mRNA_H-paniculata_contig8306.16330.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8306.16330.1 vs. uniprot
Match: D7G222_ECTSI (Glycosyltransferase, family GT34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G222_ECTSI) HSP 1 Score: 320 bits (821), Expect = 6.590e-98 Identity = 160/247 (64.78%), Postives = 184/247 (74.49%), Query Frame = 1
Query: 1 LSLRIGRVVCTRFVDIDAFVMNPYFKLEWLLDVAAKQQQTGGLDGWGIKGKDADLIVTKDWNGPNSGVILIKNSEFSRWLLKEWWAQDQFVRGNFPFHYEQRAMHYLLQPDSWQNAGLPFYADNNLVRERTAVIDQCAMNSYLIHPWQGLLGRTRDLGEAASYIEGDFMLHFAGKKGRVREELVEYYYPKAKQAIEDYSTEIQLGKPEASETVKLTAPREHG---------------GGRRGGRLRG 696
LS +G FVDIDAFVMNP FKLEWLLDVA KQQQTGG+DGWG GK++DLIVT+DWNGPNSGVILIKNS+FSRWLL+EWW Q QFV G +PFHYEQRAMHYLLQ D W+ GLPFYAD +VR TAV+DQCAMNSYL+HPWQ LLGRT +G AA Y GDFMLHFAGKKGRVR ELV+YYYP+AK+A+E+Y+ +Q +A+ + + HG GG RGG LRG
Sbjct: 224 LSKHLGSYDYVIFVDIDAFVMNPAFKLEWLLDVARKQQQTGGIDGWGA-GKESDLIVTQDWNGPNSGVILIKNSDFSRWLLQEWWDQKQFVNGPYPFHYEQRAMHYLLQTDCWKEEGLPFYADYAVVRAHTAVLDQCAMNSYLVHPWQVLLGRT-SVGSAARYESGDFMLHFAGKKGRVRLELVDYYYPRAKKAMEEYAASLQQDSGQANRSAPNVSVGVHGAPGGDMQPPPSRMQGGGGRGGSLRG 468
BLAST of mRNA_H-paniculata_contig8306.16330.1 vs. uniprot
Match: A0A6H5L917_9PHAE (GT34 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L917_9PHAE) HSP 1 Score: 311 bits (798), Expect = 1.750e-92 Identity = 150/222 (67.57%), Postives = 174/222 (78.38%), Query Frame = 1
Query: 1 LSLRIGRVVCTRFVDIDAFVMNPYFKLEWLLDVAAKQQQTGGLDGWGIKGKDADLIVTKDWNGPNSGVILIKNSEFSRWLLKEWWAQDQFVRGNFPFHYEQRAMHYLLQPDSWQNAGLPFYADNNLVRERTAVIDQCAMNSYLIHPWQGLLGRTRDLGEAASYIEGDFMLHFAGKKGRVREELVEYYYPKAKQAIEDYSTEIQLGKPEASETVKLTAPREHG 666
LS +G FVDIDAFVMNP FKLEWLLDVA KQQQTG +DGWG G +DLIVT+DWNGPNSGVIL+KNS+FSRWLL+EWW Q QFV G +PFHYEQRAMHYLLQ D W+ GLPFYAD +VR TAV+DQCAMNSYL+HPWQ LLGRT +G AASY GDFMLHFAGKKGRVR ELV+YYYP+AK+A+E+Y+ +Q +A+ + + HG
Sbjct: 396 LSKHLGSYDYVIFVDIDAFVMNPAFKLEWLLDVARKQQQTGEIDGWGA-GNGSDLIVTQDWNGPNSGVILVKNSDFSRWLLQEWWDQKQFVDGPYPFHYEQRAMHYLLQTDCWKEEGLPFYADYAVVRAHTAVLDQCAMNSYLVHPWQVLLGRT-SVGSAASYESGDFMLHFAGKKGRVRLELVDYYYPRAKKAVEEYAASLQQDPGQANRSAPSVSVGVHG 615
BLAST of mRNA_H-paniculata_contig8306.16330.1 vs. uniprot
Match: A0A7S1TVM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVM1_9STRA) HSP 1 Score: 137 bits (345), Expect = 5.010e-33 Identity = 80/205 (39.02%), Postives = 114/205 (55.61%), Query Frame = 1
Query: 40 VDIDAFVMNPYFKLEWLL--DVAAKQQQTGGLDGWGIKGKDADLIVTKDWNGPNSGVILIKNSEFSRWLLKEWWAQDQFV----------RGNFPFHYEQRAMHYLLQPDSWQNAGLPFY-ADNNLVRERTAVIDQCAMNSYLIHPW--QGLLGRT--RDLGEAASYIEGDFMLHFAGKKGRVREELVEYYYPKAKQAIEDYSTE 603
+D DA VMNP +LE L+ D AA+ +LI+T DW+GPNSG++L++N ++ W L E +AQ+ FV + +PF YEQRA+HYLL W+ G P Y D +VR R + QCAMNSY +HP+ + G RD E A YI+GDF++HFAG KG ++ L + A+++ + S E
Sbjct: 17 IDADALVMNPSIRLERLIPADAAAR---------------GVNLILTDDWSGPNSGIMLLRNDAWTYWFLDELYAQELFVNRRPPPGLSAKPQWPFEYEQRALHYLLDTAMWRARGNPAYEGDVAVVRSRVYTLPQCAMNSYFLHPFMRRNFKGELPLRDFFETAQYIDGDFVIHFAGYKGARKQNLFSTFADMAEESAQRLSEE 206
BLAST of mRNA_H-paniculata_contig8306.16330.1 vs. uniprot
Match: A0A7S1XNR5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNR5_9STRA) HSP 1 Score: 137 bits (345), Expect = 1.220e-31 Identity = 80/205 (39.02%), Postives = 114/205 (55.61%), Query Frame = 1
Query: 40 VDIDAFVMNPYFKLEWLL--DVAAKQQQTGGLDGWGIKGKDADLIVTKDWNGPNSGVILIKNSEFSRWLLKEWWAQDQFV----------RGNFPFHYEQRAMHYLLQPDSWQNAGLPFY-ADNNLVRERTAVIDQCAMNSYLIHPW--QGLLGRT--RDLGEAASYIEGDFMLHFAGKKGRVREELVEYYYPKAKQAIEDYSTE 603
+D DA VMNP +LE L+ D AA+ +LI+T DW+GPNSG++L++N ++ W L E +AQ+ FV + +PF YEQRA+HYLL W+ G P Y D +VR R + QCAMNSY +HP+ + G RD E A YI+GDF++HFAG KG ++ L + A+++ + S E
Sbjct: 151 IDADALVMNPSIRLERLIPADAAAR---------------GVNLILTDDWSGPNSGIMLLRNDAWTYWFLDELYAQELFVNRRPPPGLSAKPQWPFEYEQRALHYLLDTAMWRARGNPAYEGDVAVVRSRVYTLPQCAMNSYFLHPFMRRNFKGELPLRDFFETAQYIDGDFVIHFAGYKGARKQNLFSTFADMAEESAQRLSEE 340
BLAST of mRNA_H-paniculata_contig8306.16330.1 vs. uniprot
Match: A0A482SUI0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUI0_9ARCH) HSP 1 Score: 130 bits (328), Expect = 1.110e-29 Identity = 71/188 (37.77%), Postives = 105/188 (55.85%), Query Frame = 1
Query: 37 FVDIDAFVMNPYFKLEWLLDVAAKQQQTGGLDGWGIKGKDADLIVTKDWNGPNSGVILIKNSEFSRWLLKEWWAQDQFVRG------NFPFHYEQRAMHYLLQPDSWQNAGLPFYA-DNNLVRERTAVIDQCAMNSYLIHP--WQGLLGRTRDLGEAASYIEGDFMLHFAGKKGRVREELVEYYYPKA 573
++D+D +MN K E +D+A D D+I+T+DWNGPN+GV L+K S +S W L+ + Q Q V ++PF YEQRA+HYLL W+ GLP ++ D +R + QCAMNSY+++P W G E + Y+ GDFM+HFAGKKG ++ L+ ++ +A
Sbjct: 163 YIDMDIVIMNMTVKAEHFIDMAP----------------DKDMIMTEDWNGPNTGVWLVKKSAWSHWFLQTAFNQTQLVPKKSPEGISYPFEYEQRAVHYLLDTSIWRQRGLPKWSGDIQEIRSHFFFLPQCAMNSYIMYPFYWNGDR-------EQSHYVNGDFMVHFAGKKGAIKTNLMSHFLTQA 327
BLAST of mRNA_H-paniculata_contig8306.16330.1 vs. uniprot
Match: A0A7S1TXZ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXZ2_9STRA) HSP 1 Score: 120 bits (301), Expect = 7.270e-27 Identity = 70/210 (33.33%), Postives = 110/210 (52.38%), Query Frame = 1
Query: 40 VDIDAFVMNPYFKLEWLLDVAAKQQQTGGLDGWGIKGKDADLIVTKDWNGPNSGVILIKNSEFSRWLLKEWWAQDQFV-----------RGNFPFHYEQRAMHYLLQPDSWQNAG-LPFYADNNLVRERTAVIDQCAMNSYLIHPWQGLLGRTRDLGEA--------ASYIEGDFMLHFAGKKGRVREELVEYYYPKAKQAIEDYSTEIQ 609
+D+DA +MNP +LE L+ G + ++++T DW+GPNSGV+L++N ++ W L E +AQ+ F+ R ++PF YEQRA+H+L+ W++ G + + D V R + QCAMNSY +HP+ R GEA + Y++GDF++HFAG KG ++ L + A+ A E Q
Sbjct: 60 IDVDALIMNPAVRLERLIPQ-------------GAAARGVNVVLTSDWSGPNSGVMLLRNDPWTFWFLDELYAQELFLADRVPAPGLSRRLHWPFLYEQRALHFLMDTPLWRHQGNVRYEGDAADVHRRVLELPQCAMNSYFLHPFM----RRNFRGEAPLWSYAEHSQYVDGDFIIHFAGYKGSRKQRLFAAFADDAEAAFSTPDPETQ 252
BLAST of mRNA_H-paniculata_contig8306.16330.1 vs. uniprot
Match: A0A482SJD6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJD6_9ARCH) HSP 1 Score: 121 bits (303), Expect = 2.220e-26 Identity = 69/182 (37.91%), Postives = 99/182 (54.40%), Query Frame = 1
Query: 37 FVDIDAFVMNPYFKLEWLLDVAAKQQQTGGLDGWGIKGKDADLIVTKDWNGPNSGVILIKNSEFSRWLLKEWWAQDQFVRG------NFPFHYEQRAMHYLLQPDSWQNAGLPFY-ADNNLVRERTAVIDQCAMNSYLIHPWQGLLGRTRDLGEAASYIEGDFMLHFAGKKGRVREELVEYY 561
++D+D +MN LE ++ D + + D+I+T DWNG N GV L +N+ +SRW L+ W Q Q + PF YEQRA+HYLL +WQ GLP Y D+ +R+ QCA NSY +HP L RD A Y +GDF++HFAGK+G + +L+++Y
Sbjct: 158 YIDMDIVIMNFSIPLEHFIEA----------DNY-----EHDIILTHDWNGINFGVWLARNTAWSRWFLQSAWNQTQLIPPYATNGIKHPFDYEQRAVHYLLDTQTWQRTGLPSYPGDSADIRKHFQTYPQCAFNSYTLHPMD--LRGNRD---TAQYKQGDFLVHFAGKRGWKKLKLMQHY 319
BLAST of mRNA_H-paniculata_contig8306.16330.1 vs. uniprot
Match: K8EJ29_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EJ29_9CHLO) HSP 1 Score: 123 bits (308), Expect = 2.540e-25 Identity = 71/183 (38.80%), Postives = 93/183 (50.82%), Query Frame = 1
Query: 37 FVDIDAFVMNPYFKLEWLLDVAAKQQQTGGLDGWGIKGKDADLIVTKDWNGPNSGVILIKNSEFSRWLLKEWWAQDQFVRGNFPFHYEQRAMHYLLQPDSWQN---AGLPFYADNNLVRERTAVIDQCAMNSYLIHPWQGLLGRTRDLGEAASYIEGDFMLHFAGKKGRVREELVEYYYPKAK 576
F+DID +MNP +LE + D + D ++ D NG NSGV +KN+ + RW L E WAQ+ VRGN+ FHYEQRA H+L Q + W N Y VR+R+ V++QC NS L PW Y+ GDF++HFAG KG + L YY KAK
Sbjct: 531 FLDIDTLIMNPDIRLEDIAD------------------DNYDQVIGADHNGINSGVWFVKNTRWMRWFLTELWAQEDLVRGNYVFHYEQRAFHHLFQTEVWSNNVGTSKKPYEGAEDVRKRSKVVNQCVFNSLL--PW---------------YVNGDFVVHFAGMKGVAQCYLFWQYYEKAK 678
BLAST of mRNA_H-paniculata_contig8306.16330.1 vs. uniprot
Match: A0A7S2WUX7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUX7_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.550e-22 Identity = 67/205 (32.68%), Postives = 103/205 (50.24%), Query Frame = 1
Query: 37 FVDIDAFVMNPYFKLEWLLDVAAKQQQTGGLDGWGIKGKDADLIVTKDWNGPNSGVILIKNSEFSRWLLKEWWA-----------QDQFVRG-NFPFHYEQRAMHYLLQPDSWQNAGLPFYAD----------NNLVRERTAVIDQCAMNSYLIHPWQGLLGRTRDLGEAASYIEGDFMLHFAGKKGRVREELVEYYYPKAKQAI 585
+ D D VMN KLE L+ DG AD+I+T+DWNG N+GV +++NS ++ W L+E W D+ G +PF YEQRA+HYLLQ + W LP Y + + ++ QCA+NSY+++P G +A ++ GDF++H AG KG +++L Y + ++QA+
Sbjct: 144 YTDADTIVMNQEVKLESLVG-----------DG------SADVIITEDWNGVNTGVFMLRNSTWTYWFLREAWGLQGSEQEHMALHDRSAGGMKYPFEYEQRAVHYLLQTEIWTERHLPRYRPAITFEGALQTSETMWRHVQLLPQCALNSYMLYPSFFRRGYV-----SAQWVAGDFVVHMAGHKGSNKQQLFRYCFRMSQQAM 326
BLAST of mRNA_H-paniculata_contig8306.16330.1 vs. uniprot
Match: A0A2R5GV14_9STRA (Xyloglucan 6-xylosyltransferase 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GV14_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 7.350e-17 Identity = 61/172 (35.47%), Postives = 84/172 (48.84%), Query Frame = 1
Query: 37 FVDIDAFVMNPYFKLEWLLDVAAKQQQTGGLDGWGIKGKDADLIVTKDWNGPNSGVILIKNSEFSRWLLKEWWAQDQFVRGNFPFHYEQRAMHYLLQPDSWQNAGL----PFYADNNLVRERTAVIDQCAMNSYLIHP-WQGL--LGRTRDLGEAAS--YIEGDFMLHFAGK 525
+VD DA MN ++E ++D + DL +D NSGV L++N++++ W LKE W+Q + G+ PF YEQRA+HYL D Q Y + VR +TAV+ CA NS + W GL R R G Y GDF++HFAGK
Sbjct: 223 WVDADAIFMNMTIRVEDIVDA------------------EHDLFFARDEGDINSGVFLVRNTDWAMWWLKEAWSQTWLITGSHPFKYEQRAIHYLYGTDGLQKDARRHNHELYPRVDEVRGKTAVVPYCAFNSNICEEFWTGLALFRRIRWPGWFCDNIYANGDFIIHFAGK 376 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8306.16330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8306.16330.1 >prot_H-paniculata_contig8306.16330.1 ID=prot_H-paniculata_contig8306.16330.1|Name=mRNA_H-paniculata_contig8306.16330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp MNPYFKLEWLLDVAAKQQQTGGLDGWGIKGKDADLIVTKDWNGPNSGVILback to top mRNA from alignment at H-paniculata_contig8306:779..10063- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8306.16330.1 ID=mRNA_H-paniculata_contig8306.16330.1|Name=mRNA_H-paniculata_contig8306.16330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9285bp|location=Sequence derived from alignment at H-paniculata_contig8306:779..10063- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8306:779..10063- >mRNA_H-paniculata_contig8306.16330.1 ID=mRNA_H-paniculata_contig8306.16330.1|Name=mRNA_H-paniculata_contig8306.16330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig8306:779..10063- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |