mRNA_H-paniculata_contig8332.16348.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8332.16348.1
Unique NamemRNA_H-paniculata_contig8332.16348.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8332.16348.1 vs. uniprot
Match: A0A6H5L827_9PHAE (SulP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L827_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 2.890e-36
Identity = 70/93 (75.27%), Postives = 79/93 (84.95%), Query Frame = 1
Query:    1 FLPTSVLAALIYAVIFKFFDFAEPFRLYRVSAGDMFMWVATFAATIGLSVKEGIVVGMAVSAFTLIQRSSTPLVSHLGCLPGTDHYRDIKCYP 279
            FLPTSVLAA IYAVI+KFF F EPF+LYRV   D  MW+ATFAAT+ LSV++GIVVGMAVSAFTLIQRSS+PLV H+G LPGT  YRD+K YP
Sbjct:  237 FLPTSVLAATIYAVIYKFFHFDEPFKLYRVGVSDTVMWLATFAATMLLSVRDGIVVGMAVSAFTLIQRSSSPLVMHMGLLPGTTLYRDMKTYP 329          
BLAST of mRNA_H-paniculata_contig8332.16348.1 vs. uniprot
Match: A0A3M1WQX2_9BACT (Solute carrier 26 family protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1WQX2_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 2.680e-16
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    1 FLPTSVLAALIYAVIFKFFDFAEPFRLYRVSAGDMFMWVATFAATIGLSVKEGIVVGMAVSAFTLIQRSSTPLVSHLGCLPGTDHYRDIKCYP 279
            FLP + LA++I   +F   D+ E   L++    D FM +ATF AT+GL ++EGI+VG+A+S   +I RSS P ++ LG +PGT  YR+I+ +P
Sbjct:  350 FLPKATLASVIMVAVFGLIDWKEAVHLWKAKRDDFFMLLATFVATLGLGIEEGILVGVALSIAMVIYRSSYPHIAVLGRVPGTTQYRNIERFP 442          
BLAST of mRNA_H-paniculata_contig8332.16348.1 vs. uniprot
Match: A0A651DU70_9BACT (Solute carrier 26 family protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A651DU70_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 6.020e-15
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 1
Query:    4 LPTSVLAALIYAVIFKFFDFAEPFRLYRVSAGDMFMWVATFAATIGLSVKEGIVVGMAVSAFTLIQRSSTPLVSHLGCLPGTDHYRDIKCYP 279
            LPT+VLAA++   +    ++ E   L+RV   D +M   TFAAT+GL ++EGI+VG+ VS   L+  +S P  + LG LPGTD YR++  +P
Sbjct:  351 LPTTVLAAIVIVAVANLVNWREAVHLWRVDRQDFWMMAITFAATLGLGIEEGILVGVLVSLGALVYETSRPHAAVLGRLPGTDTYRNLARHP 442          
BLAST of mRNA_H-paniculata_contig8332.16348.1 vs. uniprot
Match: A0A651FY17_9BACT (Solute carrier 26 family protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A651FY17_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 3.920e-14
Identity = 38/95 (40.00%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    1 FLPTSVLAALIYAVIFKFFDFAEPFRLYRVSAGDMFMWVATFAATIGLSVKEGIVVGMAVSAFTLIQRSSTPLVSHLGCLPGTDHYRDIKCYPGE 285
            +LP +VL A+I   +F   D+ E  RL+++   D +M++ATFA T+ + +KEGI++G+ +S   L+ RS+ P  + +G +PGT  YR IK Y  E
Sbjct:  376 YLPNAVLGAIIIVAVFGLIDYKEFKRLWKIGHYDRYMFLATFAGTLFVGIKEGILLGVTLSVIMLLYRSARPNHAVIGKIPGTSVYRSIKRYETE 470          
BLAST of mRNA_H-paniculata_contig8332.16348.1 vs. uniprot
Match: A0A6N2D0E0_9DELT (Sulfate permease n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A6N2D0E0_9DELT)

HSP 1 Score: 75.5 bits (184), Expect = 7.300e-14
Identity = 38/93 (40.86%), Postives = 60/93 (64.52%), Query Frame = 1
Query:    4 LPTSVLAALIYAVIFKFFDFAEPFRLYRVSAGDMFMWVATFAATIGLSVKEGIVVGMAVSAFTLIQRSSTPLVSHLGCLPGTDHYRDIKCYPG 282
            LPT+ LAA+I   +    DFAE  RL RV   DM++ + TFAAT+G+ +++GI+VG+A S    + R++ P  + LG L  +  YR+++ +PG
Sbjct:  367 LPTATLAAIIITAVLGLTDFAEVRRLARVKRADMWLLLITFAATLGIGIEQGILVGVAASLMLFLYRTTRPHAAVLGRLGDSTDYRNVRNHPG 459          
BLAST of mRNA_H-paniculata_contig8332.16348.1 vs. uniprot
Match: A0A651HCL5_9BACT (Solute carrier 26 family protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A651HCL5_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 1.370e-13
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 1
Query:    4 LPTSVLAALIYAVIFKFFDFAEPFRLYRVSAGDMFMWVATFAATIGLSVKEGIVVGMAVSAFTLIQRSSTPLVSHLGCLPGTDHYRDIKCYP 279
            LP +VLAA++   +    ++ E   L+RV   D  M + TFAAT+GL ++EGI+VG+  S   L+ ++S P  + LG LPGTD +R++  +P
Sbjct:  351 LPNAVLAAIVMVAVANLVNWREALHLWRVDRQDFAMMMVTFAATLGLGIEEGILVGVLASLGALVYKTSRPHAAVLGRLPGTDTFRNLSRHP 442          
BLAST of mRNA_H-paniculata_contig8332.16348.1 vs. uniprot
Match: A0A2N2JG15_9DELT (Sodium-independent anion transporter n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 TaxID=2013741 RepID=A0A2N2JG15_9DELT)

HSP 1 Score: 73.9 bits (180), Expect = 2.540e-13
Identity = 37/93 (39.78%), Postives = 60/93 (64.52%), Query Frame = 1
Query:    1 FLPTSVLAALIYAVIFKFFDFAEPFRLYRVSAGDMFMWVATFAATIGLSVKEGIVVGMAVSAFTLIQRSSTPLVSHLGCLPGTDHYRDIKCYP 279
            +LP +VLAA+I   +    +  E  RL+RV   D+   V TFAAT+GL +++GI++G+A S   L+ +++ P  + LG LP T +YR++K +P
Sbjct:  350 YLPKAVLAAIIVTAVLGLIEVGEVRRLWRVKRSDLVFLVVTFAATLGLGIQQGILIGVATSIGWLVIKTTRPHTAVLGRLPQTTYYRNVKNHP 442          
BLAST of mRNA_H-paniculata_contig8332.16348.1 vs. uniprot
Match: A0A6I7QEI1_9BACT (Solute carrier 26 family protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6I7QEI1_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 8.830e-13
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    1 FLPTSVLAALIYAVIFKFFDFAEPFRLYRVSAGDMFMWVATFAATIGLSVKEGIVVGMAVSAFTLIQRSSTPLVSHLGCLPGTDHYRDIKCYPGE 285
            FLP +VLAA+I   +F   ++    RL+ +   D +M +ATF  T+ + +KEGI++G+A+S   L+ RS+ P  S +G +PGT  YR I+ Y  E
Sbjct:  367 FLPNAVLAAIIMVSVFGLIEYGGFKRLWNLGHYDRYMLLATFFGTLFIGIKEGILIGVALSVIMLLYRSARPNYSIMGRIPGTSIYRSIERYDTE 461          
BLAST of mRNA_H-paniculata_contig8332.16348.1 vs. uniprot
Match: A0A3M2A8H1_9DELT (Sulfate permease n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M2A8H1_9DELT)

HSP 1 Score: 70.1 bits (170), Expect = 5.730e-12
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    4 LPTSVLAALIYAVIFKFFDFAEPFRLYRVSAGDMFMWVATFAATIGLSVKEGIVVGMAVSAFTLIQRSSTPLVSHLGCLPGTDHYRDIKCYPGE 285
            LPT+VLAA+I   + + FD  +   + R  A D     ATFAAT+GL + EG+ VG+ ++    + RS+ P  + LG +PGT+ YR++  Y  E
Sbjct:  345 LPTAVLAAIIAVSVARLFDVRKAITITRTKATDGLTVAATFAATLGLGLVEGLAVGIVLALLVFVGRSAMPHSAELGRIPGTEVYRNVLRYDVE 438          
BLAST of mRNA_H-paniculata_contig8332.16348.1 vs. uniprot
Match: A0A5Q4F4S4_9BACT (Sulfate permease n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A5Q4F4S4_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 7.790e-12
Identity = 35/95 (36.84%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    1 FLPTSVLAALIYAVIFKFFDFAEPFRLYRVSAGDMFMWVATFAATIGLSVKEGIVVGMAVSAFTLIQRSSTPLVSHLGCLPGTDHYRDIKCYPGE 285
            +LPT++LAA+I   +F   ++ E  RL+ +   D ++++ATFA T+ + +KEGI++G+ +S   L+ RS+ P  + +G +PGT  +RD   Y  E
Sbjct:  349 YLPTAILAAIIMVSVFGLIEWHEFRRLWGLGHYDRYLFLATFAGTLFIGIKEGILLGVTLSVVMLLYRSARPNFAVMGRIPGTKIFRDASKYKTE 443          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8332.16348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L827_9PHAE2.890e-3675.27SulP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A3M1WQX2_9BACT2.680e-1644.09Solute carrier 26 family protein n=1 Tax=Bacteroid... [more]
A0A651DU70_9BACT6.020e-1543.48Solute carrier 26 family protein n=1 Tax=Gemmatimo... [more]
A0A651FY17_9BACT3.920e-1440.00Solute carrier 26 family protein n=1 Tax=Balneolac... [more]
A0A6N2D0E0_9DELT7.300e-1440.86Sulfate permease n=1 Tax=Deltaproteobacteria bacte... [more]
A0A651HCL5_9BACT1.370e-1340.22Solute carrier 26 family protein n=1 Tax=Gemmatimo... [more]
A0A2N2JG15_9DELT2.540e-1339.78Sodium-independent anion transporter n=1 Tax=Delta... [more]
A0A6I7QEI1_9BACT8.830e-1340.00Solute carrier 26 family protein n=1 Tax=Balneolac... [more]
A0A3M2A8H1_9DELT5.730e-1239.36Sulfate permease n=1 Tax=Deltaproteobacteria bacte... [more]
A0A5Q4F4S4_9BACT7.790e-1236.84Sulfate permease n=1 Tax=Balneolaceae bacterium Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8332contigH-paniculata_contig8332:9472..10306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.6
Seed ortholog evalue5.8e-11
Seed eggNOG ortholog321332.CYB_1923
Preferred namesulP
KEGG koko:K03321
KEGG TC2.A.53.3
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Sulfate permease
EggNOG OGs1G0NU@1117,1GZA7@1129,COG0659@1,COG0659@2
COG Functional cat.P
Best tax levelSynechococcus
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931047.0498464-CDS-H-paniculata_contig8332:9471..95561622931047.0498464-CDS-H-paniculata_contig8332:9471..9556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8332 9472..9556 -
1691481565.465468-CDS-H-paniculata_contig8332:9471..95561691481565.465468-CDS-H-paniculata_contig8332:9471..9556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8332 9472..9556 -
1622931047.0671284-CDS-H-paniculata_contig8332:10103..103061622931047.0671284-CDS-H-paniculata_contig8332:10103..10306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8332 10104..10306 -
1691481565.484686-CDS-H-paniculata_contig8332:10103..103061691481565.484686-CDS-H-paniculata_contig8332:10103..10306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8332 10104..10306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8332.16348.1prot_H-paniculata_contig8332.16348.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8332 9472..10306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8332.16348.1

>prot_H-paniculata_contig8332.16348.1 ID=prot_H-paniculata_contig8332.16348.1|Name=mRNA_H-paniculata_contig8332.16348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
FLPTSVLAALIYAVIFKFFDFAEPFRLYRVSAGDMFMWVATFAATIGLSV
KEGIVVGMAVSAFTLIQRSSTPLVSHLGCLPGTDHYRDIKCYPGE*
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mRNA from alignment at H-paniculata_contig8332:9472..10306-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8332.16348.1 ID=mRNA_H-paniculata_contig8332.16348.1|Name=mRNA_H-paniculata_contig8332.16348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=835bp|location=Sequence derived from alignment at H-paniculata_contig8332:9472..10306- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTTGCCCACGTCCGTCCTAGCTGCCCTGATTTACGCCGTGATCTTCAA GTTCTTTGATTTCGCGGAGCCGTTTCGTCTGTACCGCGTGAGCGCTGGAG ATATGTTTATGTGGGTGGCGACGTTCGCAGCTACGATCGGATTGAGTGTG AAGGAAGGGATTGTGGTTGGCATGGCTGTCAGTGCCTTTACTCTCATCCA AAGGTACGATACTGCGAAGTGCGGTTTTGCTCTTCATCATGTTTCCCGTG TATTAGCGTTGACTACTTTGTGCTATCGTTGTGGGCTGATGGTGCACAGT AGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTGTATAT GTTTGCACATGTGCTTGGTTTTCGGGAATGTACGGTACTGTCGGATCGAC CGTTTCGGTTTTATGTCAAAGGCCGGTAGTTAACCACGTATCACATAACT GACTTCGATTAGGATCTTCAGTTTGAGAGCAATCGAGGTGAACAAGTGTT CAGCCATGTACGTGGGTGATGGCTAACACAACGTTCAGCGGTGGCCCGCG AGGAGTTCAAGTTGACGTTTGCTAGCTTGCTCTTGACGTGAGAGAAATGC TTTTCTAGAGCTGCAGAACCCCGGCCGCGAAGATACACATCAACTCCGGG AGTCTCTGCTGCATCCATCAGAACTTAACGGCGAAATCCATTGTACTTCT CACCCTAACACCGCTCTCCCTCCTTAATACCTGCTCTTTATCACACTCAG ATCATCTACCCCCCTGGTGTCGCACTTGGGATGCCTCCCCGGAACAGATC ACTATCGCGATATCAAATGCTACCCGGGTGAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8332:9472..10306-

>mRNA_H-paniculata_contig8332.16348.1 ID=mRNA_H-paniculata_contig8332.16348.1|Name=mRNA_H-paniculata_contig8332.16348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig8332:9472..10306- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTTGCCCACGTCCGTCCTAGCTGCCCTGATTTACGCCGTGATCTTCAA
GTTCTTTGATTTCGCGGAGCCGTTTCGTCTGTACCGCGTGAGCGCTGGAG
ATATGTTTATGTGGGTGGCGACGTTCGCAGCTACGATCGGATTGAGTGTG
AAGGAAGGGATTGTGGTTGGCATGGCTGTCAGTGCCTTTACTCTCATCCA
AAGTTCTTGCCCACGTCCGTCCTAGCTGCCCTGATTTACGCCGTGATCTT
CAAGTTCTTTGATTTCGCGGAGCCGTTTCGTCTGTACCGCGTGAGCGCTG
GAGATATGTTTATGTGGGTGGCGACGTTCGCAGCTACGATCGGATTGAGT
GTGAAGGAAGGGATTGTGGTTGGCATGGCTGTCAGTGCCTTTACTCTCAT
CCAAAGATCATCTACCCCCCTGGTGTCGCACTTGGGATGCCTCCCCGGAA
CAGATCACTATCGCGATATCAAATGCTACCCGGGTGAGTGAATCATCTAC
CCCCCTGGTGTCGCACTTGGGATGCCTCCCCGGAACAGATCACTATCGCG
ATATCAAATGCTACCCGGGTGAGTGA
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