mRNA_H-paniculata_contig8381.16392.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8381.16392.1
Unique NamemRNA_H-paniculata_contig8381.16392.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8381.16392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8381contigH-paniculata_contig8381:6842..8772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1932
Cds size1929
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931053.5535204-CDS-H-paniculata_contig8381:6841..87701622931053.5535204-CDS-H-paniculata_contig8381:6841..8770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8381 6842..8770 +
1691481568.6242132-CDS-H-paniculata_contig8381:6841..87701691481568.6242132-CDS-H-paniculata_contig8381:6841..8770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8381 6842..8770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8381.16392.1prot_H-paniculata_contig8381.16392.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8381 6842..8770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8381.16392.1

>prot_H-paniculata_contig8381.16392.1 ID=prot_H-paniculata_contig8381.16392.1|Name=mRNA_H-paniculata_contig8381.16392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=643bp
HPIVGRADVGTDGGADNGKSNVSPSESPPPLYREPKHSCIFHSCPGRMTQ
EDWTASANSDGLGEDLPSVGCPRATEEICRPVRGLAADTTGVVQKGDSGR
CSFVDQESTVQTKFAVATAAQEQKQDEHPVNLERLTSTSAAPEQQQQILP
PHAQPGRSSQPPNFERSDSTPMALPPSDGEDACPEPDVVDSGAPAKHDPD
PTYDDIFGAGNGRRHNDGSGDIFSSGGGFRGKERSNTADFTDTVSYGGRR
RRLPPHRTKSLHRQRSLWSDSDDSNSTGGHDDDFLHTNFDSFDHDIDQTR
SSPPHGVGDGSDVRSIAAGDGRLLTKRTAAMSPVTWHDRGVMITDCEDNG
TSSCDSGFGLTAATNSARAAILQQSPVSTAPVTKTTSPRSAAGSPKHVAA
GDESSETATSRAELSRLLGAPALAPVACEAVVAAPVATEAGGVPTSAVNS
LVGKFSSLVDEVNTKSSGRIVVSGADTATTTASSSSSSSFSSTSACACAF
ASSSSPYSHISAQGIGTGAGAATPRRSAHRTRPGGSRVNSFVQIFNTASG
AHRVDVDGSSSSSSSSNKNGTGRSSSGSYMRRRPPLAAAKGMAVAKAKNV
TPPSGDVVHKEQARAAAASFTRRVVGGDGHRNLFSAMERSGGG
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mRNA from alignment at H-paniculata_contig8381:6842..8772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8381.16392.1 ID=mRNA_H-paniculata_contig8381.16392.1|Name=mRNA_H-paniculata_contig8381.16392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1931bp|location=Sequence derived from alignment at H-paniculata_contig8381:6842..8772+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCCGATAGTAGGCAGAGCAGATGTGGGTACCGATGGAGGTGCTGACAA
TGGTAAATCCAATGTTTCTCCCTCGGAGTCGCCCCCGCCCCTGTACAGGG
AACCAAAACATTCGTGTATCTTCCACTCGTGCCCTGGCCGTATGACTCAG
GAGGACTGGACGGCATCTGCCAACTCCGACGGACTGGGTGAGGACCTGCC
TAGCGTCGGCTGTCCTCGCGCTACTGAGGAGATCTGTCGACCTGTGAGAG
GTCTGGCGGCAGATACAACAGGGGTCGTTCAAAAAGGAGACTCGGGCCGT
TGCTCTTTTGTAGACCAAGAATCAACCGTACAGACGAAGTTTGCGGTAGC
TACTGCAGCGCAGGAGCAGAAGCAGGATGAACATCCAGTAAATCTCGAGC
GGCTAACGTCAACGTCGGCGGCACCTGAGCAGCAGCAGCAAATACTGCCT
CCGCACGCACAGCCCGGCCGCTCCTCGCAACCGCCAAATTTCGAGAGGTC
CGACAGCACGCCGATGGCTCTACCCCCGTCGGACGGCGAAGATGCGTGCC
CTGAGCCTGACGTCGTGGACAGCGGCGCCCCAGCGAAACATGACCCCGAC
CCCACGTACGATGACATATTCGGCGCCGGCAACGGGCGCAGGCACAATGA
TGGGAGTGGCGATATATTTTCCAGTGGCGGTGGGTTCAGGGGCAAGGAGA
GGAGCAACACCGCCGATTTCACTGACACCGTAAGTTATGGTGGGCGGCGG
CGGCGGCTGCCGCCTCATAGGACCAAGAGTCTGCATAGACAACGGAGCCT
CTGGAGCGACAGCGATGACAGTAATAGTACCGGCGGGCACGACGACGACT
TTTTGCACACCAACTTCGACAGTTTTGACCATGATATCGACCAAACCCGG
AGCAGTCCTCCGCATGGTGTTGGCGACGGTAGTGACGTCCGTAGTATCGC
TGCCGGCGATGGACGTCTGCTGACTAAGCGTACGGCTGCCATGTCTCCGG
TAACGTGGCACGACCGAGGGGTGATGATCACAGACTGCGAGGATAATGGG
ACTAGTAGCTGTGACAGTGGATTCGGTCTCACAGCAGCAACCAATTCAGC
GAGGGCAGCGATCTTACAACAGAGCCCGGTGAGCACAGCACCGGTGACGA
AGACAACTTCGCCTCGATCTGCGGCGGGCAGTCCTAAACATGTTGCGGCG
GGCGACGAGAGTTCTGAGACCGCGACCTCTAGAGCCGAACTGTCGCGGTT
ACTGGGAGCACCAGCGCTTGCTCCTGTAGCGTGTGAGGCGGTAGTAGCAG
CGCCCGTAGCTACGGAGGCGGGGGGGGTTCCAACAAGCGCCGTCAATAGC
CTGGTGGGGAAATTCTCTTCTCTGGTGGATGAGGTGAACACCAAATCGAG
CGGGCGGATTGTGGTCAGTGGTGCGGATACCGCCACCACCACAGCCTCTT
CCTCCTCCTCTTCCTCCTTCTCCTCCACTTCAGCCTGTGCTTGTGCCTTT
GCTTCCTCTTCGTCACCATACTCTCATATTTCTGCGCAGGGGATTGGCAC
CGGTGCCGGCGCTGCTACTCCACGGCGATCTGCCCACCGCACGAGGCCTG
GCGGATCGCGGGTCAACAGTTTTGTACAGATTTTCAACACCGCCAGCGGC
GCCCACAGGGTCGACGTCGACGGTAGCAGTAGCAGTAGCAGCAGCAGCAA
CAAGAACGGGACCGGACGCTCCTCGTCTGGGTCGTACATGCGTCGCCGGC
CTCCTCTGGCGGCGGCCAAGGGGATGGCAGTGGCAAAGGCGAAAAATGTA
ACGCCGCCATCCGGCGATGTCGTTCACAAGGAGCAGGCCCGTGCGGCAGC
TGCAAGTTTCACGCGGCGCGTGGTGGGTGGCGACGGTCATCGAAACCTTT
TTTCTGCGATGGAGAGGAGCGGCGGGGGTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig8381:6842..8772+

>mRNA_H-paniculata_contig8381.16392.1 ID=mRNA_H-paniculata_contig8381.16392.1|Name=mRNA_H-paniculata_contig8381.16392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3858bp|location=Sequence derived from alignment at H-paniculata_contig8381:6842..8772+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCCGATAGTAGGCAGAGCAGATGTGGGTACCGATGGAGGTGCTGACAA
TGGTAAATCCAATGTTTCTCCCTCGGAGTCGCCCCCGCCCCTGTACAGGG
AACCAAAACATTCGTGTATCTTCCACTCGTGCCCTGGCCGTATGACTCAG
GAGGACTGGACGGCATCTGCCAACTCCGACGGACTGGGTGAGGACCTGCC
TAGCGTCGGCTGTCCTCGCGCTACTGAGGAGATCTGTCGACCTGTGAGAG
GTCTGGCGGCAGATACAACAGGGGTCGTTCAAAAAGGAGACTCGGGCCGT
TGCTCTTTTGTAGACCAAGAATCAACCGTACAGACGAAGTTTGCGGTAGC
TACTGCAGCGCAGGAGCAGAAGCAGGATGAACATCCAGTAAATCTCGAGC
GGCTAACGTCAACGTCGGCGGCACCTGAGCAGCAGCAGCAAATACTGCCT
CCGCACGCACAGCCCGGCCGCTCCTCGCAACCGCCAAATTTCGAGAGGTC
CGACAGCACGCCGATGGCTCTACCCCCGTCGGACGGCGAAGATGCGTGCC
CTGAGCCTGACGTCGTGGACAGCGGCGCCCCAGCGAAACATGACCCCGAC
CCCACGTACGATGACATATTCGGCGCCGGCAACGGGCGCAGGCACAATGA
TGGGAGTGGCGATATATTTTCCAGTGGCGGTGGGTTCAGGGGCAAGGAGA
GGAGCAACACCGCCGATTTCACTGACACCGTAAGTTATGGTGGGCGGCGG
CGGCGGCTGCCGCCTCATAGGACCAAGAGTCTGCATAGACAACGGAGCCT
CTGGAGCGACAGCGATGACAGTAATAGTACCGGCGGGCACGACGACGACT
TTTTGCACACCAACTTCGACAGTTTTGACCATGATATCGACCAAACCCGG
AGCAGTCCTCCGCATGGTGTTGGCGACGGTAGTGACGTCCGTAGTATCGC
TGCCGGCGATGGACGTCTGCTGACTAAGCGTACGGCTGCCATGTCTCCGG
TAACGTGGCACGACCGAGGGGTGATGATCACAGACTGCGAGGATAATGGG
ACTAGTAGCTGTGACAGTGGATTCGGTCTCACAGCAGCAACCAATTCAGC
GAGGGCAGCGATCTTACAACAGAGCCCGGTGAGCACAGCACCGGTGACGA
AGACAACTTCGCCTCGATCTGCGGCGGGCAGTCCTAAACATGTTGCGGCG
GGCGACGAGAGTTCTGAGACCGCGACCTCTAGAGCCGAACTGTCGCGGTT
ACTGGGAGCACCAGCGCTTGCTCCTGTAGCGTGTGAGGCGGTAGTAGCAG
CGCCCGTAGCTACGGAGGCGGGGGGGGTTCCAACAAGCGCCGTCAATAGC
CTGGTGGGGAAATTCTCTTCTCTGGTGGATGAGGTGAACACCAAATCGAG
CGGGCGGATTGTGGTCAGTGGTGCGGATACCGCCACCACCACAGCCTCTT
CCTCCTCCTCTTCCTCCTTCTCCTCCACTTCAGCCTGTGCTTGTGCCTTT
GCTTCCTCTTCGTCACCATACTCTCATATTTCTGCGCAGGGGATTGGCAC
CGGTGCCGGCGCTGCTACTCCACGGCGATCTGCCCACCGCACGAGGCCTG
GCGGATCGCGGGTCAACAGTTTTGTACAGATTTTCAACACCGCCAGCGGC
GCCCACAGGGTCGACGTCGACGGTAGCAGTAGCAGTAGCAGCAGCAGCAA
CAAGAACGGGACCGGACGCTCCTCGTCTGGGTCGTACATGCGTCGCCGGC
CTCCTCTGGCGGCGGCCAAGGGGATGGCAGTGGCAAAGGCGAAAAATGTA
ACGCCGCCATCCGGCGATGTCGTTCACAAGGAGCAGGCCCGTGCGGCAGC
TGCAAGTTTCACGCGGCGCGTGGTGGGTGGCGACGGTCATCGAAACCTTT
TTTCTGCGATGGAGAGGAGCGGCGGGGGTCACCCGATAGTAGGCAGAGCA
GATGTGGGTACCGATGGAGGTGCTGACAATGGTAAATCCAATGTTTCTCC
CTCGGAGTCGCCCCCGCCCCTGTACAGGGAACCAAAACATTCGTGTATCT
TCCACTCGTGCCCTGGCCGTATGACTCAGGAGGACTGGACGGCATCTGCC
AACTCCGACGGACTGGGTGAGGACCTGCCTAGCGTCGGCTGTCCTCGCGC
TACTGAGGAGATCTGTCGACCTGTGAGAGGTCTGGCGGCAGATACAACAG
GGGTCGTTCAAAAAGGAGACTCGGGCCGTTGCTCTTTTGTAGACCAAGAA
TCAACCGTACAGACGAAGTTTGCGGTAGCTACTGCAGCGCAGGAGCAGAA
GCAGGATGAACATCCAGTAAATCTCGAGCGGCTAACGTCAACGTCGGCGG
CACCTGAGCAGCAGCAGCAAATACTGCCTCCGCACGCACAGCCCGGCCGC
TCCTCGCAACCGCCAAATTTCGAGAGGTCCGACAGCACGCCGATGGCTCT
ACCCCCGTCGGACGGCGAAGATGCGTGCCCTGAGCCTGACGTCGTGGACA
GCGGCGCCCCAGCGAAACATGACCCCGACCCCACGTACGATGACATATTC
GGCGCCGGCAACGGGCGCAGGCACAATGATGGGAGTGGCGATATATTTTC
CAGTGGCGGTGGGTTCAGGGGCAAGGAGAGGAGCAACACCGCCGATTTCA
CTGACACCGTAAGTTATGGTGGGCGGCGGCGGCGGCTGCCGCCTCATAGG
ACCAAGAGTCTGCATAGACAACGGAGCCTCTGGAGCGACAGCGATGACAG
TAATAGTACCGGCGGGCACGACGACGACTTTTTGCACACCAACTTCGACA
GTTTTGACCATGATATCGACCAAACCCGGAGCAGTCCTCCGCATGGTGTT
GGCGACGGTAGTGACGTCCGTAGTATCGCTGCCGGCGATGGACGTCTGCT
GACTAAGCGTACGGCTGCCATGTCTCCGGTAACGTGGCACGACCGAGGGG
TGATGATCACAGACTGCGAGGATAATGGGACTAGTAGCTGTGACAGTGGA
TTCGGTCTCACAGCAGCAACCAATTCAGCGAGGGCAGCGATCTTACAACA
GAGCCCGGTGAGCACAGCACCGGTGACGAAGACAACTTCGCCTCGATCTG
CGGCGGGCAGTCCTAAACATGTTGCGGCGGGCGACGAGAGTTCTGAGACC
GCGACCTCTAGAGCCGAACTGTCGCGGTTACTGGGAGCACCAGCGCTTGC
TCCTGTAGCGTGTGAGGCGGTAGTAGCAGCGCCCGTAGCTACGGAGGCGG
GGGGGGTTCCAACAAGCGCCGTCAATAGCCTGGTGGGGAAATTCTCTTCT
CTGGTGGATGAGGTGAACACCAAATCGAGCGGGCGGATTGTGGTCAGTGG
TGCGGATACCGCCACCACCACAGCCTCTTCCTCCTCCTCTTCCTCCTTCT
CCTCCACTTCAGCCTGTGCTTGTGCCTTTGCTTCCTCTTCGTCACCATAC
TCTCATATTTCTGCGCAGGGGATTGGCACCGGTGCCGGCGCTGCTACTCC
ACGGCGATCTGCCCACCGCACGAGGCCTGGCGGATCGCGGGTCAACAGTT
TTGTACAGATTTTCAACACCGCCAGCGGCGCCCACAGGGTCGACGTCGAC
GGTAGCAGTAGCAGTAGCAGCAGCAGCAACAAGAACGGGACCGGACGCTC
CTCGTCTGGGTCGTACATGCGTCGCCGGCCTCCTCTGGCGGCGGCCAAGG
GGATGGCAGTGGCAAAGGCGAAAAATGTAACGCCGCCATCCGGCGATGTC
GTTCACAAGGAGCAGGCCCGTGCGGCAGCTGCAAGTTTCACGCGGCGCGT
GGTGGGTGGCGACGGTCATCGAAACCTTTTTTCTGCGATGGAGAGGAGCG
GCGGGGGT
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