mRNA_H-paniculata_contig8371.16385.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8371.16385.1
Unique NamemRNA_H-paniculata_contig8371.16385.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8371.16385.1 vs. uniprot
Match: A0A6H5KCT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.990e-10
Identity = 35/73 (47.95%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:    4 GGEWVLPRAGPVQDWAAAVAFGSWEEARRLLTPNEGDLRTLTGDA--LTAAVAELDSLARRARQVERILQGSV 216
            GGEW+LPRA PVQ+WAAAVA  +W+EA  L              A  L      L++LARR+RQ ERIL+ S+
Sbjct:  856 GGEWMLPRARPVQEWAAAVALEAWDEASSLTAALHAPPGASWPSAPWLDDVAVTLEALARRSRQAERILEASI 928
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BLAST of mRNA_H-paniculata_contig8371.16385.1 vs. uniprot
Match: D7FN13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN13_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 5.050e-10
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:    4 GGEWVLPRAGPVQDWAAAVAFGSWEEARRL----LTPNEGDLRTLTGDALTAAVAELDSLARRARQVERILQGS 213
            GGEW+LPRA PVQ+WAAAVA  +W+EA  L    L P      ++    L      L++LARR+RQ ERIL+ S
Sbjct:  711 GGEWMLPRARPVQEWAAAVALEAWDEASSLAAALLAPPGASWPSVPW--LDDVAVTLEALARRSRQAERILEAS 782
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8371.16385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCT0_9PHAE1.990e-1047.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN13_ECTSI5.050e-1048.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8371contigH-paniculata_contig8371:5965..7004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931052.6779773-CDS-H-paniculata_contig8371:5964..60061622931052.6779773-CDS-H-paniculata_contig8371:5964..6006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8371 5965..6006 +
1691481568.189195-CDS-H-paniculata_contig8371:5964..60061691481568.189195-CDS-H-paniculata_contig8371:5964..6006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8371 5965..6006 +
1622931052.6967063-CDS-H-paniculata_contig8371:6800..70041622931052.6967063-CDS-H-paniculata_contig8371:6800..7004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8371 6801..7004 +
1691481568.200259-CDS-H-paniculata_contig8371:6800..70041691481568.200259-CDS-H-paniculata_contig8371:6800..7004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8371 6801..7004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8371.16385.1prot_H-paniculata_contig8371.16385.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8371 5965..7004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8371.16385.1

>prot_H-paniculata_contig8371.16385.1 ID=prot_H-paniculata_contig8371.16385.1|Name=mRNA_H-paniculata_contig8371.16385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
GGGEWVLPRAGPVQDWAAAVAFGSWEEARRLLTPNEGDLRTLTGDALTAA
VAELDSLARRARQVERILQGSVVSQPPPPPY*
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mRNA from alignment at H-paniculata_contig8371:5965..7004+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8371.16385.1 ID=mRNA_H-paniculata_contig8371.16385.1|Name=mRNA_H-paniculata_contig8371.16385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1040bp|location=Sequence derived from alignment at H-paniculata_contig8371:5965..7004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGTGGGGAGTGGGTTCTCCCTCGGGCCGGACCTGTGCAGGTTTTGAG
TAGGGGACAGGACGGGGGGGGGGGCGGGTACTCGAGAAGATGGAGCTTTG
TTTATATCAGAGCGAGTCCCGATAGCCAATCTCTGTTCTCTACGTTGCTA
GATGTGTCTCAAAAATGTTTCACCTCAAACGTGTCCTGTCTACCTCAAAT
CTCGCGTGTTGAGGCCAATGTCTATGTCCATGTCCTAGAACCAACCGCTT
TCTTTTTCGCAATCCCAGGACTTCAAGTGCCTCTCTATAGCATCCTTCGG
TCTTCCCCTACTTGACTCAAATAGATTTTGCTCCATTTTTTTCCACAGGG
TTCATTTCTCACCATGTAAAGTCGGTCCTCGCAAGCACTACCGTAGTCAG
TCACACTTGATCATATAGTCGTCGTCTTTTTGTGTACTTCCCTGAATCGC
TTGTTATACGTACTCCACGAGGTCAAAAGCCCCCATCATACCCTCTTGAG
TTTTGGGGGGGGGGTCGTGTTCATGTCTTGCATGTCGTCGTGTTTAGGCC
GTTGACGACGCGACCTCGGGAGGAAGTGGCGTGGCGTGGGGTGGGGGCAT
GCATGGACATGTACTCTTTCGGTGCATTCAATGATAAACAACCCAACGCA
GGAAAGGGCAGCTGCCGCCGTGGTTTTTAGGGCTTTATGAGGAGAAAAGC
CTATGTCGAACAAAATTGGTATTTTTGTATTATGTTCGTCAACTGCTGAA
CACCGGTGTTAATACTGTAGGCGGGTTCATTTATCCATGGGAGCGTGCAA
GTGATTAACCCTTGAGCCTTATTGAACCCAACGTAGGACTGGGCGGCTGC
TGTGGCGTTCGGATCGTGGGAAGAAGCTCGTCGACTACTTACCCCGAATG
AAGGAGACCTACGCACGCTAACCGGCGATGCCCTTACGGCCGCCGTGGCG
GAGTTGGATTCATTGGCGAGGCGGGCGAGGCAGGTGGAACGGATTCTACA
GGGGTCGGTGGTGAGTCAGCCCCCCCCCCCTCCGTATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig8371:5965..7004+

>mRNA_H-paniculata_contig8371.16385.1 ID=mRNA_H-paniculata_contig8371.16385.1|Name=mRNA_H-paniculata_contig8371.16385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig8371:5965..7004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGTGGGGAGTGGGTTCTCCCTCGGGCCGGACCTGTGCAGGGGGGTGG
GGAGTGGGTTCTCCCTCGGGCCGGACCTGTGCAGGACTGGGCGGCTGCTG
TGGCGTTCGGATCGTGGGAAGAAGCTCGTCGACTACTTACCCCGAATGAA
GGAGACCTACGCACGCTAACCGGCGATGCCCTTACGGCCGCCGTGGCGGA
GTTGGATTCATTGGCGAGGCGGGCGAGGCAGGTGGAACGGATTCTACAGG
GGTCGGTGGTGAGTCAGCCCCCCCCCCCTCCGTATTAAGACTGGGCGGCT
GCTGTGGCGTTCGGATCGTGGGAAGAAGCTCGTCGACTACTTACCCCGAA
TGAAGGAGACCTACGCACGCTAACCGGCGATGCCCTTACGGCCGCCGTGG
CGGAGTTGGATTCATTGGCGAGGCGGGCGAGGCAGGTGGAACGGATTCTA
CAGGGGTCGGTGGTGAGTCAGCCCCCCCCCCCTCCGTATTAA
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