mRNA_H-paniculata_contig8376.16389.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8376.16389.1
Unique NamemRNA_H-paniculata_contig8376.16389.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8376.16389.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 1.300e-40
Identity = 80/122 (65.57%), Postives = 91/122 (74.59%), Query Frame = -3 
Query:    3 MSNRAIGGLRYRLGYRRRRGRIKVPALNAQRIARIRQFIVEYDRAVKLEVSETHVRVFMDESFCNQAHSSAYSYFGTDKDGVVQDGFGRTLGKGLCMIMVNAITRFGVLATTDSKGFCIKEG 368
            +SNRA+GGL YR+GYRRRRGRIK+P LN  R ARIR+F+VE   A+  E  E  V V+MDESFC+Q H SAYSYF TD DGVVQDG GRT GKGL MIMV+AIT+ G LA  D   F I EG
Sbjct:  211 LSNRAVGGLLYRIGYRRRRGRIKIPPLNDDRKARIRRFLVEMSAALTQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDDGVVQDGMGRTSGKGLRMIMVHAITKGGALAAVDENNFPIPEG 332
[Close]
BLAST of mRNA_H-paniculata_contig8376.16389.1 vs. uniprot
Match: A0A6H5KZM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM0_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.910e-40
Identity = 78/122 (63.93%), Postives = 90/122 (73.77%), Query Frame = -3 
Query:    3 MSNRAIGGLRYRLGYRRRRGRIKVPALNAQRIARIRQFIVEYDRAVKLEVSETHVRVFMDESFCNQAHSSAYSYFGTDKDGVVQDGFGRTLGKGLCMIMVNAITRFGVLATTDSKGFCIKEG 368
            +SNRA+GGL YR+GYRRR GRIK+P LN  R ARIR+F+VE   A+  E  E  V V+MDESFC+Q H SAYSYF TD +GVVQDG GRT GKGL MIMV+AIT+ G LA  D   F I EG
Sbjct:  211 LSNRAVGGLLYRIGYRRRGGRIKIPPLNDDRKARIRRFLVEMSAALTQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDNGVVQDGMGRTSGKGLRMIMVHAITKGGALAAVDENNFPIPEG 332
[Close]
BLAST of mRNA_H-paniculata_contig8376.16389.1 vs. uniprot
Match: A0A6H5JWX3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX3_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 7.470e-38
Identity = 76/124 (61.29%), Postives = 94/124 (75.81%), Query Frame = -3 
Query:    3 DRMSNRAIGGLRYRLGYRRRRGRIKVPALNAQRIARIRQFIVEYDRAVKLEVSETHVRVFMDESFCNQAHSSAYSYFGTDKDGVVQDGFGRTLGKGLCMIMVNAITRFGVLATTDSKGFCIKEG 374
            ++ SNR+ GGL  RLGY+RRRGRIK P LNA+R+ARIR+F+VE D A + E +   V V+MDESF +QAH S YSYF +D+DGVVQDG GRT GKGL MIMV+AIT++G LA     G  I+EG
Sbjct:   74 EQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKLCD-GLPIEEG 196
[Close]
BLAST of mRNA_H-paniculata_contig8376.16389.1 vs. uniprot
Match: A0A6H5KU97_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU97_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.920e-37
Identity = 71/112 (63.39%), Postives = 88/112 (78.57%), Query Frame = -3 
Query:   39 DRMSNRAIGGLRYRLGYRRRRGRIKVPALNAQRIARIRQFIVEYDRAVKLEVSETHVRVFMDESFCNQAHSSAYSYFGTDKDGVVQDGFGRTLGKGLCMIMVNAITRFGVLA 374
            ++ SNR+ GGL  RLGY+RRRGRIK P LNA+R+ARIR+F+VE D   + E +   V V+MDESF +QAH S YSYF +D+DGVVQDG GRT GKGL MIMV+AIT++G LA
Sbjct:   80 EQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMPKRAEDTGIAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLA 191
[Close]
BLAST of mRNA_H-paniculata_contig8376.16389.1 vs. uniprot
Match: A0A6H5JWS3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS3_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 4.250e-36
Identity = 75/124 (60.48%), Postives = 92/124 (74.19%), Query Frame = -3 
Query:    3 DRMSNRAIGGLRYRLGYRRRRGRIKVPALNAQRIARIRQFIVEYDRAVKLEVSETHVRVFMDESFCNQAHSSAYSYFGTDKDGVVQDGFGRTLGKGLCMIMVNAITRFGVLATTDSKGFCIKEG 374
            ++ SNR+ GGL  RLGY+RRRGRIK P LNA+R+ARIR+F+VE   A + E +   V V+MDESF +QAH S YSYF +D DGVVQDG GRT GKGL MIMV+AIT++G LA     G  I+EG
Sbjct:  116 EQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMVMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDDDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKLCD-GLPIEEG 238
[Close]
BLAST of mRNA_H-paniculata_contig8376.16389.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 4.300e-36
Identity = 76/124 (61.29%), Postives = 94/124 (75.81%), Query Frame = -3 
Query:    3 DRMSNRAIGGLRYRLGYRRRRGRIKVPALNAQRIARIRQFIVEYDRAVKLEVSETHVRVFMDESFCNQAHSSAYSYFGTDKDGVVQDGFGRTLGKGLCMIMVNAITRFGVLATTDSKGFCIKEG 374
            ++ SNR+ GGL  RLGY+RRRGRIK P LNA+R+ARIR+F+VE D A + E +   V V+MDESF +QAH S YSYF +D+DGVVQDG GRT GKGL MIMV+AIT++G LA     G  I+EG
Sbjct:   94 EQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKLCD-GLPIEEG 216
[Close]
BLAST of mRNA_H-paniculata_contig8376.16389.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 5.930e-36
Identity = 76/124 (61.29%), Postives = 96/124 (77.42%), Query Frame = -3 
Query:    3 DRMSNRAIGGLRYRLGYRRRRGRIKVPALNAQRIARIRQFIVEYDRAVKLEVSETHVRVFMDESFCNQAHSSAYSYFGTDKDGVVQDGFGRTLGKGLCMIMVNAITRFGVLATTDSKGFCIKEG 374
            ++ SNR++GGL  RLGY+RRRGRIK P LNA+R+ARIR+F+VE D A + E +   V V+MDESF +QAH S YSYF +D++GVVQDG GRT GKGL MIMV+AIT++G LA     GF I+EG
Sbjct:  245 EQPSNRSVGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDENGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKFCD-GFPIEEG 367
[Close]
BLAST of mRNA_H-paniculata_contig8376.16389.1 vs. uniprot
Match: A0A6H5KKV8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV8_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 6.190e-36
Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = -3 
Query:    3 MSNRAIGGLRYRLGYRRRRGRIKVPALNAQRIARIRQFIVEYDRAVKLEVSETHVRVFMDESFCNQAHSSAYSYFGTDKDGVVQDGFGRTLGKGLCMIMVNAITRFGVLATTDSKGFCIKEG 368
            MSNRA+GGL  RLG++RRRGRIK+P LN +R  RIR F+V+ D A + E +   V V+MDESF +QAH SAYSYF +D  GVVQDG GRT GKGL M+MV+AIT+ G LA    +GF I+EG
Sbjct:   91 MSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKRAEDAGVAVIVYMDESFVHQAHGSAYSYFPSDDKGVVQDGIGRTTGKGLRMMMVHAITKHGPLAELQ-EGFPIREG 211
[Close]
BLAST of mRNA_H-paniculata_contig8376.16389.1 vs. uniprot
Match: A0A6H5KF49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF49_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 7.800e-36
Identity = 76/124 (61.29%), Postives = 95/124 (76.61%), Query Frame = -3 
Query:    3 DRMSNRAIGGLRYRLGYRRRRGRIKVPALNAQRIARIRQFIVEYDRAVKLEVSETHVRVFMDESFCNQAHSSAYSYFGTDKDGVVQDGFGRTLGKGLCMIMVNAITRFGVLATTDSKGFCIKEG 374
            ++ SNR++GGL  RLGY+RRRGRIK P L+A R+ARIR+F+VE D A + E +   V V+MDESF +QAH S YSYF +D+DGVVQDG GRT GKGL MIMV+AIT++G LA     GF I+EG
Sbjct:  216 EQPSNRSVGGLLSRLGYKRRRGRIKTPRLDAARLARIRRFLVEMDIAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKLCD-GFPIEEG 338
[Close]
BLAST of mRNA_H-paniculata_contig8376.16389.1 vs. uniprot
Match: A0A6H5KAU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU4_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.260e-35
Identity = 76/124 (61.29%), Postives = 94/124 (75.81%), Query Frame = -3 
Query:    3 DRMSNRAIGGLRYRLGYRRRRGRIKVPALNAQRIARIRQFIVEYDRAVKLEVSETHVRVFMDESFCNQAHSSAYSYFGTDKDGVVQDGFGRTLGKGLCMIMVNAITRFGVLATTDSKGFCIKEG 374
            ++ SNR+ GGL  RLGY+RRRGRIK P LNA+R+ARIR+F+VE D A + E +   V V+MDESF +QAH S  SYF +D+DGVVQDG GRT GKGL MIMV+AIT++G LA     GF I+EG
Sbjct:  184 EQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPCSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKL-CYGFPIEEG 306
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8376.16389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ25_ECTSI1.300e-4065.57Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KZM0_9PHAE2.910e-4063.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWX3_9PHAE7.470e-3861.29Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KU97_9PHAE1.920e-3763.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JWS3_9PHAE4.250e-3660.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDX7_9PHAE4.300e-3661.29DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LNM6_ECTSI5.930e-3661.29DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KKV8_9PHAE6.190e-3660.66Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF49_9PHAE7.800e-3661.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAU4_9PHAE1.260e-3561.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8376contigH-paniculata_contig8376:9068..9443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size376
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8376.16389.1prot_H-paniculata_contig8376.16389.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8376 9080..9394 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931052.9906168-UTR-H-paniculata_contig8376:9067..90791622931052.9906168-UTR-H-paniculata_contig8376:9067..9079Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8376 9068..9079 +
1691481568.3154366-UTR-H-paniculata_contig8376:9067..90791691481568.3154366-UTR-H-paniculata_contig8376:9067..9079Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8376 9068..9079 +
1622931053.018918-UTR-H-paniculata_contig8376:9394..94431622931053.018918-UTR-H-paniculata_contig8376:9394..9443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8376 9395..9443 +
1691481568.3421123-UTR-H-paniculata_contig8376:9394..94431691481568.3421123-UTR-H-paniculata_contig8376:9394..9443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8376 9395..9443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931053.0042872-CDS-H-paniculata_contig8376:9079..93941622931053.0042872-CDS-H-paniculata_contig8376:9079..9394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8376 9080..9394 +
1691481568.3265142-CDS-H-paniculata_contig8376:9079..93941691481568.3265142-CDS-H-paniculata_contig8376:9079..9394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8376 9080..9394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8376.16389.1

>prot_H-paniculata_contig8376.16389.1 ID=prot_H-paniculata_contig8376.16389.1|Name=mRNA_H-paniculata_contig8376.16389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MQKPLLSVVAKTPNRVIAFTMIMHKPFPNVLPKPSCTTPSLSVPKYEYAE
LWAWLQNDSSMNTRTWVSLTSSLTARSYSTINWRIRAILWAFKAGTFILP
LRRL*
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mRNA from alignment at H-paniculata_contig8376:9068..9443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8376.16389.1 ID=mRNA_H-paniculata_contig8376.16389.1|Name=mRNA_H-paniculata_contig8376.16389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=376bp|location=Sequence derived from alignment at H-paniculata_contig8376:9068..9443+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACCCTCCTTGATGCAAAAACCCTTACTGTCTGTGGTTGCCAAAACCCC
AAATCGTGTGATCGCATTCACCATGATCATGCACAAGCCCTTTCCTAACG
TTCTACCAAAGCCGTCCTGCACTACCCCATCCTTGTCCGTACCAAAGTAC
GAATACGCTGAGCTATGGGCCTGGTTGCAAAATGATTCATCCATGAACAC
TCGGACATGGGTTTCGCTAACCTCAAGTTTGACTGCGCGATCGTACTCGA
CAATAAACTGGCGAATACGTGCTATCCTCTGGGCATTTAAAGCTGGTACT
TTTATCCTACCCCTACGACGCCTGTAACCGAGCCTATACCGTAACCCTCC
TATCGCGCGGTTTGACATTCTGTCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8376:9068..9443+

>mRNA_H-paniculata_contig8376.16389.1 ID=mRNA_H-paniculata_contig8376.16389.1|Name=mRNA_H-paniculata_contig8376.16389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig8376:9068..9443+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAAAACCCTTACTGTCTGTGGTTGCCAAAACCCCAAATCGTGTGAT
CGCATTCACCATGATCATGCACAAGCCCTTTCCTAACGTTCTACCAAAGC
CGTCCTGCACTACCCCATCCTTGTCCGTACCAAAGTACGAATACGCTGAG
CTATGGGCCTGGTTGCAAAATGATTCATCCATGAACACTCGGACATGGGT
TTCGCTAACCTCAAGTTTGACTGCGCGATCGTACTCGACAATAAACTGGC
GAATACGTGCTATCCTCTGGGCATTTAAAGCTGGTACTTTTATCCTACCC
CTACGACGCCTGTAAATGCAAAAACCCTTACTGTCTGTGGTTGCCAAAAC
CCCAAATCGTGTGATCGCATTCACCATGATCATGCACAAGCCCTTTCCTA
ACGTTCTACCAAAGCCGTCCTGCACTACCCCATCCTTGTCCGTACCAAAG
TACGAATACGCTGAGCTATGGGCCTGGTTGCAAAATGATTCATCCATGAA
CACTCGGACATGGGTTTCGCTAACCTCAAGTTTGACTGCGCGATCGTACT
CGACAATAAACTGGCGAATACGTGCTATCCTCTGGGCATTTAAAGCTGGT
ACTTTTATCCTACCCCTACGACGCCTGTAA
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