mRNA_H-paniculata_contig8327.16341.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8327.16341.1
Unique NamemRNA_H-paniculata_contig8327.16341.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8327.16341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8327contigH-paniculata_contig8327:1403..2042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size329
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8327.16341.1prot_H-paniculata_contig8327.16341.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8327 1489..2036 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.7995415-UTR-H-paniculata_contig8327:1402..14881622931045.7995415-UTR-H-paniculata_contig8327:1402..1488Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8327 1403..1488 +
1691481564.933466-UTR-H-paniculata_contig8327:1402..14881691481564.933466-UTR-H-paniculata_contig8327:1402..1488Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8327 1403..1488 +
1622931045.862646-UTR-H-paniculata_contig8327:2036..20421622931045.862646-UTR-H-paniculata_contig8327:2036..2042Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8327 2037..2042 +
1691481564.965889-UTR-H-paniculata_contig8327:2036..20421691481564.965889-UTR-H-paniculata_contig8327:2036..2042Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8327 2037..2042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.8278017-CDS-H-paniculata_contig8327:1488..15751622931045.8278017-CDS-H-paniculata_contig8327:1488..1575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8327 1489..1575 +
1691481564.9443057-CDS-H-paniculata_contig8327:1488..15751691481564.9443057-CDS-H-paniculata_contig8327:1488..1575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8327 1489..1575 +
1622931045.843693-CDS-H-paniculata_contig8327:1886..20361622931045.843693-CDS-H-paniculata_contig8327:1886..2036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8327 1887..2036 +
1691481564.955564-CDS-H-paniculata_contig8327:1886..20361691481564.955564-CDS-H-paniculata_contig8327:1886..2036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8327 1887..2036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8327.16341.1

>prot_H-paniculata_contig8327.16341.1 ID=prot_H-paniculata_contig8327.16341.1|Name=mRNA_H-paniculata_contig8327.16341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MEDVERRSRRGLVASTDQPFAMDRLNAKAVKRVMVEMYHATKRTFAHELA
KEVASSPIRMLHVNVDLRTAKTSVHKDK*
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mRNA from alignment at H-paniculata_contig8327:1403..2042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8327.16341.1 ID=mRNA_H-paniculata_contig8327.16341.1|Name=mRNA_H-paniculata_contig8327.16341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=640bp|location=Sequence derived from alignment at H-paniculata_contig8327:1403..2042+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAGCTTTCAAGGACGACAAGAATCGCTTCGTAATGATGAATTTCACTA
AGACACACTGTTCGCCGCTTCCTGCCTTCCTCCTTTATGGAGGACGTGGA
GCGCCGAAGCAGGCGGGGGCTAGTGGCATCCACAGACCAGCCATTTGCGA
TGGACAGGCTGAACGCGAAGGCGGTGAGCCTTTGTGTAGGGTATGACTAT
TTCGTGCTCTTTCGTAGCCCTGGTGACCTTTGGTGTTTTTAACTCGGTTC
TCAGTACCTCTTCACCGTCTGTCTGGTTTACACAGCCTTTCCGTGGTGGT
GTAGTACGACAATGTATACAGTGACCCGGTAAAACAAATACTCTGAATGT
AGGTTCTACTGACTGTACACTGGAGAGGCCACCTGGTGATCGACATTTCT
CGTCTGTTGCCATTCCTCTAGTGAGCACAATTCACACGTCTACACAGGGC
GTGTTTCTGTTCGTTGGCGTCATTACACATACAGGTGAAAAGAGTCATGG
TGGAGATGTACCATGCCACGAAAAGGACCTTCGCGCATGAGTTGGCAAAA
GAGGTGGCATCGTCGCCTATCCGCATGCTACACGTGAACGTCGACTTACG
GACTGCCAAGACATCAGTGCATAAAGACAAGTAGATGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig8327:1403..2042+

>mRNA_H-paniculata_contig8327.16341.1 ID=mRNA_H-paniculata_contig8327.16341.1|Name=mRNA_H-paniculata_contig8327.16341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig8327:1403..2042+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGACGTGGAGCGCCGAAGCAGGCGGGGGCTAGTGGCATCCACAGA
CCAGCCATTTGCGATGGACAGGCTGAACGCGAAGGCGATGGAGGACGTGG
AGCGCCGAAGCAGGCGGGGGCTAGTGGCATCCACAGACCAGCCATTTGCG
ATGGACAGGCTGAACGCGAAGGCGGTGAAAAGAGTCATGGTGGAGATGTA
CCATGCCACGAAAAGGACCTTCGCGCATGAGTTGGCAAAAGAGGTGGCAT
CGTCGCCTATCCGCATGCTACACGTGAACGTCGACTTACGGACTGCCAAG
ACATCAGTGCATAAAGACAAGTAGGTGAAAAGAGTCATGGTGGAGATGTA
CCATGCCACGAAAAGGACCTTCGCGCATGAGTTGGCAAAAGAGGTGGCAT
CGTCGCCTATCCGCATGCTACACGTGAACGTCGACTTACGGACTGCCAAG
ACATCAGTGCATAAAGACAAGTAG
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