mRNA_H-paniculata_contig8348.16364.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8348.16364.1
Unique NamemRNA_H-paniculata_contig8348.16364.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8348.16364.1 vs. uniprot
Match: A0A6H5KE38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE38_9PHAE)

HSP 1 Score: 336 bits (861), Expect = 1.440e-104
Identity = 177/253 (69.96%), Postives = 204/253 (80.63%), Query Frame = 1
Query:    1 VTYLTAAANELTGEGLDGVRPLRDLTVFNASGNRLKRVPAAVFAQFRALQALVLNNNEIAEVPPTWLKKGLFNLNTLVLSHNKVKSLKDTGLGRLTALTKLSISHNLLHELPDLSACRALEELRASHNQISEVPASLAANIALRTLDLGHNEIGEWRGLEKLGKSLTSLVQLSLSGNPLCASATGVSVEDDGGDD--ETYVTKVMSMFPALKVRDAKRVLKKKSHTYYEQRAMMELDGAEKG--GARVDNAKR 747
            VTYLTAA NELTG+GLDGVRPL+DL VFNASGNR++R+P AVFAQFR LQALVL++NEI+EVPPTWLKKGL +LNTLVLSHNK+KSL  TGLGRLTALTKLSIS+N L ELPDLSAC  LEELRA+HN +++VPASL+ N ALRTLDLGHN I +W GLE+LG+SL SL+QLSLSGNP+C +A        G +D  E YV KV S+FP LKVRD KR+L KKSHTYYEQR   +  GA     G R D+A R
Sbjct:   91 VTYLTAAGNELTGDGLDGVRPLKDLKVFNASGNRVRRIPPAVFAQFRQLQALVLSDNEISEVPPTWLKKGLLSLNTLVLSHNKLKSLSGTGLGRLTALTKLSISYNTLVELPDLSACSGLEELRAAHNIVTQVPASLSKNAALRTLDLGHNNIDDWVGLERLGESLKSLMQLSLSGNPICGAAAAAEKRGTGEEDGEEDYVAKVRSLFPGLKVRDGKRILMKKSHTYYEQRGGEQGTGAXXXXXGGRKDSAMR 343          
BLAST of mRNA_H-paniculata_contig8348.16364.1 vs. uniprot
Match: D7FIN7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN7_ECTSI)

HSP 1 Score: 306 bits (784), Expect = 3.180e-93
Identity = 168/260 (64.62%), Postives = 196/260 (75.38%), Query Frame = 1
Query:    1 VTYLTAAANELTGEGLDGVRPLRDLTVFNASGNRLKRVPAAVFAQFRALQALVLNNNEIAEVPPTWLKKGLFNLNTLVLSHNKVKSLKDTGLGRLTALTKLSISHNLLHELPDLSACRALEELRASHNQISEVPASLAANIALRTLDLGHNEIGEWRGLEKLGKSLTSLVQLSLSGNPLCASATGVSVEDDGGDD--ETYVTKVMSMFPALKVRDAKRVLKKKSHTYYEQRAMMELDGAEKGGARVDNAKR-ETPGDGGR 771
            VTYLTAA+NELTG+GLDGVRPL+DL VFNASGNR++R+P AVFAQFR LQALVL++NEI+EVPPTWLK+GL +LNTLVLSHNK+KSL  TGLGRLTALTKLSIS+N L ELPDLSAC  LEELRA+HN +++VPASL+ N ALRTLDLGHN I +W GLE+LGKSL SL+QLSLSGNP+C +A        G +D  E YV KV S+FP LK                  R   +  GA  GG R D+A R  TPG GG+
Sbjct:   93 VTYLTAASNELTGDGLDGVRPLKDLKVFNASGNRVRRIPPAVFAQFRQLQALVLSDNEISEVPPTWLKQGLLSLNTLVLSHNKLKSLSGTGLGRLTALTKLSISYNTLVELPDLSACSGLEELRAAHNIVTQVPASLSKNAALRTLDLGHNRIDDWVGLERLGKSLKSLMQLSLSGNPICGAAAAAEKSGTGEEDGEEGYVAKVRSLFPGLK------------------RGGEQGAGAGAGGGRKDSALRGTTPGTGGK 334          
BLAST of mRNA_H-paniculata_contig8348.16364.1 vs. uniprot
Match: A0A835Z8M8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8M8_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.050e-42
Identity = 117/283 (41.34%), Postives = 142/283 (50.18%), Query Frame = 1
Query:    1 VTYLTAAANELTGEGLDGVRPLRDLTVFNASGNRLKRVPAAVFAQFRALQALVLNNNEIAEVPPTWLKKGLFN-LNTLVLSHNKVKSLKDTGLGRLTALTK-------------------------------------------LSISHNLLHELPDLSACRALEELRASHNQISEVPASLAANIALRTLDLGHNEIGEWRGLEKLGKSLTSLVQLSLSGNPLCA----------------SATGVSVEDDGGDDETYVTKVMSMFPALKVRDAKRVLKKKSH 669
            VTYL    NELTGEGLDGVR L DL V NA+ N++K VPAAVF  FR LQ LVLN+N IA VP TW KKG+   LNTLVLSHN + SL D+GL +L  LTK                                           LS SHN L E+PDLSAC                P  L+   ALR LDLGHN + EW  ++KL  +  +LVQL+L G P+                  +A   +VE+D      Y +K+  +FP LK +D +R L K SH
Sbjct:   69 VTYLKVDNNELTGEGLDGVRCLPDLNVLNAAHNQIKTVPAAVFGAFRGLQVLVLNDNAIAAVPRTWWKKGVAAALNTLVLSHNAIASLSDSGLDKLAMLTKRDAAAARRGAAMPSAAAAIITERSERCFYERCCGLDKFAMLTELSASHNQLSEMPDLSACAXXXXXXXXXXXXXXXPVWLSELAALRLLDLGHNAVSEWSEVKKL-TTAPALVQLTLRGCPISGVTSVPGEQQQHAAGDGAAPAAAVEEDAERVAEYESKMKKLFPKLKTQDGQRTLPKISH 350          
BLAST of mRNA_H-paniculata_contig8348.16364.1 vs. uniprot
Match: A0A7S1XKR6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKR6_9STRA)

HSP 1 Score: 145 bits (366), Expect = 7.280e-36
Identity = 102/268 (38.06%), Postives = 144/268 (53.73%), Query Frame = 1
Query:    1 VTYLTAAANELTGEGLDGVRPLRDLTVFNASGNRLKRVPAAVFAQFRALQALVLNNNEIAEVPPTWLKKGLFNLNTLVLSHNKV-KSLKDTGLGRLTALTKLSISHNLLHELPDLSAC-RALEELRASHNQISEVPASLAANIALRTLDLGHNEIGEWRGLEKLGKSLTSLVQLSLSGNPLCA------SATGVSVEDDGGDDE-----------------TYVTKVMSMFPALKVRDAKRVLKKKSHTYYEQRAMMELDGAEKGGAR 729
            +++L AA NELTGEGL G+  L  L   NA  N++K +P   F + ++L+ALVLN+NEI+     +LKK L  L  LVLS N++   L       L +L K++++ N + ELPDLS C   L ELRA++N +  VP +L     L+ ++LG N I  WR L  L  SL  +  LSL GNP+C        A   + ED  G++                   YV KV  +FP L V D +RV+ K++H + +     E  GAE GG+R
Sbjct:   10 LSWLQAAENELTGEGLAGLHGLEALVTLNAGRNKIKAIPPGTFTRCKSLKALVLNDNEISATD--FLKK-LKGLTVLVLSRNQLGPQLNPRHFAGLRSLMKINLAGNAIEELPDLSPCAETLVELRAANNALRGVPQTLRRCKKLKVVELGSNRISSWRALAPL-TSLERITHLSLKGNPICTWAAEAPEAPAAAPEDGSGEEPDTEEEESEDDKANKPATNYVDKVRELFPKLVVMDGQRVMLKRTHGFKKPEG--ENAGAEDGGSR 271          
BLAST of mRNA_H-paniculata_contig8348.16364.1 vs. uniprot
Match: A0A2D4BR18_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BR18_PYTIN)

HSP 1 Score: 148 bits (374), Expect = 4.780e-35
Identity = 95/249 (38.15%), Postives = 134/249 (53.82%), Query Frame = 1
Query:    1 VTYLTAAANELTGEGLDGVRPLRDLTVFNASGNRLKRVPAAVFAQFRALQALVLNNNEIAEVPPTWLKKGLFN---LNTLVLSHNKVKSLKDTGLGRLTALTKLSISHNLLHELPDLSACRALEELRASHNQISEVPASLAANIALRTLDLGHNEIGEWRGLEKLGKSLTSLVQLSLSGNPL------CASATGVSVEDDGGDDET---------------YVTKVMSMFPALKVRDAKRVLKKKSHTY 675
            +T L    N+L GEGL  +R L+ L   N + N + R+P  V      L+ALVLNNN I  +   W+ K       LN+L++SHN++  L    + RL  LTK+S++HNLL ELPDLS+ +       S N++  VP SLA    L+ L+LGHNEI +W G+E L K L SL Q+SL+GNP+       +  T   +++D   ++                Y  K+  +FP L +RD  RVL KK H Y
Sbjct:   81 LTMLKLMENKLNGEGLAELRHLKKLVTLNIADNVVLRIPTDVLRHMSQLKALVLNNNSITTLE--WIPKLSVRGNQLNSLIVSHNRIPELAPRIVDRLPNLTKISMTHNLLEELPDLSSLKNXXXXXFSXNKLKTVPKSLAQLPKLKILELGHNEIDDWEGIEALSK-LDSLKQISLTGNPIYGVPLDASKTTETELKEDASAEDKAKMKEXXRLEAKHKQYNFKMKRLFPNLVIRDGHRVLNKKVHGY 326          
BLAST of mRNA_H-paniculata_contig8348.16364.1 vs. uniprot
Match: A0A396ZVE2_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZVE2_9STRA)

HSP 1 Score: 121 bits (304), Expect = 7.320e-27
Identity = 86/268 (32.09%), Postives = 131/268 (48.88%), Query Frame = 1
Query:    1 VTYLTAAANELTGEGLDGVRPLRDLTVFNASGNRLKRVPAAVFAQFRALQALVLNNNEIAEVPPTWLKKGLFNLNTLVLSHNKVKSLKDTGLGRLTALTKLSI----------------------SHNLLHELPDLSACRALEELRASHNQISEVPASLAANIALRTLDLGHNEIGEWRGLEKLGKSLTSLVQLSLSGNPLCASATGVSVE--DDGGDDETYVT---------------------KVMSMFPALKVRDAKRVLKKKSH 669
            +T L   +N L   G+  +   + L   + S N+L R+P A       L+ALVL  N +  +   W+   L  L +L++SHN++  +    +G+L  LTKL +                      SHN L ELPDLSA   L ELRAS+NQ++ +PAS+  N+ L+ +D+ HN I  + GL++   SL  L QL+L GNP+C   + + +E  D   + E   T                     K+  +FPAL VRD +R+  K++H
Sbjct:   83 LTQLKITSNVLVDAGIVDLSFCKQLVTLDLSDNKLARLPGASLRHCTGLRALVLTKNAMTSLE--WVP-SLPGLTSLIVSHNRITEISAKSIGKLKGLTKLQLYCTPPSILSMSLNQYGHYNYRSSHNKLTELPDLSALEQLTELRASNNQLTALPASINHNVNLKIVDVCHNHIDTFDGLDQW-TSLAQLKQLNLRGNPICGQNSTIPMELVDSAKEKEEDATVSQVDLAERKALDKKNKLYNFKMKRLFPALIVRDGQRIQDKRTH 346          
BLAST of mRNA_H-paniculata_contig8348.16364.1 vs. uniprot
Match: A0A662XYI4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYI4_9STRA)

HSP 1 Score: 103 bits (258), Expect = 7.780e-20
Identity = 90/295 (30.51%), Postives = 125/295 (42.37%), Query Frame = 1
Query:    1 VTYLTAAANELTGEGLDGVRPLRDLTVFNASGNRLKRVPAAVFAQFRALQALVLNNNEIAE--------VPPTWLKKG------------------------LFNLNTLVLSHNKVKSLKDTGLGRLTALTKLSISHNLLHELPDLSACRALEELRASHNQISEVPASLAANIALRTLDLGHNEIGEWRGLEKLGKSLTSLVQLSLSGNPLCASATGVSVEDDGGDD--------------------------------------ETYVTKVMSMFPALKVRDAKRVLKKKSHTY 675
            VT L    N+L GEGL  ++ L+ L + NA+ N++ R+P  V    R+L+ALVLNNN I          V  +WLK                          +  LN+L++SHN++  +    L  L  LTK+SI+H           C  L  L A  N              L+ L+L HN+I +W GLE L  SL +L QL+++GNPL      V V+  G DD                                      + Y  K+  +FP L VRDA+RVL K+ H Y
Sbjct:   82 VTMLKLTDNKLNGEGLAEIQHLKKLVILNAAENQVTRIPYEVMRNMRSLKALVLNNNSITTLDWMPKLPVCSSWLKNARNGSRSLCCRSKCVVNSFVCVPCNVQELNSLIVSHNRIAQIPQRILDWLPNLTKISIAH----------LCVLLSILAAVEN--------------LKVLELSHNQIDDWAGLEALS-SLENLRQLNMTGNPLVGQKLEV-VKKSGDDDXXXXXXXXXXXDGESTKIELSAEEKQKLKESKRLDAKHKQYNFKMKRLFPNLVVRDAQRVLDKRVHGY 350          
BLAST of mRNA_H-paniculata_contig8348.16364.1 vs. uniprot
Match: M4BDR9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BDR9_HYAAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.670e-18
Identity = 71/195 (36.41%), Postives = 94/195 (48.21%), Query Frame = 1
Query:    1 VTYLTAAANELTGEGLDGVRPLRDLTVFNASGNRLKRVPAAVFAQFRALQALVLNNNEIAEVPPTWLKKGLFNLNTLVLSHNKVKSLKDTGLGRLTALTKLSISHNLLHELPDLSACRALEELRASHNQISEVPASLAANIALRTLDLGHNEIGEWRGLEKLGKSLTSLVQLSLSGNPLCAS---ATGVSVEDDG 576
            VT L    N+LTG+GL  ++ L+ L + NA+ N + R+P  V    R L+ALVLNNN I+ +   W+ K                 +    LG L  L K+SISHNLL E+PDLS    + ELR SHN+I  VPA LA ++                       SL +L QL+L GNP+       T   VE  G
Sbjct:   77 VTMLKLTDNKLTGDGLAEIQHLKKLVILNAAENSVTRIPFEVLRNVRTLKALVLNNNSISTLD--WIPK---------------LPIPQRVLGGLPNLKKISISHNLLEEIPDLSQLSEITELRLSHNRIKTVPAHLA-HLKXXXXXXXXXXXXXXXXXXXXXXSLHNLRQLNLIGNPIVGKKLPTTAGDVEKSG 253          
BLAST of mRNA_H-paniculata_contig8348.16364.1 vs. uniprot
Match: W4G4F9_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G4F9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.970e-15
Identity = 67/249 (26.91%), Postives = 111/249 (44.58%), Query Frame = 1
Query:    1 VTYLTAAANELTGEGLDGVRPLRDLTVFNASGNRLKRVPAAVFAQFRALQALVLNNNEIAEVPPTWLKKGLFNLNTLVLSHNKVKSLKDTGLGRLTALTKLSISHNLLHELPDLSACRALEELRASHNQISEVPASLAANIALRTLDLGHNEIGEWRGLEKLGKSLTSLVQLSLSGNPLCASATGVSVE--------DDGG----------------DDETYVTKVMSMFPALKVRDAKRVLKKKSHTY 675
            +T L   +N L   G+  +   + L   + S N+L R+P A       L+ALVL  N +  +   W+   L  L +L++SHN++  +    +G+                LPDL+A                 PAS+  N+ L+ +D+ HN I  + GL++   SL  L QL+L GNP+C  ++ + +E        +D                   ++ Y  K+  +FPAL VRD +R+  K++H Y
Sbjct:   90 LTQLKITSNVLVDAGIVDLSFCKQLVTLDLSDNKLARLPGASLRHCTGLRALVLTKNAMTSLE--WVP-SLPGLTSLIVSHNRITEISAKSIGKXXXXXXXXXXXXXXXXLPDLTALEQXXXXXXXXXXXXXXPASINHNVNLKIVDVCHNHIDTFDGLDQW-TSLAQLKQLNLRGNPICGQSSTLPMELVESAKEKEDASATVSQVDLAERKALDKKNKLYNFKMKRLFPALIVRDGQRIQDKRTHGY 334          
BLAST of mRNA_H-paniculata_contig8348.16364.1 vs. uniprot
Match: A0A8K1CHT4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHT4_PYTOL)

HSP 1 Score: 87.4 bits (215), Expect = 1.310e-14
Identity = 73/261 (27.97%), Postives = 106/261 (40.61%), Query Frame = 1
Query:    1 VTYLTAAANELTGEGLDGVRPLRDLTVFNASGNRLKRVPAAVFAQFRALQALVLNNNEIAEVPPTWLKKGLFNLNTLVLSHNKVKSLKDTGLGRLTALTKLSISHNLLHELPDLSACRALEELRASHNQISEVPASLAANIALRTLDLGHNEIGEWRGLEKLGKSLTSLVQLSLSGNPLCASATGVSVEDDGGDD------------------------------------ETYVTKVMSMFPALKVRDAKRVLKKKSHTY 675
            +T L    N+L G+GL  ++ L+                             VLNNN I  +   W+      LN+L++SHN++  L    + RL  LTK+S++HNLL ELPDLS+ + + ELR SHN+I  +PASLA                           L +L QLSL+GNP+       + +                                          + Y  K+  +FP+L +RD  RVL KK+H Y
Sbjct:   75 LTMLKLTDNKLNGDGLAELQHLKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLNNNAITTLE--WIP-AFPELNSLIVSHNRIPQLLPRTIDRLPNLTKISMTHNLLEELPDLSSLKNITELRFSHNKIKTIPASLAXXXXXXXXXXXXXXXXXXXXXXXXXX-LENLKQLSLTGNPIYGVPLDATKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHKHYNFKMKRLFPSLVIRDGHRVLNKKTHGY 331          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8348.16364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KE38_9PHAE1.440e-10469.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIN7_ECTSI3.180e-9364.62Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835Z8M8_9STRA1.050e-4241.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XKR6_9STRA7.280e-3638.06Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A2D4BR18_PYTIN4.780e-3538.15Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A396ZVE2_9STRA7.320e-2732.09Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A662XYI4_9STRA7.780e-2030.51Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
M4BDR9_HYAAE3.670e-1836.41Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
W4G4F9_9STRA1.970e-1526.91Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]
A0A8K1CHT4_PYTOL1.310e-1427.97Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8348contigH-paniculata_contig8348:7287..10016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score308.9
Seed ortholog evalue4.5e-81
Seed eggNOG ortholog2880.D7FIN7
KEGG koko:K17579
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-27_000450.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04812
Exons5
Model size1598
Cds size1596
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8348.16364.1prot_H-paniculata_contig8348.16364.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8348 7287..10016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931049.232434-CDS-H-paniculata_contig8348:7286..74021622931049.232434-CDS-H-paniculata_contig8348:7286..7402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8348 7287..7402 -
1691481566.5087147-CDS-H-paniculata_contig8348:7286..74021691481566.5087147-CDS-H-paniculata_contig8348:7286..7402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8348 7287..7402 -
1622931049.2459342-CDS-H-paniculata_contig8348:7480..77931622931049.2459342-CDS-H-paniculata_contig8348:7480..7793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8348 7481..7793 -
1691481566.5196803-CDS-H-paniculata_contig8348:7480..77931691481566.5196803-CDS-H-paniculata_contig8348:7480..7793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8348 7481..7793 -
1622931049.2603493-CDS-H-paniculata_contig8348:7856..86701622931049.2603493-CDS-H-paniculata_contig8348:7856..8670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8348 7857..8670 -
1691481566.529972-CDS-H-paniculata_contig8348:7856..86701691481566.529972-CDS-H-paniculata_contig8348:7856..8670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8348 7857..8670 -
1622931049.2753024-CDS-H-paniculata_contig8348:9063..91671622931049.2753024-CDS-H-paniculata_contig8348:9063..9167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8348 9064..9167 -
1691481566.5388682-CDS-H-paniculata_contig8348:9063..91671691481566.5388682-CDS-H-paniculata_contig8348:9063..9167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8348 9064..9167 -
1622931049.2879386-CDS-H-paniculata_contig8348:9767..100161622931049.2879386-CDS-H-paniculata_contig8348:9767..10016Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8348 9768..10016 -
1691481566.548474-CDS-H-paniculata_contig8348:9767..100161691481566.548474-CDS-H-paniculata_contig8348:9767..10016Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8348 9768..10016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8348.16364.1

>prot_H-paniculata_contig8348.16364.1 ID=prot_H-paniculata_contig8348.16364.1|Name=mRNA_H-paniculata_contig8348.16364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=532bp
VTYLTAAANELTGEGLDGVRPLRDLTVFNASGNRLKRVPAAVFAQFRALQ
ALVLNNNEIAEVPPTWLKKGLFNLNTLVLSHNKVKSLKDTGLGRLTALTK
LSISHNLLHELPDLSACRALEELRASHNQISEVPASLAANIALRTLDLGH
NEIGEWRGLEKLGKSLTSLVQLSLSGNPLCASATGVSVEDDGGDDETYVT
KVMSMFPALKVRDAKRVLKKKSHTYYEQRAMMELDGAEKGGARVDNAKRE
TPGDGGRGREVEMEQDGPKSKSVKKKSKKITTREEQGSTKTGGVSKSSQG
GVAEMGIEREEEAVVTGRKASAVKNDHERHAKRKRKSDGGGVSLGKESVT
PHNEESTEPRSSKSVKKKKIRAGDEGAGSGVMANGNQTAHSGSEEQRRKK
NVREKNAKKRTSSTGLPSSSSKDDAETITGSIVDKDPYSSSEELPIPGAQ
RQRAQHQGGNHPGNTVAGVQSESGVVAVVVNHKSSKKKKNKRSRGSDVGE
EEGGGFSMESMLMARESCMGPGVGGGVSAWD*
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mRNA from alignment at H-paniculata_contig8348:7287..10016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8348.16364.1 ID=mRNA_H-paniculata_contig8348.16364.1|Name=mRNA_H-paniculata_contig8348.16364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2730bp|location=Sequence derived from alignment at H-paniculata_contig8348:7287..10016- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCACCTATCTCACCGCGGCCGCGAACGAGCTGACGGGTGAGGGTCTGGA TGGGGTCCGCCCATTGCGTGATCTCACCGTTTTCAACGCCTCCGGCAATC GGCTGAAGCGGGTGCCGGCGGCGGTGTTTGCGCAATTCCGAGCGTTGCAG GCTTTGGTGTTGAATAACAACGAGATCGCAGAGGTTCCGCCGACATGGCT CAAGAAGGGCTTGTTCAACCTGAACACTCTGGTGCTGAGCCATAACAAGG TGAGAGGAATTGAGATGTGAAGAACCTGCGTCCACATGGTACTCGATAGG CTTTACCGCACGGGCCCTCTCATCAAACACATGATTATAAAAGGGACAAG CCGGAGGTTGTTGAAAAAGGAGGAAACAGCTAAACTCCGGCCACAAGCCA TAACTTTAACGAGAGTGATGAAGATTCTTCTCTGCTTCGCCAGAACAAGA ACAGCCTTGCCTTAGTTTCGATTTTTTTATGAGCACGTCAACGCGCGTCC ATCACTGGTATACACCCTGGAGCGTGTAGTTGTATGTTGATCGGTACGCA ACATCGAGTATTCGCCATGATATTTTTTTGTTTCGGTGGGTGGTGAATAT GTGACGATGTCAAGAAATCGTGATATGCTGCCCGCTGACAGGACGGCGGA GAGTATGATCACATTACTCCACAGTTATTTTATCAATCGTCGACCAAATT CCGCATCTTTGTAGCCGTACCACTCTATTTCCTCTCGTTTCTTGGTACGA TTCTAAGTGCCCAAGGTTAACTTCAGGCATTCCTGCGCTGTTTATTTGCG CATGGTGACTTGTTTTGCATTAATTTGTCCTGATATTGTCAACTGCAAGG TGAAATCTTTGAAGGACACGGGTCTCGGACGTCTGACGGCGCTCACCAAG CTCTCCATATCACACAACCTTCTGCATGAGCTTCCTGACCTGTCCGCGTG CAGGTAAGAGGCTTGCAACACAATGCCCTGCCAGCTGCTAGACGTATGAA GTCGAGATGACCTTGCAAACAGAGGGGGATTGGCCGGTAAAGGCTCAGGA ATGGACGTGGGGAAGGGGGTTAGCCATGGTGTGGGACAGCCCCATGCTGG GTGTTGCCAACGGGGAATTTTATCCGGTTGCGTGGCCACATTCTATTGTG TGGGAGCTGTAATAAACACCATGCCGCAAATGTCTACCTGTTTCTGTGTC CCTTCTGTGCACAGTGCATACAAGAATGTCATGTTCCGCTTAGTTATTTT AGTTTCAGACATCTAACCCCGCTTAATGAATATCTGCGCCGTTGTCCTTC ACTGCTTAATGGGATGTATTTATAACGAATACAACATTCAAAATAGAGCT TTGGAGGAGCTTCGCGCGTCGCACAACCAAATCTCCGAAGTTCCCGCGTC GCTAGCCGCAAACATCGCCCTGAGAACTCTCGACCTTGGCCACAACGAGA TAGGGGAGTGGCGAGGTCTGGAGAAGCTGGGAAAGTCGCTAACGTCTCTC GTACAGCTTAGCTTGTCCGGAAACCCACTCTGCGCATCGGCCACGGGTGT CTCTGTCGAGGACGACGGGGGGGACGACGAGACGTACGTGACTAAGGTCA TGTCCATGTTCCCTGCTCTAAAAGTACGAGACGCCAAGAGAGTTTTGAAG AAGAAGAGTCATACCTATTACGAGCAGCGGGCAATGATGGAGTTGGATGG AGCGGAGAAGGGGGGTGCAAGGGTGGATAACGCGAAGCGAGAAACTCCGG GGGACGGCGGCAGGGGACGCGAGGTGGAGATGGAACAAGATGGCCCCAAG AGCAAATCAGTAAAAAAAAAGAGCAAGAAAATCACGACCAGAGAGGAGCA AGGAAGCACGAAGACGGGTGGGGTTAGCAAGAGCAGCCAAGGTGGCGTGG CGGAGATGGGCATCGAGCGTGAGGAAGAGGCGGTGGTCACGGGCAGGAAA GCTAGTGCTGTGAAAAACGATCATGAACGGCACGCGAAGAGGAAGAGGAA GAGCGATGGGGGGGGAGTGTCGCTGGGGAAGGAAAGTGTCACGCCTCATA ATGAGGAGTCCACAGAGCCTCGAAGTTCGAAGTCAGTGAAAAAGAAGAAA ATACGAGCAGGGGACGAAGGCGCTGGTTCCGGGGTTATGGCCAACGGCAA TCAGACAGCAGTAGCAGTGGCAGAACCAGAAGTAGCATCACTGGATACGA CCGATAGCCTTGCTGGCTGCAAGCACTCGGGGTCAGAGGAGCAGAGACGG AAGAAAAACGTCAGAGAGAAAAACGCGAAAAAGAGGACGTCGTCAACCGG TCTCCCTTCTAGTAGTAGCAAAGACGACGCTGAGACGATCACGGGAAGCA TCGTGGATAAGGACCCTTATTCTTCCTCTGAGGAGCTGCCGATCCCGGGA GCGCAAAGGCAGCGGGCGCAACACCAGGGTGGCAACCATCCGGGCAACAC TGTGGCTGGAGTTCAGTCAGAATCGGGGGTGGTTGCCGTGGTCGTGAACC ACAAGAGTAGCAAAAAGAAGAAAAACAAACGAAGTAGTGGCAACAAGGTG AAGGTGCGAACAGCGCCATCTCAGCGTAGCGGCAGCGGCGAGGTCGGGGA GGGTGATGGGGAAGGAGGTAGCGACGTTGGGGAAGAAGAAGGAGGTGGCT TTTCTATGGAAAGCATGCTGATGGCCAGGGAGTCATGCATGGGGCCTGGA GTAGGAGGCGGGGTGTCTGCATGGGACTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8348:7287..10016-

>mRNA_H-paniculata_contig8348.16364.1 ID=mRNA_H-paniculata_contig8348.16364.1|Name=mRNA_H-paniculata_contig8348.16364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3192bp|location=Sequence derived from alignment at H-paniculata_contig8348:7287..10016- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCACCTATCTCACCGCGGCCGCGAACGAGCTGACGGGTGAGGGTCTGGA
TGGGGTCCGCCCATTGCGTGATCTCACCGTTTTCAACGCCTCCGGCAATC
GGCTGAAGCGGGTGCCGGCGGCGGTGTTTGCGCAATTCCGAGCGTTGCAG
GCTTTGGTGTTGAATAACAACGAGATCGCAGAGGTTCCGCCGACATGGCT
CAAGAAGGGCTTGTTCAACCTGAACACTCTGGTGCTGAGCCATAACAAGG
TCACCTATCTCACCGCGGCCGCGAACGAGCTGACGGGTGAGGGTCTGGAT
GGGGTCCGCCCATTGCGTGATCTCACCGTTTTCAACGCCTCCGGCAATCG
GCTGAAGCGGGTGCCGGCGGCGGTGTTTGCGCAATTCCGAGCGTTGCAGG
CTTTGGTGTTGAATAACAACGAGATCGCAGAGGTTCCGCCGACATGGCTC
AAGAAGGGCTTGTTCAACCTGAACACTCTGGTGCTGAGCCATAACAAGGT
GAAATCTTTGAAGGACACGGGTCTCGGACGTCTGACGGCGCTCACCAAGC
TCTCCATATCACACAACCTTCTGCATGAGCTTCCTGACCTGTCCGCGTGC
AGGTGAAATCTTTGAAGGACACGGGTCTCGGACGTCTGACGGCGCTCACC
AAGCTCTCCATATCACACAACCTTCTGCATGAGCTTCCTGACCTGTCCGC
GTGCAGAGCTTTGGAGGAGCTTCGCGCGTCGCACAACCAAATCTCCGAAG
TTCCCGCGTCGCTAGCCGCAAACATCGCCCTGAGAACTCTCGACCTTGGC
CACAACGAGATAGGGGAGTGGCGAGGTCTGGAGAAGCTGGGAAAGTCGCT
AACGTCTCTCGTACAGCTTAGCTTGTCCGGAAACCCACTCTGCGCATCGG
CCACGGGTGTCTCTGTCGAGGACGACGGGGGGGACGACGAGACGTACGTG
ACTAAGGTCATGTCCATGTTCCCTGCTCTAAAAGTACGAGACGCCAAGAG
AGTTTTGAAGAAGAAGAGTCATACCTATTACGAGCAGCGGGCAATGATGG
AGTTGGATGGAGCGGAGAAGGGGGGTGCAAGGGTGGATAACGCGAAGCGA
GAAACTCCGGGGGACGGCGGCAGGGGACGCGAGGTGGAGATGGAACAAGA
TGGCCCCAAGAGCAAATCAGTAAAAAAAAAGAGCAAGAAAATCACGACCA
GAGAGGAGCAAGGAAGCACGAAGACGGGTGGGGTTAGCAAGAGCAGCCAA
GGTGGCGTGGCGGAGATGGGCATCGAGCGTGAGGAAGAGGCGGTGGTCAC
GGGCAGGAAAGCTAGTGCTGTGAAAAACGATCATGAACGGCACGCGAAGA
GGAAGAGGAAGAGCGATGGGGGGGGAGTGTCGCTGGGGAAGGAAAGTGTC
ACGCCTCATAATGAGGAGTCCACAGAGCCTCGAAGTTCGAAGTCAGTGAA
AAAGAAGAAAATACGAGCAGGGGACGAAGGCGCTGGTTCCGGGGTTATGG
CCAACGGCAATCAGACAGCAAGCTTTGGAGGAGCTTCGCGCGTCGCACAA
CCAAATCTCCGAAGTTCCCGCGTCGCTAGCCGCAAACATCGCCCTGAGAA
CTCTCGACCTTGGCCACAACGAGATAGGGGAGTGGCGAGGTCTGGAGAAG
CTGGGAAAGTCGCTAACGTCTCTCGTACAGCTTAGCTTGTCCGGAAACCC
ACTCTGCGCATCGGCCACGGGTGTCTCTGTCGAGGACGACGGGGGGGACG
ACGAGACGTACGTGACTAAGGTCATGTCCATGTTCCCTGCTCTAAAAGTA
CGAGACGCCAAGAGAGTTTTGAAGAAGAAGAGTCATACCTATTACGAGCA
GCGGGCAATGATGGAGTTGGATGGAGCGGAGAAGGGGGGTGCAAGGGTGG
ATAACGCGAAGCGAGAAACTCCGGGGGACGGCGGCAGGGGACGCGAGGTG
GAGATGGAACAAGATGGCCCCAAGAGCAAATCAGTAAAAAAAAAGAGCAA
GAAAATCACGACCAGAGAGGAGCAAGGAAGCACGAAGACGGGTGGGGTTA
GCAAGAGCAGCCAAGGTGGCGTGGCGGAGATGGGCATCGAGCGTGAGGAA
GAGGCGGTGGTCACGGGCAGGAAAGCTAGTGCTGTGAAAAACGATCATGA
ACGGCACGCGAAGAGGAAGAGGAAGAGCGATGGGGGGGGAGTGTCGCTGG
GGAAGGAAAGTGTCACGCCTCATAATGAGGAGTCCACAGAGCCTCGAAGT
TCGAAGTCAGTGAAAAAGAAGAAAATACGAGCAGGGGACGAAGGCGCTGG
TTCCGGGGTTATGGCCAACGGCAATCAGACAGCACACTCGGGGTCAGAGG
AGCAGAGACGGAAGAAAAACGTCAGAGAGAAAAACGCGAAAAAGAGGACG
TCGTCAACCGGTCTCCCTTCTAGTAGTAGCAAAGACGACGCTGAGACGAT
CACGGGAAGCATCGTGGATAAGGACCCTTATTCTTCCTCTGAGGAGCTGC
CGATCCCGGGAGCGCAAAGGCAGCGGGCGCAACACCAGGGTGGCAACCAT
CCGGGCAACACTGTGGCTGGAGTTCAGTCAGAATCGGGGGTGGTTGCCGT
GGTCGTGAACCACAAGAGTAGCAAAAAGAAGAAAAACAAACGAAGTACAC
TCGGGGTCAGAGGAGCAGAGACGGAAGAAAAACGTCAGAGAGAAAAACGC
GAAAAAGAGGACGTCGTCAACCGGTCTCCCTTCTAGTAGTAGCAAAGACG
ACGCTGAGACGATCACGGGAAGCATCGTGGATAAGGACCCTTATTCTTCC
TCTGAGGAGCTGCCGATCCCGGGAGCGCAAAGGCAGCGGGCGCAACACCA
GGGTGGCAACCATCCGGGCAACACTGTGGCTGGAGTTCAGTCAGAATCGG
GGGTGGTTGCCGTGGTCGTGAACCACAAGAGTAGCAAAAAGAAGAAAAAC
AAACGAAGTAGAGGTAGCGACGTTGGGGAAGAAGAAGGAGGTGGCTTTTC
TATGGAAAGCATGCTGATGGCCAGGGAGTCATGCATGGGGCCTGGAGTAG
GAGGCGGGGTGTCTGCATGGGACTGAGAGGTAGCGACGTTGGGGAAGAAG
AAGGAGGTGGCTTTTCTATGGAAAGCATGCTGATGGCCAGGGAGTCATGC
ATGGGGCCTGGAGTAGGAGGCGGGGTGTCTGCATGGGACTGA
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