCCCTCCCGAAA ATTGTTCACAAAAGTAAGTCAATCCTTCTATTCAATAAACTGAGCATACT TATGGACACGCGTTAAAACGAAGATTGATTGTCATCACCCCAACCATTTT GCTCGTACTTCAGTCACCCCTGGTGATATAATTTTGCTCATAAGCGCAAA CAATTGAACTTTGAAATCAGCTGCTGTATTTCCCCAACACATGGGCACGT CGGAGATGTTATGTGGGCTTTAGGGGGTATTAATTCAACTGACTGGCAGG GTTGACTTACAAATGAATTTTTTCAAGAGTGTCTGTCGTTCATTTGAAAA TTATTTTATATTTCATCTATCCACCCCCTCTCCATCAATCCTTCTCCTTG CCGGCTTTCATCCCACTTCCATTGAAAAAATATGTCAGAACGTGAACTTG CAAATGAGCGAAATGCTACTCCGGCGAGGGGCCAAGATAAACCACCGGAA CGGGGGAGGAAACACGGCTCTGCATTACGCCATGGCGTATGAACCCAATG GTCTGCTAGGGGAGATGCTGATATCAAACGGCGCGGACGACAGCATCGAA AACAAAGACAGCCTCAGCTGTTACGATGGCTTGGGCGGATTTACCTAGCC AAACAAGTATCTAGCCCACGTACTGTAGAGAGTAGAGAGGGAAATCAAGC GCAATGTCGGCCGTCCATTAAGAATTGTAAGATAGTATTTATATTTACAT TATGTACTTCTACAGTAAAGCTCTAGGCACTTGAGAAACAAAGTACATCA AGTAGGTGGTAGTAGTCTATAGTACTTTGGTTTGACAACGGATGAAAGAG GCGTTGCGACTGGACTTGGGACAAGGAGCTGCAGATTCACCACGGAGAAA CGACATGATGCAGATCTATGTGTCTTTGGGGCATGGATATGCCTTAGGGA GGATTTCGTTTCTGACGATGGTGTTCTGGTAATATTTCTTGAGTGAGCAA GGTTAGTTATGAGCGATACTGTAGATAATGCATAGGTTTTATGGTTGTTG CGGGCGCAACGGGTAGACAAATAAGCATCATATAATGTCTTAAGTTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig8389:4886..9383-

>mRNA_H-paniculata_contig8389.16396.1 ID=mRNA_H-paniculata_contig8389.16396.1|Name=mRNA_H-paniculata_contig8389.16396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig8389:4886..9383- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGAAGAAGATGAGGAAGAAGGTCGTAGTGGAGCGGGAAGAGAACGC
AGATAATACTCGAGGTAACGACCGTCCGGACGTGCAGACGGTTATGAGCC
AGGTTAGGAACGGCCGCATGAAGCGGGTCGAGGAGTCACTGGAAATGGGC
TTCTCCGTCGACACGAAGGACGAGCATGGCAACACGCCCTTGATCGTGGC
TTGTCAGGTCGTAGTGGAGCGGGAAGAGAACGCAGATAATACTCGAGGTA
ACGACCGTCCGGACGTGCAGACGGTTATGAGCCAGGTTAGGAACGGCCGC
ATGAAGCGGGTCGAGGAGTCACTGGAAATGGGCTTCTCCGTCGACACGAA
GGACGAGCATGGCAACACGCCCTTGATCGTGGCTTGTCAGAACGTGAACT
TGCAAATGAGCGAAATGCTACTCCGGCGAGGGGCCAAGATAAACCACCGG
AACGGGGGAGGAAACACGGCTCTGCATTACGCCATGGCGTATGAACCCAA
TGGTCTGCTAGGGGAGATGCTGATATCAAACGGCGCGGACGACAGCATCG
AAAACAAAGACAGCCTCAGCTGTTACGATGGCTTGGGCGGATTTACCTAG
AACGTGAACTTGCAAATGAGCGAAATGCTACTCCGGCGAGGGGCCAAGAT
AAACCACCGGAACGGGGGAGGAAACACGGCTCTGCATTACGCCATGGCGT
ATGAACCCAATGGTCTGCTAGGGGAGATGCTGATATCAAACGGCGCGGAC
GACAGCATCGAAAACAAAGACAGCCTCAGCTGTTACGATGGCTTGGGCGG
ATTTACCTAG
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