mRNA_H-paniculata_contig8313.16333.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8313.16333.1
Unique NamemRNA_H-paniculata_contig8313.16333.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8313.16333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8313contigH-paniculata_contig8313:3472..3633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionTaurine dioxygenase TauD-like superfamily domain protein
Ec32 orthologEc-06_002320.1
Exons1
Model size162
Cds size141
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931044.0976045-CDS-H-paniculata_contig8313:3471..36121622931044.0976045-CDS-H-paniculata_contig8313:3471..3612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8313 3472..3612 -
1691481564.0824704-CDS-H-paniculata_contig8313:3471..36121691481564.0824704-CDS-H-paniculata_contig8313:3471..3612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8313 3472..3612 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931044.1125655-UTR-H-paniculata_contig8313:3612..36331622931044.1125655-UTR-H-paniculata_contig8313:3612..3633Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8313 3613..3633 -
1691481564.0929139-UTR-H-paniculata_contig8313:3612..36331691481564.0929139-UTR-H-paniculata_contig8313:3612..3633Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8313 3613..3633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8313.16333.1prot_H-paniculata_contig8313.16333.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8313 3472..3612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8313.16333.1

>prot_H-paniculata_contig8313.16333.1 ID=prot_H-paniculata_contig8313.16333.1|Name=mRNA_H-paniculata_contig8313.16333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
MQGCYVNIDDFMNKLSILHVQQPASDDPVMNQLTRAGNGSLPHVDY*
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mRNA from alignment at H-paniculata_contig8313:3472..3633-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8313.16333.1 ID=mRNA_H-paniculata_contig8313.16333.1|Name=mRNA_H-paniculata_contig8313.16333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at H-paniculata_contig8313:3472..3633- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGGCAAAGGGGTGAGGCTCATGCAGGGCTGCTACGTGAACATTGACGA
TTTCATGAACAAGCTATCTATTCTTCACGTGCAACAGCCAGCTTCGGATG
ACCCGGTGATGAACCAGCTTACCAGGGCTGGAAACGGCTCTCTACCCCAC
GTGGACTACTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8313:3472..3633-

>mRNA_H-paniculata_contig8313.16333.1 ID=mRNA_H-paniculata_contig8313.16333.1|Name=mRNA_H-paniculata_contig8313.16333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig8313:3472..3633- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGGCTGCTACGTGAACATTGACGATTTCATGAACAAGCTATCTAT
TCTTCACGTGCAACAGCCAGCTTCGGATGACCCGGTGATGAACCAGCTTA
CCAGGGCTGGAAACGGCTCTCTACCCCACGTGGACTACTGAATGCAGGGC
TGCTACGTGAACATTGACGATTTCATGAACAAGCTATCTATTCTTCACGT
GCAACAGCCAGCTTCGGATGACCCGGTGATGAACCAGCTTACCAGGGCTG
GAAACGGCTCTCTACCCCACGTGGACTACTGA
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